Plant FIBer expression Database

External link	JGI Phytozome v13 [genome browser]
Symbol
Arabidopsis homologues Show only best Show top 10	Locus ID BLAST score/e-value TF class Alias TAIR10 short description AT5G12890 457 / 7e-158 UDP-Glycosyltransferase superfamily protein (.1) AT2G15490 212 / 6e-63 UGT73B4 UDP-glycosyltransferase 73B4 (.1.2.3) AT2G15480 209 / 8e-62 UGT73B5 UDP-glucosyl transferase 73B5 (.1.2) AT2G36780 209 / 1e-61 UDP-Glycosyltransferase superfamily protein (.1) AT2G36770 209 / 1e-61 UDP-Glycosyltransferase superfamily protein (.1) AT4G34138 207 / 4e-61 UGT73B1 UDP-glucosyl transferase 73B1 (.1) AT2G36750 205 / 5e-60 UGT73C1, UGT72C1 UDP-glucosyl transferase 73C1 (.1) AT4G34131 203 / 1e-59 UGT73B3 UDP-glucosyl transferase 73B3 (.1) AT4G34135 202 / 5e-59 UGT73B2 UDP-glucosyltransferase 73B2 (.1.2) AT1G73880 199 / 3e-58 UGT89B1 UDP-glucosyl transferase 89B1 (.1)
Paralogs Show only best Show top 10	Gene ID BLAST score/e-value At best hit BLAST score/e-value TAIR10 short description Lus10031248 [exp] 812 / 0 AT5G12890 512 / 2e-179 UDP-Glycosyltransferase superfamily protein (.1) Lus10025513 [exp] 367 / 3e-122 AT5G12890 348 / 9e-115 UDP-Glycosyltransferase superfamily protein (.1) Lus10034650 [exp] 219 / 1e-65 AT1G73880 484 / 6e-169 UDP-glucosyl transferase 89B1 (.1) Lus10003322 [exp] 218 / 6e-65 AT2G36780 468 / 9e-162 UDP-Glycosyltransferase superfamily protein (.1) Lus10014079 [exp] 214 / 1e-63 AT4G34131 483 / 3e-168 UDP-glucosyl transferase 73B3 (.1) Lus10014437 [exp] 213 / 1e-62 AT2G36780 545 / 0.0 UDP-Glycosyltransferase superfamily protein (.1) Lus10003323 [exp] 212 / 2e-62 AT2G36800 493 / 2e-171 UDP-GLUCOSYL TRANSFERASE 73C5, don-glucosyltransferase 1 (.1) Lus10019832 [exp] 208 / 4e-61 AT2G15490 494 / 1e-172 UDP-glycosyltransferase 73B4 (.1.2.3) Lus10014084 [exp] 204 / 9e-60 AT2G15490 445 / 2e-153 UDP-glycosyltransferase 73B4 (.1.2.3)
Poplar homologues Show only best Show top 10	Locus ID BLAST score/e-value At best hit BLAST score/e-value TAIR10 short description Potri.001G016300 [exp] 593 / 0 AT5G12890 543 / 0.0 UDP-Glycosyltransferase superfamily protein (.1) Potri.003G210400 [exp] 496 / 3e-173 AT5G12890 525 / 0.0 UDP-Glycosyltransferase superfamily protein (.1) Potri.001G016500 [exp] 487 / 1e-169 AT5G12890 525 / 0.0 UDP-Glycosyltransferase superfamily protein (.1) Potri.017G077800 [exp] 366 / 6e-122 AT5G12890 387 / 3e-130 UDP-Glycosyltransferase superfamily protein (.1) Potri.017G077400 [exp] 362 / 2e-120 AT5G12890 381 / 1e-127 UDP-Glycosyltransferase superfamily protein (.1) Potri.017G077500 [exp] 362 / 3e-120 AT5G12890 389 / 9e-131 UDP-Glycosyltransferase superfamily protein (.1) Potri.017G077700 [exp] 324 / 3e-106 AT5G12890 332 / 1e-109 UDP-Glycosyltransferase superfamily protein (.1) Potri.012G065100 [exp] 228 / 5e-69 AT1G73880 539 / 0.0 UDP-glucosyl transferase 89B1 (.1) Potri.009G098966 [exp] 228 / 1e-68 AT4G34131 588 / 0.0 UDP-glucosyl transferase 73B3 (.1) Potri.001G303000 [exp] 222 / 1e-66 AT4G34131 573 / 0.0 UDP-glucosyl transferase 73B3 (.1)
PFAM info	Clan ID Clan name Pfam ID Pfam name Pfam description CL0113 [flax] [poplar] GT-B PF00201 [flax] [poplar] UDPGT UDP-glucoronosyl and UDP-glucosyl transferase
Representative CDS sequence Show only first row Show all	>Lus10031819 pacid=23180794 polypeptide=Lus10031819 locus=Lus10031819.g ID=Lus10031819.BGIv1.0 annot-version=v1.0 ATGGCTTCCGACCAAACCCACATTGTCTTGTTCCCTTTCATGGCGCAGGGCCACATCATCCCATTCCTAGCCCTCGCCCACCACATCGAACAAAGAACCA ACCAAAGAACAACATCAATCACTCTCATCAACACTCAACTCAACGTCAAGAAGCTCCGATCATCGCTCCCTCCGACGTCCACCATCAACCTCCTGGAAAT CCCCTTCGAGAGCTCAGACCACCAAGGCCTTCCTCCTGGAACAGAGAACACCGACGTCCTCCCTTACCCGCTCATCATCCGCCTCCTCCAAGCCTCCACC ACCCTCCGCCCTGCGTTTAAATCCCTCGTCGTCGATATCGCCGGCGCCGCCCGCGACCGTGTCTGTATAATCGCTGACATCTTCTTCGGATGGACGGCTC CCGTGGCCAAAGAGATCGGAGCTTTCCACGTTATTTTCAGCGGTTCAGGTGGATTTGGATGGGCTTGCTATTACTCGATCTGGCTCTCGCTTCCTCATCG GAACTGCGACGAAGAAACAAAAGGTGAGTACTTTCGGCTGGAGGATTTCCACGAGGCGTCGAGATTTCACAAGACTCAGCTGCCAACGAGCATCCTGGAA GCCGATGGATCCGATCCTTGGTCTCTGTTTCAGAGGGAGAATCTAACGGCGTGGAGAGACTCCGACGGGATTCTTTTCAACACAGTGGAAGAATTCGATT CGATCGGGCTGTGTTATTTCCGTCGGAAGTTAGGGATTCCAGCTTGGGCGATCGGACCCGTTTTGCTCAACAGAAATCGTTCAAATTCTGGTTCAGGCAT TTCGTCGAACAGTTGCAAGGCATGGCTGGACACAAAGCCAGAGAAGTCAGTCCTCTACGTATCATTCGGATCTCAAAACACGATCAATCCATCTCAGATG ATGCAATTAGGTAAAGCGTTAGCCTCCAGCAAGATAAACTTCATATGGGCAGTACGGCCGCCGATCGGATTCGACATAAACTCCGAATTCCAACCTCAAG AATGGCTCCCAGCAAAATTCGAGGAGAATACATCAGGAAGAGGGATGCTGATCGAGAAATGGGCTCCGCAATTTGAGATACTGTCTCATAAGGCGACCGG CGGGTTTCTGAGCCACTGCGGGTGGAATTCGGTGCTGGAGTCGTTGAGCTGCGGGGTGCCGATGATCGGATGGGCGATGGCCGGGGAGCAGTTCTTCAAC GTGAAGTTCTTGGAGGAGAATCTGGGGGTTTGTGTGGAATTGGCGAGAGGGAAAAGCTGTGAAGTGAAGTGTGAAGAGATTGTGGAGAAGATTGAGGCTG TGATGAGTGGCGGTGAGATCAGGAGGAAGGCTTTGGAAGTGAAGGAGATGATGAGAAACGCCGTGAGTGACGGTGGTGATGGCGGGAGGAAGGGCTCGTC GTTGATCGCGGTGGATGAGTTTCTGACGGCGGCGATAACGTCAACGAAAGCGACGGCGGCGGATGTTTGA
AA sequence Show only first row Show all	>Lus10031819 pacid=23180794 polypeptide=Lus10031819 locus=Lus10031819.g ID=Lus10031819.BGIv1.0 annot-version=v1.0 MASDQTHIVLFPFMAQGHIIPFLALAHHIEQRTNQRTTSITLINTQLNVKKLRSSLPPTSTINLLEIPFESSDHQGLPPGTENTDVLPYPLIIRLLQAST TLRPAFKSLVVDIAGAARDRVCIIADIFFGWTAPVAKEIGAFHVIFSGSGGFGWACYYSIWLSLPHRNCDEETKGEYFRLEDFHEASRFHKTQLPTSILE ADGSDPWSLFQRENLTAWRDSDGILFNTVEEFDSIGLCYFRRKLGIPAWAIGPVLLNRNRSNSGSGISSNSCKAWLDTKPEKSVLYVSFGSQNTINPSQM MQLGKALASSKINFIWAVRPPIGFDINSEFQPQEWLPAKFEENTSGRGMLIEKWAPQFEILSHKATGGFLSHCGWNSVLESLSCGVPMIGWAMAGEQFFN VKFLEENLGVCVELARGKSCEVKCEEIVEKIEAVMSGGEIRRKALEVKEMMRNAVSDGGDGGRKGSSLIAVDEFLTAAITSTKATAADV

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DESeq2's median of ratios [FLAX]

Order by: Tissue Experiment Show only core collection Show again Show schematic diagram

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Coexpressed genes

Compare expression of checked genes Schematic diagram [FLAX] Schematic diagram [POPLAR]

*If you select 4 or less genes and then press "compare expression", expression will be shown as a graph. If you select more than 4 genes, expresion will be shown as a heat map.
*Color represents relative expression level among samples for each gene.

At best	At TF class	At alias	At description		Locus	MR	r	Symbol	HYP	R_s2_CTR	R_s2_Fox	R_s4_CTR	R_s4_Fox	R_r1_CTR	R_r1_Fox	R_r3_CTR	R_r3_Fox	R_r1s2_CTR	R_r1s2_Fox	R_r3s2_CTR	R_r3s2_Fox	R_s6_CTR	R_s6_Al4	R_s6_Al12	R_s6_Al24	R_s8_CTR	R_s8_Al4	R_s8_Al12	R_s8_Al24	R_r5_CTR	R_r5_Al4	R_r5_Al12	R_r5_Al24	R_r7_CTR	R_r7_Al4	R_r7_Al12	R_r7_Al24	LEAF_N	LEAF_P	LEAF_NPK	SAM	AR_Bet	AR_rdf	cPAR	TOP_Bet	TOP_rdf	iFIBa	iFIBb	MID_Bet	MID_rdf	tFIBa	tFIB_Gr	tFIB_Li	tFIB_Bi	tFIBb	tFIBb_PUL8	tFIBb_PUL24	tFIBb_PUL96	tFIBb_OPP8	tFIBb_OPP24	tFIBb_OPP96	sXYLa	sXYLb	sXYLb_PUL8	sXYLb_PUL24	sXYLb_PUL96	sXYLb_OPP8	sXYLb_OPP24	sXYLb_OPP96
AT5G12890			UDP-Glycosyltransferase superf...		Lus10031819 [exp]	0	1
AT5G42200			RING/U-box superfamily protein...		Lus10005617 [exp]	1.0	0.9095
AT2G45260			Plant protein of unknown funct...		Lus10030291 [exp]	1.4	0.9090
AT5G01410		PDX1, ATPDX1.3,...	REDUCED SUGAR RESPONSE 4, ARAB...		Lus10036181 [exp]	4.2	0.9049
AT1G27190			Leucine-rich repeat protein ki...		Lus10030811 [exp]	5.2	0.8817
AT3G15210	AP2_ERF	ATERF4, RAP2.5...	RELATED TO AP2 5, ethylene res...		Lus10029987 [exp]	7.7	0.8927
AT2G46620			P-loop containing nucleoside t...		Lus10030220 [exp]	10.2	0.8818
AT5G09800			ARM repeat superfamily protein...		Lus10006791 [exp]	10.9	0.8846
AT3G15610			Transducin/WD40 repeat-like su...		Lus10043302 [exp]	11.5	0.8756
AT3G55830		EPC1	ECTOPICALLY PARTING CELLS, Nuc...		Lus10027392 [exp]	12.0	0.8747
AT1G53920		GLIP5	GDSL-motif lipase 5 (.1)		Lus10013185 [exp]	13.3	0.8718

Compare expression of checked genes

Lus10031819 coexpression network

*The number of genes in the network is adjusted within 50 genes.
*Gene name represents symbol(s) of closest Arabidopsis gene if symbol(s) for the gene itself doesn't exist.
*Circle diameter represents the number of connection with other genes within this network.
*Color for gene name represents subnetwork based on the result of network clustering.