Plant FIBer expression Database

External link	JGI Phytozome v13 [genome browser]
Symbol
Arabidopsis homologues Show only best Show top 10	Locus ID BLAST score/e-value TF class Alias TAIR10 short description AT1G76320 624 / 0 FAR1_related FRS4 FAR1-related sequence 4 (.1.2) AT4G15090 466 / 4e-156 FAR1_related FAR1 FAR-RED IMPAIRED RESPONSE 1, FRS (FAR1 Related Sequences) transcription factor family (.1) AT3G22170 421 / 3e-138 FAR1_related FHY3 far-red elongated hypocotyls 3 (.1.2) AT4G19990 370 / 1e-119 FAR1_related FRS1 FAR1-related sequence 1 (.1.2) AT2G32250 348 / 5e-111 FAR1_related FRS2 FAR1-related sequence 2 (.1.2.3.4) AT4G38180 321 / 1e-100 FAR1_related FRS5 FAR1-related sequence 5 (.1) AT2G27110 317 / 7e-100 FAR1_related FRS3 FAR1-related sequence 3 (.1.2.3) AT1G52520 274 / 2e-83 FAR1_related FRS6 FAR1-related sequence 6 (.1) AT1G80010 264 / 1e-79 FAR1_related FRS8 FAR1-related sequence 8 (.1) AT4G38170 238 / 2e-71 FRS9 FAR1-related sequence 9 (.1)
Paralogs Show only best Show top 10	Gene ID BLAST score/e-value At best hit BLAST score/e-value TAIR10 short description Lus10010073 [exp] 55 / 1e-07 AT1G64260 155 / 3e-39 MuDR family transposase (.1)
Poplar homologues Show only best Show top 10	Locus ID BLAST score/e-value At best hit BLAST score/e-value TAIR10 short description Potri.003G207100 [exp] 731 / 0 AT1G76320 947 / 0.0 FAR1-related sequence 4 (.1.2) Potri.003G110300 [exp] 510 / 2e-172 AT4G15090 799 / 0.0 FAR-RED IMPAIRED RESPONSE 1, FRS (FAR1 Related Sequences) transcription factor family (.1) Potri.006G020700 [exp] 480 / 2e-161 AT3G22170 1184 / 0.0 far-red elongated hypocotyls 3 (.1.2) Potri.016G018300 [exp] 477 / 4e-160 AT3G22170 1139 / 0.0 far-red elongated hypocotyls 3 (.1.2) Potri.006G020600 [exp] 462 / 3e-154 AT4G15090 1078 / 0.0 FAR-RED IMPAIRED RESPONSE 1, FRS (FAR1 Related Sequences) transcription factor family (.1) Potri.016G018100 [exp] 429 / 3e-141 AT2G32250 793 / 0.0 FAR1-related sequence 2 (.1.2.3.4) Potri.004G209000 [exp] 334 / 2e-105 AT4G38180 1163 / 0.0 FAR1-related sequence 5 (.1) Potri.008G011800 [exp] 332 / 3e-104 AT2G27110 947 / 0.0 FAR1-related sequence 3 (.1.2.3) Potri.009G170100 [exp] 321 / 1e-100 AT4G38180 1145 / 0.0 FAR1-related sequence 5 (.1) Potri.003G031400 [exp] 314 / 3e-99 AT1G52520 931 / 0.0 FAR1-related sequence 6 (.1)
PFAM info	Clan ID Clan name Pfam ID Pfam name Pfam description PF04434 [flax] [poplar] SWIM SWIM zinc finger CL0219 [flax] [poplar] RNase_H PF10551 [flax] [poplar] MULE MULE transposase domain
Representative CDS sequence Show only first row Show all	>Lus10031825 pacid=23180721 polypeptide=Lus10031825 locus=Lus10031825.g ID=Lus10031825.BGIv1.0 annot-version=v1.0 ATGTCGTCCTCGAATCTGTTCCATTCTTATCGGAATGCAGGCTGTCTGGATGGGTATATGAGAAATCAGCATGATAAAGGTCGGAGCTTGGTCCTTGAGT CAGGGGATGCTCAGTTACTACTGGAATTCTGTACTCGTATGCAGGAAGAAAACCCGAAATTCTACTACGCAGTTGATTTGAACGAGCAGCATCAGTTGAG GAACTTGTTTTGGGTCGATGCGAAAGGCATCGAAGACTTCAACAACTTCGGCGATGTAGTATGCTTCGACACTAGGTATTTCACTAACAAGTATAGGATT CCTCTGGTTCTTTTCGTCGGATCCAATCATCACATTCAGCCTACATTGTTTGGATGTGCTTTGATTGCAGACGAGACGGTTTATACTCTTGTTTGGTTGC TCCAAACTTGGTCCGTGGCTATGGGCAATCGAGGTCCTCAGGTTATGCTCACTGATCAAAGTAACGACATTAAGACCGCTGTAGCTGCAGTATTTCCGAG AACGCGACATTGCTTTGGTTTATGGTATGTATTAGAGAAGGTTCCGAGGCAGCTCGAGTATTTAAGCCTCTGGACCGATGCTTTCTCCACGAAGTTCCAC AAATGTGTTTTTAAGTCATGGATGGAGGAGCAATTCGAAAAGAGATGGTCGAAATTGGTCGAGAAATTTCAGCTTAACGAGGTTGAATGGATTCAGTCGT TGTATTCAGATCGTAACTACTGGGTGCCTACCTTCCTCAAAGGTGTATCCTTTGCTGGTTTATCTGCTGAAAATTTGAACCTTTCATTCGACAAGTATGT GCAACGAGACACATCGGTCAAAGAGTTTGCGGAACGTTACAAAATGATTTTGGAAGACATGTATGAAGAGGAAGCGAAAGCAGATTTCGATGCGTGGCAT GAGGTTCCCGAGTTGAAATCACCGTCCCCTTTCGAGAAGCAAATGCACCTTGTGTACACTCACGAAATCTTCGAGAAGTTCCAAGTCGAGGTTTTGGGGG CGGCGGCTTGTCATTTTAGGAAGATGGAAACGGAAGATGAGACGACCACTACTTATGATGTGAAGGACTTTGAAGATAACCAGAGCTATGTGGTGGAAAG GAACGCTTCTGGACTGGAGATGTATTGTTCGTGTCGTTCGTTTGAGCTTAATGGCTATTTATGCAGGCATGCTATTGTGGTTCTTCAGATGTCGGGTATA TTCAGCATTCCATCGAAATATGTGTTGCAGAGGTGGACGAATGCTGCGAGGAGTAGGCATTCGGTTACTGAAAGACGAGATGAAGCGCAAAGGAAGATCC GCCGGTTTAACGATTTGTGTCGTAGAGCTATAATATTGGGTGAAGAAGGGTCACTTTCTGAAGAAAGTTATGATCTTGCACTAGCTGCCATCAAAGAGGG TTTAAAGCAATGCGGGACTGTGAATAACTCTGCTGCTCTAAATCCGGTATCCGGTACCGAAAAGGAGAATCAATGCAGCATCTCATCTGTAGACGAAGGA TCAATATCAAACAAAGCCCCGCGACTGTCCGAAACAGGAAAGGGCAAGGAAATCGTCGGAAAGGTTGGTGCTTTGGTGTGCGTTTATGCGAAATATCGAG ATTTTGACGATCTATTATGA
AA sequence Show only first row Show all	>Lus10031825 pacid=23180721 polypeptide=Lus10031825 locus=Lus10031825.g ID=Lus10031825.BGIv1.0 annot-version=v1.0 MSSSNLFHSYRNAGCLDGYMRNQHDKGRSLVLESGDAQLLLEFCTRMQEENPKFYYAVDLNEQHQLRNLFWVDAKGIEDFNNFGDVVCFDTRYFTNKYRI PLVLFVGSNHHIQPTLFGCALIADETVYTLVWLLQTWSVAMGNRGPQVMLTDQSNDIKTAVAAVFPRTRHCFGLWYVLEKVPRQLEYLSLWTDAFSTKFH KCVFKSWMEEQFEKRWSKLVEKFQLNEVEWIQSLYSDRNYWVPTFLKGVSFAGLSAENLNLSFDKYVQRDTSVKEFAERYKMILEDMYEEEAKADFDAWH EVPELKSPSPFEKQMHLVYTHEIFEKFQVEVLGAAACHFRKMETEDETTTTYDVKDFEDNQSYVVERNASGLEMYCSCRSFELNGYLCRHAIVVLQMSGI FSIPSKYVLQRWTNAARSRHSVTERRDEAQRKIRRFNDLCRRAIILGEEGSLSEESYDLALAAIKEGLKQCGTVNNSAALNPVSGTEKENQCSISSVDEG SISNKAPRLSETGKGKEIVGKVGALVCVYAKYRDFDDLL

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DESeq2's median of ratios [FLAX]

Order by: Tissue Experiment Show only core collection Show again Show schematic diagram

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Coexpressed genes

Compare expression of checked genes Schematic diagram [FLAX] Schematic diagram [POPLAR]

*If you select 4 or less genes and then press "compare expression", expression will be shown as a graph. If you select more than 4 genes, expresion will be shown as a heat map.
*Color represents relative expression level among samples for each gene.

At best	At TF class	At alias	At description		Locus	MR	r	Symbol	HYP	R_s2_CTR	R_s2_Fox	R_s4_CTR	R_s4_Fox	R_r1_CTR	R_r1_Fox	R_r3_CTR	R_r3_Fox	R_r1s2_CTR	R_r1s2_Fox	R_r3s2_CTR	R_r3s2_Fox	R_s6_CTR	R_s6_Al4	R_s6_Al12	R_s6_Al24	R_s8_CTR	R_s8_Al4	R_s8_Al12	R_s8_Al24	R_r5_CTR	R_r5_Al4	R_r5_Al12	R_r5_Al24	R_r7_CTR	R_r7_Al4	R_r7_Al12	R_r7_Al24	LEAF_N	LEAF_P	LEAF_NPK	SAM	AR_Bet	AR_rdf	cPAR	TOP_Bet	TOP_rdf	iFIBa	iFIBb	MID_Bet	MID_rdf	tFIBa	tFIB_Gr	tFIB_Li	tFIB_Bi	tFIBb	tFIBb_PUL8	tFIBb_PUL24	tFIBb_PUL96	tFIBb_OPP8	tFIBb_OPP24	tFIBb_OPP96	sXYLa	sXYLb	sXYLb_PUL8	sXYLb_PUL24	sXYLb_PUL96	sXYLb_OPP8	sXYLb_OPP24	sXYLb_OPP96
AT1G76320	FAR1_related	FRS4	FAR1-related sequence 4 (.1.2)		Lus10031825 [exp]	0	1
AT5G36210			alpha/beta-Hydrolases superfam...		Lus10021758 [exp]	1.7	0.8832
AT5G04670			Enhancer of polycomb-like tran...		Lus10008985 [exp]	5.0	0.8722
AT3G52250	MYB		Duplicated homeodomain-like su...		Lus10040386 [exp]	5.6	0.8957
AT2G47330			P-loop containing nucleoside t...		Lus10037527 [exp]	6.8	0.8877
AT1G69060			Chaperone DnaJ-domain superfam...		Lus10036825 [exp]	7.3	0.8520
AT1G34630			unknown protein		Lus10034188 [exp]	9.6	0.7774
AT3G23950			F-box family protein (.1)		Lus10007303 [exp]	12.8	0.8433
AT5G47360			Tetratricopeptide repeat (TPR)...		Lus10019160 [exp]	13.7	0.8253
AT3G52250	MYB		Duplicated homeodomain-like su...		Lus10023504 [exp]	18.7	0.8764
AT1G66950		ABCG39, PDR11, ...	ATP-binding cassette G39, plei...		Lus10028841 [exp]	20.5	0.8337

Compare expression of checked genes

Lus10031825 coexpression network

*The number of genes in the network is adjusted within 50 genes.
*Gene name represents symbol(s) of closest Arabidopsis gene if symbol(s) for the gene itself doesn't exist.
*Circle diameter represents the number of connection with other genes within this network.
*Color for gene name represents subnetwork based on the result of network clustering.