Plant FIBer expression Database

External link	JGI Phytozome v13 [genome browser]
Symbol
Arabidopsis homologues Show only best Show top 10	Locus ID BLAST score/e-value TF class Alias TAIR10 short description AT5G12900 439 / 3e-148 unknown protein AT1G12330 192 / 2e-54 unknown protein AT2G45260 78 / 4e-15 Plant protein of unknown function (DUF641) (.1) AT5G58960 62 / 7e-10 GIL1 GRAVITROPIC IN THE LIGHT, Plant protein of unknown function (DUF641) (.1), Plant protein of unknown function (DUF641) (.2), Plant protein of unknown function (DUF641) (.3) AT3G60680 62 / 8e-10 Plant protein of unknown function (DUF641) (.1) AT3G14870 52 / 7e-07 Plant protein of unknown function (DUF641) (.1), Plant protein of unknown function (DUF641) (.2), Plant protein of unknown function (DUF641) (.3) AT1G53380 44 / 0.0002 Plant protein of unknown function (DUF641) (.1), Plant protein of unknown function (DUF641) (.2), Plant protein of unknown function (DUF641) (.3)
Paralogs Show only best Show top 10	Gene ID BLAST score/e-value At best hit BLAST score/e-value TAIR10 short description Lus10031249 [exp] 999 / 0 AT5G12900 448 / 1e-151 unknown protein Lus10024559 [exp] 189 / 3e-53 AT1G12330 479 / 3e-166 unknown protein Lus10032197 [exp] 187 / 1e-52 AT1G12330 476 / 2e-165 unknown protein Lus10004335 [exp] 181 / 2e-50 AT1G12330 468 / 7e-162 unknown protein Lus10028918 [exp] 170 / 1e-47 AT1G12330 399 / 3e-137 unknown protein Lus10001989 [exp] 76 / 2e-14 AT2G45260 671 / 0.0 Plant protein of unknown function (DUF641) (.1) Lus10016444 [exp] 71 / 2e-12 AT5G58960 635 / 0.0 GRAVITROPIC IN THE LIGHT, Plant protein of unknown function (DUF641) (.1), Plant protein of unknown function (DUF641) (.2), Plant protein of unknown function (DUF641) (.3) Lus10030291 [exp] 70 / 2e-12 AT2G45260 668 / 0.0 Plant protein of unknown function (DUF641) (.1) Lus10009284 [exp] 64 / 2e-10 AT3G60680 541 / 0.0 Plant protein of unknown function (DUF641) (.1)
Poplar homologues Show only best Show top 10	Locus ID BLAST score/e-value At best hit BLAST score/e-value TAIR10 short description Potri.003G210200 [exp] 518 / 2e-177 AT5G12900 603 / 0.0 unknown protein Potri.001G016600 [exp] 506 / 2e-174 AT5G12900 555 / 0.0 unknown protein Potri.001G117000 [exp] 207 / 6e-60 AT1G12330 465 / 1e-160 unknown protein Potri.003G115700 [exp] 204 / 7e-59 AT1G12330 503 / 2e-175 unknown protein Potri.002G145900 [exp] 73 / 2e-13 AT2G45260 692 / 0.0 Plant protein of unknown function (DUF641) (.1) Potri.014G067600 [exp] 62 / 3e-10 AT2G45260 462 / 3e-163 Plant protein of unknown function (DUF641) (.1) Potri.009G041000 [exp] 59 / 9e-09 AT5G58960 466 / 2e-159 GRAVITROPIC IN THE LIGHT, Plant protein of unknown function (DUF641) (.1), Plant protein of unknown function (DUF641) (.2), Plant protein of unknown function (DUF641) (.3) Potri.002G145000 [exp] 56 / 4e-08 AT3G60680 494 / 4e-172 Plant protein of unknown function (DUF641) (.1) Potri.001G387700 [exp] 56 / 6e-08 AT1G53380 524 / 0.0 Plant protein of unknown function (DUF641) (.1), Plant protein of unknown function (DUF641) (.2), Plant protein of unknown function (DUF641) (.3) Potri.014G066600 [exp] 56 / 6e-08 AT3G60680 522 / 0.0 Plant protein of unknown function (DUF641) (.1)
PFAM info
Representative CDS sequence Show only first row Show all	>Lus10031820 pacid=23180704 polypeptide=Lus10031820 locus=Lus10031820.g ID=Lus10031820.BGIv1.0 annot-version=v1.0 ATGGCGTCCGCCGCACTTGCTTCCTCCACCCATCAACTCTTCGACGACGGCGGAGGTGAACTCAACAGACATGAAATACAATCCGCCATTGCTAAAGCCG TCGAGCTTCGAGCTTTACATGCTGCTCTGATTCAAGGCACCAACTCCAGCAGCCCTTCTTCTTCCCGCCCTCCTCTTCCTCACTTCTCCGCGGTCGACTA CCCTGTATTCACTCCAAGTTATGAAGACGAGCCCTTTCAAGGAACCCTTTATCCCCTTCCGGCGAGGTCAAGAGCAGCATCACAAAGCTGGGATGAATGC GAGAATAATTACTCCTACTCTTGTAGAAAAGTCGCTGCTGACGATCAGAAATCCGTGACCGGATCCTGCGCCGGCGGCAACAACAACAACAACATCGCCG TCGTCCTGCGTGCTTCTCCTGAGCTCTGCAAATCCGGCAGAGCTCTGACCCACTTACCAACAGACTTCAAATCCTCATCCTCCTCCTACAACCGGTTCCG TCAAACCGGCGACGCCCCCGCCGTGAACAAGAAGAACAGGGTTAATTCCAATATCGTCGTCCCGTTGACCGACTCCCACGCCTCCATCCAGTCCCAGCCG AGGAGCAAAGGAGTGATGTCGTGGCTGTTTCCACGGCTAAGGAAGAATAAGAATAAGCAGCCAAACAACGAAGCTAATATCTTTTCCCCGAATCGGACGG AATCCGACACTGCCTCTCAGGCATTCGGCGGCGAATCGGGCGTTCTCCTCTCAGTCGAGACGCTCAGGAGAGAGCTGAGGGAATCAAACAAAACGAGAGA CGCAGCTTTGGCTGAAGTTTCAGAGACCAGGTCTTCTCTTGACTCTTTGAGACAAAAGCTCGAACACTTGGAGGGCTACTGCGAAGAGCTGAAGAAATCC CTCAAATCCGCAGCCAGAGCCACCAGACGCGGCAAATCGATCGACGGCAACGCAGATGGGAATGTCAATTCGTCGAATACGATCTTCCCGGTGAGCGATG AAGCCATGGTGGAAGGATTCCTACAGATGGCGTCGGAATCGAGACTCTCAGTGAAGCAATTCTGCAAAACTCTAATCCTACAAATCGACGAGTACGACAC GGATTTGACTATCGGGAATTCGAATCGAGATTCAAATTCCAAATCGTTTCTCTACCAATTGGAATCGGCAATCAACGAGGCGATGTACCTGGACTTCGAG AACTGCGAGTTCCGGCGGAACGGCTCGCCGAAGCATCTAGACAAGGCGCAGTATCGTCAGGCGAAGTTTCAATCGTTCATTTCGCTGAGGAATCTGAGTT GGAACGAAGTTTTAAGGAAAGGGACGAAGTATTACAGCGAGGAGTTCAGCAAGTTCTGCGATCAGAAGATGAGCTGCGTCATCGCGGCGCTGAATTGGAC GCGCCCGTGGCCGGAGCAGCTGCTTTGGACGCGCCCGTGGACGGAGCAGCTGCTGCAGGCGTTCTTCGTGGCGGCGAAGTGTATATGGCTGCTGCATCTG CTGGCGTTCTCGTTCGATCCGGCGATCGGGGTGATGAGGGTGGAGGAAGGTAGGGAGCTCGATCATGGGTATATGGAAGATATGGAGAGGCAGAGAGACG CCGGCGGGAGAAGGAAGGTTGTGAAGGCGATGGTGATGCCGGGGTTTTATGTCAACGGCGGGAGGGTTTTGAGGTGTAAGGTTCTGTGTGGGTACTACAA TAACGGTCATAAGGGTTATGCTTCCGCTACTGGTTAG
AA sequence Show only first row Show all	>Lus10031820 pacid=23180704 polypeptide=Lus10031820 locus=Lus10031820.g ID=Lus10031820.BGIv1.0 annot-version=v1.0 MASAALASSTHQLFDDGGGELNRHEIQSAIAKAVELRALHAALIQGTNSSSPSSSRPPLPHFSAVDYPVFTPSYEDEPFQGTLYPLPARSRAASQSWDEC ENNYSYSCRKVAADDQKSVTGSCAGGNNNNNIAVVLRASPELCKSGRALTHLPTDFKSSSSSYNRFRQTGDAPAVNKKNRVNSNIVVPLTDSHASIQSQP RSKGVMSWLFPRLRKNKNKQPNNEANIFSPNRTESDTASQAFGGESGVLLSVETLRRELRESNKTRDAALAEVSETRSSLDSLRQKLEHLEGYCEELKKS LKSAARATRRGKSIDGNADGNVNSSNTIFPVSDEAMVEGFLQMASESRLSVKQFCKTLILQIDEYDTDLTIGNSNRDSNSKSFLYQLESAINEAMYLDFE NCEFRRNGSPKHLDKAQYRQAKFQSFISLRNLSWNEVLRKGTKYYSEEFSKFCDQKMSCVIAALNWTRPWPEQLLWTRPWTEQLLQAFFVAAKCIWLLHL LAFSFDPAIGVMRVEEGRELDHGYMEDMERQRDAGGRRKVVKAMVMPGFYVNGGRVLRCKVLCGYYNNGHKGYASATG

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DESeq2's median of ratios [FLAX]

Order by: Tissue Experiment Show only core collection Show again Show schematic diagram

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Coexpressed genes

Compare expression of checked genes Schematic diagram [FLAX] Schematic diagram [POPLAR]

*If you select 4 or less genes and then press "compare expression", expression will be shown as a graph. If you select more than 4 genes, expresion will be shown as a heat map.
*Color represents relative expression level among samples for each gene.

At best	At TF class	At alias	At description		Locus	MR	r	Symbol	HYP	R_s2_CTR	R_s2_Fox	R_s4_CTR	R_s4_Fox	R_r1_CTR	R_r1_Fox	R_r3_CTR	R_r3_Fox	R_r1s2_CTR	R_r1s2_Fox	R_r3s2_CTR	R_r3s2_Fox	R_s6_CTR	R_s6_Al4	R_s6_Al12	R_s6_Al24	R_s8_CTR	R_s8_Al4	R_s8_Al12	R_s8_Al24	R_r5_CTR	R_r5_Al4	R_r5_Al12	R_r5_Al24	R_r7_CTR	R_r7_Al4	R_r7_Al12	R_r7_Al24	LEAF_N	LEAF_P	LEAF_NPK	SAM	AR_Bet	AR_rdf	cPAR	TOP_Bet	TOP_rdf	iFIBa	iFIBb	MID_Bet	MID_rdf	tFIBa	tFIB_Gr	tFIB_Li	tFIB_Bi	tFIBb	tFIBb_PUL8	tFIBb_PUL24	tFIBb_PUL96	tFIBb_OPP8	tFIBb_OPP24	tFIBb_OPP96	sXYLa	sXYLb	sXYLb_PUL8	sXYLb_PUL24	sXYLb_PUL96	sXYLb_OPP8	sXYLb_OPP24	sXYLb_OPP96
AT5G12900			unknown protein		Lus10031820 [exp]	0	1
AT1G74700		NUZ, TRZ1	tRNAse Z1 (.1)		Lus10024249 [exp]	1.7	0.8000
AT3G52780		ATPAP20, PAP20	Purple acid phosphatases super...		Lus10017057 [exp]	26.1	0.7125
AT1G22450		ATCOX6B2, COX6B	CYTOCHROME C OXIDASE 6B2, cyto...		Lus10010345 [exp]	28.5	0.7619
AT1G56310			Polynucleotidyl transferase, r...		Lus10010930 [exp]	29.9	0.7771
AT3G24570			Peroxisomal membrane 22 kDa (M...		Lus10034922 [exp]	45.9	0.7343
AT3G29270			RING/U-box superfamily protein...		Lus10003473 [exp]	53.5	0.7488
					Lus10005391 [exp]	55.2	0.7469
AT4G18910		ATNLM2, NIP1;2,...	NOD26-LIKE INTRINSIC PROTEIN 2...		Lus10007322 [exp]	59.1	0.7227
AT3G17180		SCPL33	serine carboxypeptidase-like 3...		Lus10037810 [exp]	64.4	0.7519
AT2G36410			Family of unknown function (DU...		Lus10027724 [exp]	65.0	0.7403

Compare expression of checked genes

Lus10031820 coexpression network

*The number of genes in the network is adjusted within 50 genes.
*Gene name represents symbol(s) of closest Arabidopsis gene if symbol(s) for the gene itself doesn't exist.
*Circle diameter represents the number of connection with other genes within this network.
*Color for gene name represents subnetwork based on the result of network clustering.