Plant FIBer expression Database

External link	JGI Phytozome v13 [genome browser]
Symbol
Arabidopsis homologues Show only best Show top 10	Locus ID BLAST score/e-value TF class Alias TAIR10 short description AT3G20810 443 / 2e-155 JMJ30, JMJD5 2-oxoglutarate (2OG) and Fe(II)-dependent oxygenase superfamily protein (.1), 2-oxoglutarate (2OG) and Fe(II)-dependent oxygenase superfamily protein (.2), 2-oxoglutarate (2OG) and Fe(II)-dependent oxygenase superfamily protein (.3) AT5G19840 74 / 3e-14 2-oxoglutarate (2OG) and Fe(II)-dependent oxygenase superfamily protein (.1), 2-oxoglutarate (2OG) and Fe(II)-dependent oxygenase superfamily protein (.2) AT3G45880 51 / 7e-07 2-oxoglutarate (2OG) and Fe(II)-dependent oxygenase superfamily protein (.1) AT5G63080 51 / 7e-07 2-oxoglutarate (2OG) and Fe(II)-dependent oxygenase superfamily protein (.1) AT5G06550 49 / 3e-06 unknown protein
Paralogs Show only best Show top 10	Gene ID BLAST score/e-value At best hit BLAST score/e-value TAIR10 short description Lus10031247 [exp] 664 / 0 AT3G20810 500 / 8e-178 2-oxoglutarate (2OG) and Fe(II)-dependent oxygenase superfamily protein (.1), 2-oxoglutarate (2OG) and Fe(II)-dependent oxygenase superfamily protein (.2), 2-oxoglutarate (2OG) and Fe(II)-dependent oxygenase superfamily protein (.3) Lus10000493 [exp] 77 / 2e-15 AT5G19840 545 / 0.0 2-oxoglutarate (2OG) and Fe(II)-dependent oxygenase superfamily protein (.1), 2-oxoglutarate (2OG) and Fe(II)-dependent oxygenase superfamily protein (.2) Lus10001249 [exp] 47 / 1e-05 AT5G63080 232 / 8e-74 2-oxoglutarate (2OG) and Fe(II)-dependent oxygenase superfamily protein (.1)
Poplar homologues Show only best Show top 10	Locus ID BLAST score/e-value At best hit BLAST score/e-value TAIR10 short description Potri.001G016200 [exp] 502 / 1e-178 AT3G20810 540 / 0.0 2-oxoglutarate (2OG) and Fe(II)-dependent oxygenase superfamily protein (.1), 2-oxoglutarate (2OG) and Fe(II)-dependent oxygenase superfamily protein (.2), 2-oxoglutarate (2OG) and Fe(II)-dependent oxygenase superfamily protein (.3) Potri.005G215200 [exp] 79 / 9e-16 AT5G19840 579 / 0.0 2-oxoglutarate (2OG) and Fe(II)-dependent oxygenase superfamily protein (.1), 2-oxoglutarate (2OG) and Fe(II)-dependent oxygenase superfamily protein (.2) Potri.015G080400 [exp] 49 / 5e-06 AT5G63080 548 / 0.0 2-oxoglutarate (2OG) and Fe(II)-dependent oxygenase superfamily protein (.1)
PFAM info	Clan ID Clan name Pfam ID Pfam name Pfam description CL0029 [flax] [poplar] Cupin PF08007 [flax] [poplar] Cupin_4 Cupin superfamily protein
Representative CDS sequence Show only first row Show all	>Lus10031818 pacid=23180604 polypeptide=Lus10031818 locus=Lus10031818.g ID=Lus10031818.BGIv1.0 annot-version=v1.0 ATGTCCGCCGCCGTACCAAACGATCAGTTCTCCACTCCCACGCTGGACGCCGAGTCCTCCACCATCCTACAATCCATTTCCTCGCAAGGCGGATACGCCT ATGTCAGGATGGCCACGCTAGCCTCCTCCGGCGACTTCCGTGCGGCAGAGGCGGCGCGTGAGATGGCCTGGGAGCAGCTCCACTCCGGGCCCTGGCATTC TGTGCTCCCAATCTGGCGCGACGCATACTCAGTCGCCTGCCTCCACCTCGCCAGGTTCCACTACCGCGACGGTGAGTTCAAGGAGGCACTTAGGGTTCTG GACATGGGCTTGATCATGGGCGGAATGTTGCTCCGGGGCGATCTGGAATCCGCCGTTCAGTTCGTTTCCGCGAAAGATAGGGAATCTAGACCTGTCGTCG ACGACGGTGAGGAAAGGAAATGCAAATTAGTTGAGGATGGGGAGTTTGATAAGTCGGAGGTGCTTGGTCTTTTACCTGCGAAGTCAATGACTAGCAAGCT TGTGGCGAAGAAGTCTGGCTTATCTCTGGAAGGGTTTCTTCAGGAGCATTTCTTAGTTGGCTTGCCGGTTATCATTAGCGACTCCATGGCTCATTGGCCC GCTGTGAAGAAATGGAACGATATTAATTATCTCCGAAGTGTGGCCGGCGCAAGAACTGTTCCAGTTGAGATAAATCAGCTGCGGAATGATATATGCATTC CTGACTATTGTTGTGCTGGCGGTGGGGAGCTTAGGTCTCTTAATGCTTGGTTTGGCCCTGCTGGCACTGTTACACCATTGCATCATGATCCTCACCATAA CATCTTTGCACAGGTTGTTGGCAAGAAGTATATCCGGCTTTACTCGCCTTCGCTGTCGGAGGAACTTCATCCCCACAACGAGACCATGCTCTACAATTCC AGCAAGGTTGATCTCGACAACATAGATGAGAAATCCTTCCCAAATGTTCGCGATCTAGAGTTTCTGGACTGCATTCTGGAAGAGGGGGAAATGCTATACA TCCCGCCGAAATGGTGGCACTACGTTCGGTCTCTAACGACGAGTCTTTCGGTTAGCTTTTGGTGGAGTGACGAGTCCGGAGGCTCTGATACCACGCATTA G
AA sequence Show only first row Show all	>Lus10031818 pacid=23180604 polypeptide=Lus10031818 locus=Lus10031818.g ID=Lus10031818.BGIv1.0 annot-version=v1.0 MSAAVPNDQFSTPTLDAESSTILQSISSQGGYAYVRMATLASSGDFRAAEAAREMAWEQLHSGPWHSVLPIWRDAYSVACLHLARFHYRDGEFKEALRVL DMGLIMGGMLLRGDLESAVQFVSAKDRESRPVVDDGEERKCKLVEDGEFDKSEVLGLLPAKSMTSKLVAKKSGLSLEGFLQEHFLVGLPVIISDSMAHWP AVKKWNDINYLRSVAGARTVPVEINQLRNDICIPDYCCAGGGELRSLNAWFGPAGTVTPLHHDPHHNIFAQVVGKKYIRLYSPSLSEELHPHNETMLYNS SKVDLDNIDEKSFPNVRDLEFLDCILEEGEMLYIPPKWWHYVRSLTTSLSVSFWWSDESGGSDTTH

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DESeq2's median of ratios [FLAX]

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Coexpressed genes

Compare expression of checked genes Schematic diagram [FLAX] Schematic diagram [POPLAR]

*If you select 4 or less genes and then press "compare expression", expression will be shown as a graph. If you select more than 4 genes, expresion will be shown as a heat map.
*Color represents relative expression level among samples for each gene.

At best	At TF class	At alias	At description		Locus	MR	r	Symbol	HYP	R_s2_CTR	R_s2_Fox	R_s4_CTR	R_s4_Fox	R_r1_CTR	R_r1_Fox	R_r3_CTR	R_r3_Fox	R_r1s2_CTR	R_r1s2_Fox	R_r3s2_CTR	R_r3s2_Fox	R_s6_CTR	R_s6_Al4	R_s6_Al12	R_s6_Al24	R_s8_CTR	R_s8_Al4	R_s8_Al12	R_s8_Al24	R_r5_CTR	R_r5_Al4	R_r5_Al12	R_r5_Al24	R_r7_CTR	R_r7_Al4	R_r7_Al12	R_r7_Al24	LEAF_N	LEAF_P	LEAF_NPK	SAM	AR_Bet	AR_rdf	cPAR	TOP_Bet	TOP_rdf	iFIBa	iFIBb	MID_Bet	MID_rdf	tFIBa	tFIB_Gr	tFIB_Li	tFIB_Bi	tFIBb	tFIBb_PUL8	tFIBb_PUL24	tFIBb_PUL96	tFIBb_OPP8	tFIBb_OPP24	tFIBb_OPP96	sXYLa	sXYLb	sXYLb_PUL8	sXYLb_PUL24	sXYLb_PUL96	sXYLb_OPP8	sXYLb_OPP24	sXYLb_OPP96
AT3G20810		JMJ30, JMJD5	2-oxoglutarate (2OG) and Fe(II...		Lus10031818 [exp]	0	1
AT3G20810		JMJ30, JMJD5	2-oxoglutarate (2OG) and Fe(II...		Lus10031247 [exp]	1.0	0.9820
AT5G61380		AtTOC1, TOC1, A...	PSEUDO-RESPONSE REGULATOR 1, T...		Lus10019077 [exp]	1.7	0.9119
AT5G61380		AtTOC1, TOC1, A...	PSEUDO-RESPONSE REGULATOR 1, T...		Lus10015720 [exp]	2.0	0.9201
AT4G02340			alpha/beta-Hydrolases superfam...		Lus10037559 [exp]	2.8	0.8580
AT3G46640	GARP	PCL1, LUX	PHYTOCLOCK 1, LUX ARRHYTHMO, H...		Lus10040780 [exp]	5.0	0.8302
					Lus10014061 [exp]	5.5	0.8144
AT5G48250	CO	COL10	B-box type zinc finger protein...		Lus10036419 [exp]	9.5	0.8140
AT5G48250	CO	COL10	B-box type zinc finger protein...		Lus10041096 [exp]	10.2	0.8088
					Lus10005752 [exp]	12.0	0.7544
AT2G21660		CCR2, ATGRP7, G...	GLYCINE-RICH RNA-BINDING PROTE...		Lus10042320 [exp]	12.1	0.7478

Compare expression of checked genes

Lus10031818 coexpression network

*The number of genes in the network is adjusted within 50 genes.
*Gene name represents symbol(s) of closest Arabidopsis gene if symbol(s) for the gene itself doesn't exist.
*Circle diameter represents the number of connection with other genes within this network.
*Color for gene name represents subnetwork based on the result of network clustering.