Plant FIBer expression Database

External link	JGI Phytozome v13 [genome browser]
Symbol
Arabidopsis homologues Show only best Show top 10	Locus ID BLAST score/e-value TF class Alias TAIR10 short description AT3G20820 482 / 2e-171 Leucine-rich repeat (LRR) family protein (.1) AT5G12940 446 / 3e-157 Leucine-rich repeat (LRR) family protein (.1) AT3G12610 368 / 2e-126 DRT100 DNA-DAMAGE REPAIR/TOLERATION 100, Leucine-rich repeat (LRR) family protein (.1) AT5G23400 177 / 4e-50 Leucine-rich repeat (LRR) family protein (.1) AT2G26380 174 / 4e-50 Leucine-rich repeat (LRR) family protein (.1) AT1G33600 167 / 3e-47 Leucine-rich repeat (LRR) family protein (.1) AT1G33590 166 / 7e-47 Leucine-rich repeat (LRR) family protein (.1) AT1G33670 162 / 8e-46 Leucine-rich repeat (LRR) family protein (.1) AT3G12145 155 / 3e-44 FLOR1, FLR1 FLOR1, Leucine-rich repeat (LRR) family protein (.1) AT1G33610 155 / 5e-43 Leucine-rich repeat (LRR) family protein (.1)
Paralogs Show only best Show top 10	Gene ID BLAST score/e-value At best hit BLAST score/e-value TAIR10 short description Lus10002551 [exp] 484 / 6e-172 AT3G20820 476 / 1e-168 Leucine-rich repeat (LRR) family protein (.1) Lus10037705 [exp] 407 / 4e-142 AT3G12610 438 / 6e-154 DNA-DAMAGE REPAIR/TOLERATION 100, Leucine-rich repeat (LRR) family protein (.1) Lus10010949 [exp] 398 / 2e-138 AT3G20820 440 / 8e-155 Leucine-rich repeat (LRR) family protein (.1) Lus10031377 [exp] 391 / 1e-135 AT3G20820 433 / 3e-152 Leucine-rich repeat (LRR) family protein (.1) Lus10031254 [exp] 315 / 2e-108 AT3G20820 269 / 2e-90 Leucine-rich repeat (LRR) family protein (.1) Lus10015700 [exp] 302 / 5e-102 AT3G12610 343 / 3e-118 DNA-DAMAGE REPAIR/TOLERATION 100, Leucine-rich repeat (LRR) family protein (.1) Lus10021028 [exp] 167 / 1e-48 AT5G06860 362 / 2e-125 polygalacturonase inhibiting protein 1 (.1) Lus10023824 [exp] 166 / 2e-48 AT5G06860 366 / 1e-126 polygalacturonase inhibiting protein 1 (.1) Lus10041064 [exp] 156 / 1e-43 AT1G33590 488 / 3e-171 Leucine-rich repeat (LRR) family protein (.1)
Poplar homologues Show only best Show top 10	Locus ID BLAST score/e-value At best hit BLAST score/e-value TAIR10 short description Potri.001G017500 [exp] 474 / 3e-168 AT3G20820 504 / 3e-180 Leucine-rich repeat (LRR) family protein (.1) Potri.003G207000 [exp] 466 / 3e-165 AT3G20820 488 / 1e-173 Leucine-rich repeat (LRR) family protein (.1) Potri.009G064300 [exp] 442 / 1e-155 AT3G12610 480 / 8e-171 DNA-DAMAGE REPAIR/TOLERATION 100, Leucine-rich repeat (LRR) family protein (.1) Potri.001G269800 [exp] 430 / 7e-151 AT3G20820 477 / 1e-169 Leucine-rich repeat (LRR) family protein (.1) Potri.007G001000 [exp] 174 / 2e-49 AT5G23400 642 / 0.0 Leucine-rich repeat (LRR) family protein (.1) Potri.013G098900 [exp] 167 / 2e-47 AT1G33590 582 / 0.0 Leucine-rich repeat (LRR) family protein (.1) Potri.013G098850 [exp] 165 / 1e-46 AT1G33590 629 / 0.0 Leucine-rich repeat (LRR) family protein (.1) Potri.007G016700 [exp] 166 / 6e-46 AT5G46330 286 / 5e-84 FLAGELLIN-SENSITIVE 2, Leucine-rich receptor-like protein kinase family protein (.1) Potri.010G040200 [exp] 155 / 7e-42 AT5G23400 275 / 3e-83 Leucine-rich repeat (LRR) family protein (.1) Potri.005G117700 [exp] 153 / 2e-41 AT3G24240 240 / 1e-67 Leucine-rich repeat receptor-like protein kinase family protein (.1)
PFAM info	Clan ID Clan name Pfam ID Pfam name Pfam description CL0022 [flax] [poplar] LRR PF00560 [flax] [poplar] LRR_1 Leucine Rich Repeat CL0022 [flax] [poplar] PF08263 [flax] [poplar] LRRNT_2 Leucine rich repeat N-terminal domain
Representative CDS sequence Show only first row Show all	>Lus10031824 pacid=23180682 polypeptide=Lus10031824 locus=Lus10031824.g ID=Lus10031824.BGIv1.0 annot-version=v1.0 ATGGTCCCGTTATTCTTTCACATTGTCCTCTTAACCATCACCGCCGTCACCGCCTGCCCGCCGTCCGACAGGGCGGCGCTCCTAGATTTCAAAGCAGCCC TCCACGAGCCGTACTTGGGTATCTTCAATTCCTGGACCGGAACGGACTGCTGCCACAACTGGTACGGAGTCAGCTGCGACCCGGAAACCCACCGGGTCGC CGACATTAACCTCCGCGGCGAGTCTGAGGAGCCCATCTTCCGTAAAGCCCACCGCAAGTCCGGGTACATGACCGGGACCATTTCCCCTTCCGTCTGCAAG CTCAAGCGCCTCTCCAGCTTAACAATCGCTGACTGGAAAGGCATCTCCGGCGACATCCCGCTCTGCCTCGCCAACCTCCCTTTCCTCCGCGTCCTCGACC TGATCGGTAACCGTCTCACCGGGCGGCTACCCTCCGACATCGGCCGCCTCCATCGCCTCACCGTCCTCAACGTCGCCGACAACCGAATCACCGGCCAGAT CCCTAGCTCGTTCACCAATCTCTCCGGATTGATGCACCTCGATCTGCGTAACAACAGGTTCTATGGACCGATCCCAGCCGATTTTGGCCGGCTCAGGATG CTGAGCAGAGCCCTCCTGAGCCGAAACTACCTATCCGGTTCGATCCCCGATTCGGTTTCCAAAATCTACCGCCTCGCGGATCTGGATCTCTCCCTCAACA GGCTGACGGGTACAATTCCAATGTCTCTCGGAAAGATGGCGGTGCTAGCGACGCTGAACCTCGACGGGAACATGATTACCGGGACAATCCCGGCGGATCT CCTGAGCTCGTCGGTGAACAATCTGAACCTGAGCAGGAACATGCTGGACGGGAAGCTCCCCGAGTTCGGGCCGAGGTCGTACTTCACAGCGCTGGATCTA TCGAGGAACCGCCTGGTCGGAGGGATCCCGGCGACGATAGGGAGCGCGTCCTTCATCGGGCATTTGGATTTGAGCCACAACCATCTGTGTGGGAAGATTC CGTTGGGGTCGCCGTTTGACCACCTTGAAGCGGCGTCGTTTGAGCATAATGACTGCCTTTGCGGCAGGCCGCTTAGACCCTGTTTGACTAAACAGTAA
AA sequence Show only first row Show all	>Lus10031824 pacid=23180682 polypeptide=Lus10031824 locus=Lus10031824.g ID=Lus10031824.BGIv1.0 annot-version=v1.0 MVPLFFHIVLLTITAVTACPPSDRAALLDFKAALHEPYLGIFNSWTGTDCCHNWYGVSCDPETHRVADINLRGESEEPIFRKAHRKSGYMTGTISPSVCK LKRLSSLTIADWKGISGDIPLCLANLPFLRVLDLIGNRLTGRLPSDIGRLHRLTVLNVADNRITGQIPSSFTNLSGLMHLDLRNNRFYGPIPADFGRLRM LSRALLSRNYLSGSIPDSVSKIYRLADLDLSLNRLTGTIPMSLGKMAVLATLNLDGNMITGTIPADLLSSSVNNLNLSRNMLDGKLPEFGPRSYFTALDL SRNRLVGGIPATIGSASFIGHLDLSHNHLCGKIPLGSPFDHLEAASFEHNDCLCGRPLRPCLTKQ

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DESeq2's median of ratios [FLAX]

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Coexpressed genes

Compare expression of checked genes Schematic diagram [FLAX] Schematic diagram [POPLAR]

*If you select 4 or less genes and then press "compare expression", expression will be shown as a graph. If you select more than 4 genes, expresion will be shown as a heat map.
*Color represents relative expression level among samples for each gene.

At best	At TF class	At alias	At description		Locus	MR	r	Symbol	HYP	R_s2_CTR	R_s2_Fox	R_s4_CTR	R_s4_Fox	R_r1_CTR	R_r1_Fox	R_r3_CTR	R_r3_Fox	R_r1s2_CTR	R_r1s2_Fox	R_r3s2_CTR	R_r3s2_Fox	R_s6_CTR	R_s6_Al4	R_s6_Al12	R_s6_Al24	R_s8_CTR	R_s8_Al4	R_s8_Al12	R_s8_Al24	R_r5_CTR	R_r5_Al4	R_r5_Al12	R_r5_Al24	R_r7_CTR	R_r7_Al4	R_r7_Al12	R_r7_Al24	LEAF_N	LEAF_P	LEAF_NPK	SAM	AR_Bet	AR_rdf	cPAR	TOP_Bet	TOP_rdf	iFIBa	iFIBb	MID_Bet	MID_rdf	tFIBa	tFIB_Gr	tFIB_Li	tFIB_Bi	tFIBb	tFIBb_PUL8	tFIBb_PUL24	tFIBb_PUL96	tFIBb_OPP8	tFIBb_OPP24	tFIBb_OPP96	sXYLa	sXYLb	sXYLb_PUL8	sXYLb_PUL24	sXYLb_PUL96	sXYLb_OPP8	sXYLb_OPP24	sXYLb_OPP96
AT3G20820			Leucine-rich repeat (LRR) fami...		Lus10031824 [exp]	0	1
AT5G08580			Calcium-binding EF hand family...		Lus10010165 [exp]	2.8	0.8028
AT5G11420			Protein of unknown function, D...		Lus10008080 [exp]	3.0	0.8593
AT5G11420			Protein of unknown function, D...		Lus10013112 [exp]	3.9	0.8441
AT3G43720			Bifunctional inhibitor/lipid-t...		Lus10026769 [exp]	4.5	0.8172
AT4G38840			SAUR-like auxin-responsive pro...		Lus10010714 [exp]	5.7	0.8560
AT1G79720			Eukaryotic aspartyl protease f...		Lus10041621 [exp]	6.5	0.8140
AT4G34770			SAUR-like auxin-responsive pro...		Lus10025909 [exp]	12.0	0.8161
AT3G17130			Plant invertase/pectin methyle...		Lus10037791 [exp]	13.1	0.7963
AT4G34770			SAUR-like auxin-responsive pro...		Lus10038192 [exp]	13.2	0.8032
AT3G05100			S-adenosyl-L-methionine-depend...		Lus10004147 [exp]	13.4	0.7759

Compare expression of checked genes

Lus10031824 coexpression network

*The number of genes in the network is adjusted within 50 genes.
*Gene name represents symbol(s) of closest Arabidopsis gene if symbol(s) for the gene itself doesn't exist.
*Circle diameter represents the number of connection with other genes within this network.
*Color for gene name represents subnetwork based on the result of network clustering.