Plant FIBer expression Database

External link	JGI Phytozome v13 [genome browser]
Symbol
Arabidopsis homologues Show only best Show top 10	Locus ID BLAST score/e-value TF class Alias TAIR10 short description AT5G12920 347 / 4e-115 Transducin/WD40 repeat-like superfamily protein (.1.2.3) AT4G07410 43 / 0.0005 PCN POPCORN, Transducin family protein / WD-40 repeat family protein (.1.2)
Paralogs Show only best Show top 10	Gene ID BLAST score/e-value At best hit BLAST score/e-value TAIR10 short description Lus10031253 [exp] 587 / 0 AT5G12920 375 / 2e-125 Transducin/WD40 repeat-like superfamily protein (.1.2.3)
Poplar homologues Show only best Show top 10	Locus ID BLAST score/e-value At best hit BLAST score/e-value TAIR10 short description Potri.001G016800 [exp] 404 / 3e-138 AT5G12920 503 / 3e-175 Transducin/WD40 repeat-like superfamily protein (.1.2.3)
PFAM info
Representative CDS sequence Show only first row Show all	>Lus10031823 pacid=23180809 polypeptide=Lus10031823 locus=Lus10031823.g ID=Lus10031823.BGIv1.0 annot-version=v1.0 ATGGAAAAGGAGCTTGCTCGAGTTAACCGGGAAGCTGGATCCCAATTACCGCCACGACCTCTCTTCTCTGCTCATGCAATCTTATTCACAGGAGTATCTG CTATTGAATTCGACTCTAAGGGTGTCTACTTAGCTTCAGTAACGAAATCCGGTTGTTTGACGATTCATGACTTTGAAGCTCTTTATTGTCACGCCAACGA TGTAGCATCTAAGAGGCCAGATGTGCAAGAAGATGAAAGCAAACTTGTGTTGCATCTCCAATTGGAAATCCAACTCTCTGCTGTACGCTGGAACCCTGCC AACCAAGATGAGGTTGCTTGCACTTCTTCGAAGAGTGATGAAGTGCGCATTTTCGACATTGGTTATGTCTCTTCTCAGCCAGCTCAGGTGTTACGAGCAA GGAAGAATGTGACTCTTTCCGGGTATCAAATTCATAAAGGGCTTACTGATATAGCGTTTAGTACAAATGATGAGTCAAGGTTGGCTAAGCAAACTTGTTA TTCTTTAATGGATTTTTGGCTCAAAGAGTTATTTGCATCTGATACAAAGGGGACAGTCAATGTATGGGACAGAAGACAGGGTGTTCTACCTTGTCTTGAG CTAACAAGCAATGATCACTGTAACATCAATAGCATCCAATTGAATGTGGATGATCAGACGGTTTTCGGGGCTGGTAGGCTCGGAATAATTTACATGTGGG ATCTCCGCGGTGGAAGGGATTCTTCGGCTTTACAACGTCACAAAGAACAGGTATATATAGTCAAGAGGTTCTTGTTCGTGTTAGATCAAGACGAGGAGTT GAATTCGTTGCTCGAATTATTCGACAGGCATGCCATTCACCTGTCGGGCGTTTTCGACATTAACAATCTTCGAGTGACGCATGTTCACTGCCCCCCTCCA GCTTGGTTAAACGACTCGAATAACTCGATTGACGACTTATGCTTCCGGAAACCATCATGGCTCCAGACATACTCAACATACGCAGTTGGATCATCTGCCG AGAATGGGATTCATCTGTTAGACTTCTACCCCAACGTCACATCTCCTTGCCATGTCGATTACAGTGAGGATATCAATGGACTCAACGGAAGAAGGCGAAA CCAATACATTTCATTGGATCAGAGTGTAACTGTCTGTGCTGCTCATCCTCTCAACGACACTATCATCGCTGGAACCAGTCATTCGTCGTTGGCCCTCGTT TCGAATGGAAATCAAGCAGCAATGCAAAATGATGACGGGAATGATTAG
AA sequence Show only first row Show all	>Lus10031823 pacid=23180809 polypeptide=Lus10031823 locus=Lus10031823.g ID=Lus10031823.BGIv1.0 annot-version=v1.0 MEKELARVNREAGSQLPPRPLFSAHAILFTGVSAIEFDSKGVYLASVTKSGCLTIHDFEALYCHANDVASKRPDVQEDESKLVLHLQLEIQLSAVRWNPA NQDEVACTSSKSDEVRIFDIGYVSSQPAQVLRARKNVTLSGYQIHKGLTDIAFSTNDESRLAKQTCYSLMDFWLKELFASDTKGTVNVWDRRQGVLPCLE LTSNDHCNINSIQLNVDDQTVFGAGRLGIIYMWDLRGGRDSSALQRHKEQVYIVKRFLFVLDQDEELNSLLELFDRHAIHLSGVFDINNLRVTHVHCPPP AWLNDSNNSIDDLCFRKPSWLQTYSTYAVGSSAENGIHLLDFYPNVTSPCHVDYSEDINGLNGRRRNQYISLDQSVTVCAAHPLNDTIIAGTSHSSLALV SNGNQAAMQNDDGND

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DESeq2's median of ratios [FLAX]

Order by: Tissue Experiment Show only core collection Show again Show schematic diagram

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Coexpressed genes

Compare expression of checked genes Schematic diagram [FLAX] Schematic diagram [POPLAR]

*If you select 4 or less genes and then press "compare expression", expression will be shown as a graph. If you select more than 4 genes, expresion will be shown as a heat map.
*Color represents relative expression level among samples for each gene.

At best	At TF class	At alias	At description		Locus	MR	r	Symbol	HYP	R_s2_CTR	R_s2_Fox	R_s4_CTR	R_s4_Fox	R_r1_CTR	R_r1_Fox	R_r3_CTR	R_r3_Fox	R_r1s2_CTR	R_r1s2_Fox	R_r3s2_CTR	R_r3s2_Fox	R_s6_CTR	R_s6_Al4	R_s6_Al12	R_s6_Al24	R_s8_CTR	R_s8_Al4	R_s8_Al12	R_s8_Al24	R_r5_CTR	R_r5_Al4	R_r5_Al12	R_r5_Al24	R_r7_CTR	R_r7_Al4	R_r7_Al12	R_r7_Al24	LEAF_N	LEAF_P	LEAF_NPK	SAM	AR_Bet	AR_rdf	cPAR	TOP_Bet	TOP_rdf	iFIBa	iFIBb	MID_Bet	MID_rdf	tFIBa	tFIB_Gr	tFIB_Li	tFIB_Bi	tFIBb	tFIBb_PUL8	tFIBb_PUL24	tFIBb_PUL96	tFIBb_OPP8	tFIBb_OPP24	tFIBb_OPP96	sXYLa	sXYLb	sXYLb_PUL8	sXYLb_PUL24	sXYLb_PUL96	sXYLb_OPP8	sXYLb_OPP24	sXYLb_OPP96
AT5G12920			Transducin/WD40 repeat-like su...		Lus10031823 [exp]	0	1
AT5G52800			DNA primases (.1.2.3)		Lus10014953 [exp]	2.4	0.9241
AT4G37630		CYCD5;1	cyclin d5;1 (.1.2)		Lus10018688 [exp]	4.2	0.8803
AT3G57060			binding (.1.2)		Lus10039012 [exp]	4.8	0.9306
AT3G54560		HTA11	histone H2A 11 (.1)		Lus10024838 [exp]	6.6	0.9172
AT1G08880		HTA5 ,G-H2AX ,G...	histone H2A 5, gamma histone v...		Lus10028044 [exp]	7.5	0.9206
AT1G63640			P-loop nucleoside triphosphate...		Lus10024628 [exp]	9.4	0.8958
AT3G27060		ATTSO2, TSO2	TSO MEANING 'UGLY' IN CHINESE ...		Lus10035209 [exp]	15.4	0.8807
					Lus10027307 [exp]	15.7	0.9075
AT2G16440		MCM4	MINICHROMOSOME MAINTENANCE 4, ...		Lus10017491 [exp]	17.9	0.9080
AT3G59550		ATSYN3, SYN3, A...	SISTER CHROMATID COHESION 1 PR...		Lus10037478 [exp]	20.5	0.9009

Compare expression of checked genes

Lus10031823 coexpression network

*The number of genes in the network is adjusted within 50 genes.
*Gene name represents symbol(s) of closest Arabidopsis gene if symbol(s) for the gene itself doesn't exist.
*Circle diameter represents the number of connection with other genes within this network.
*Color for gene name represents subnetwork based on the result of network clustering.