Plant FIBer expression Database

External link	JGI Phytozome v13 [genome browser]
Symbol
Arabidopsis homologues Show only best Show top 10	Locus ID BLAST score/e-value TF class Alias TAIR10 short description AT2G42280 169 / 2e-49 bHLH bHLH130 basic helix-loop-helix (bHLH) DNA-binding superfamily protein (.1), basic helix-loop-helix (bHLH) DNA-binding superfamily protein (.2) AT1G51140 152 / 9e-43 bHLH bHLH122 basic helix-loop-helix (bHLH) DNA-binding superfamily protein (.1) AT2G43140 131 / 2e-35 bHLH bHLH129 basic helix-loop-helix (bHLH) DNA-binding superfamily protein (.1), basic helix-loop-helix (bHLH) DNA-binding superfamily protein (.2) AT1G35460 121 / 4e-32 bHLH bHLH080 basic helix-loop-helix (bHLH) DNA-binding superfamily protein (.1) AT1G05805 118 / 3e-30 bHLH bHLH128 basic helix-loop-helix (bHLH) DNA-binding superfamily protein (.1) AT4G09180 115 / 6e-30 bHLH bHLH081 basic helix-loop-helix (bHLH) DNA-binding superfamily protein (.1) AT2G24260 84 / 4e-18 bHLH LRL1, bHLH066 LJRHL1-like 1 (.1) AT4G30980 83 / 7e-18 bHLH LRL2, bHLH069 LJRHL1-like 2 (.1) AT5G58010 81 / 5e-17 bHLH LRL3, bHLH082 LJRHL1-like 3 (.1) AT5G50915 80 / 9e-17 bHLH bHLH137 basic helix-loop-helix (bHLH) DNA-binding superfamily protein (.1), basic helix-loop-helix (bHLH) DNA-binding superfamily protein (.2)
Paralogs Show only best Show top 10	Gene ID BLAST score/e-value At best hit BLAST score/e-value TAIR10 short description Lus10031255 [exp] 372 / 4e-131 AT2G42280 172 / 5e-53 basic helix-loop-helix (bHLH) DNA-binding superfamily protein (.1), basic helix-loop-helix (bHLH) DNA-binding superfamily protein (.2) Lus10021023 [exp] 165 / 5e-46 AT3G12160 384 / 3e-132 ARABIDOPSIS THALIANA RAB GTPASE HOMOLOG A4D, RAB GTPase homolog A4D (.1) Lus10015704 [exp] 159 / 2e-45 AT2G42280 194 / 2e-58 basic helix-loop-helix (bHLH) DNA-binding superfamily protein (.1), basic helix-loop-helix (bHLH) DNA-binding superfamily protein (.2) Lus10037484 [exp] 159 / 2e-45 AT2G42280 191 / 2e-57 basic helix-loop-helix (bHLH) DNA-binding superfamily protein (.1), basic helix-loop-helix (bHLH) DNA-binding superfamily protein (.2) Lus10026733 [exp] 135 / 1e-38 AT2G43140 179 / 2e-56 basic helix-loop-helix (bHLH) DNA-binding superfamily protein (.1), basic helix-loop-helix (bHLH) DNA-binding superfamily protein (.2) Lus10025518 [exp] 131 / 4e-35 AT1G05805 242 / 2e-77 basic helix-loop-helix (bHLH) DNA-binding superfamily protein (.1) Lus10023829 [exp] 119 / 3e-30 AT3G12160 377 / 5e-132 ARABIDOPSIS THALIANA RAB GTPASE HOMOLOG A4D, RAB GTPase homolog A4D (.1) Lus10021846 [exp] 83 / 1e-17 AT2G24260 275 / 3e-90 LJRHL1-like 1 (.1) Lus10014726 [exp] 77 / 2e-16 AT4G02590 278 / 8e-96 unfertilized embryo sac 12, basic helix-loop-helix (bHLH) DNA-binding superfamily protein (.1), basic helix-loop-helix (bHLH) DNA-binding superfamily protein (.2), basic helix-loop-helix (bHLH) DNA-binding superfamily protein (.3)
Poplar homologues Show only best Show top 10	Locus ID BLAST score/e-value At best hit BLAST score/e-value TAIR10 short description Potri.003G207200 [exp] 276 / 3e-90 AT2G42280 221 / 2e-68 basic helix-loop-helix (bHLH) DNA-binding superfamily protein (.1), basic helix-loop-helix (bHLH) DNA-binding superfamily protein (.2) Potri.001G017300 [exp] 261 / 9e-85 AT1G51140 237 / 7e-75 basic helix-loop-helix (bHLH) DNA-binding superfamily protein (.1) Potri.016G050500 [exp] 183 / 9e-55 AT2G42280 296 / 2e-98 basic helix-loop-helix (bHLH) DNA-binding superfamily protein (.1), basic helix-loop-helix (bHLH) DNA-binding superfamily protein (.2) Potri.009G064700 [exp] 180 / 6e-53 AT2G42280 225 / 5e-70 basic helix-loop-helix (bHLH) DNA-binding superfamily protein (.1), basic helix-loop-helix (bHLH) DNA-binding superfamily protein (.2) Potri.006G057600 [exp] 176 / 2e-52 AT2G42280 278 / 3e-92 basic helix-loop-helix (bHLH) DNA-binding superfamily protein (.1), basic helix-loop-helix (bHLH) DNA-binding superfamily protein (.2) Potri.001G270000 [exp] 163 / 1e-46 AT2G42280 198 / 7e-60 basic helix-loop-helix (bHLH) DNA-binding superfamily protein (.1), basic helix-loop-helix (bHLH) DNA-binding superfamily protein (.2) Potri.002G231700 [exp] 137 / 1e-37 AT1G05805 274 / 6e-90 basic helix-loop-helix (bHLH) DNA-binding superfamily protein (.1) Potri.014G150600 [exp] 131 / 3e-35 AT1G05805 265 / 1e-86 basic helix-loop-helix (bHLH) DNA-binding superfamily protein (.1) Potri.013G107500 [exp] 124 / 2e-33 AT1G35460 223 / 1e-72 basic helix-loop-helix (bHLH) DNA-binding superfamily protein (.1) Potri.019G079900 [exp] 122 / 9e-33 AT1G35460 228 / 1e-74 basic helix-loop-helix (bHLH) DNA-binding superfamily protein (.1)
PFAM info	Clan ID Clan name Pfam ID Pfam name Pfam description PF00010 [flax] [poplar] HLH Helix-loop-helix DNA-binding domain
Representative CDS sequence Show only first row Show all	>Lus10031826 pacid=23180774 polypeptide=Lus10031826 locus=Lus10031826.g ID=Lus10031826.BGIv1.0 annot-version=v1.0 ATGGAACCAGATCTTCAGAAGCAAATGAATCCCGGCGGCGGATTGGCAAGGTACCAATCAGCTCCGAGCTCATACTTCACCAGCTACTTGGAGAAAGAGC TATGCGACGAGCTCTTCAACCGCCCGTCCAGCCCCGAAACAGAGAGATTCTTCGCCAGGTTCTTAGCTAACACCGCCGCCGAACCCGCCGCCGACGACGT TCTACTCTCCGATCAGAATCTCGCCCCGACTCCAGCTCCAGCTCCAGCTCCGGTTTTATCATCCGGATCGCAGCAGAGTTACTACCCAAGTCAATCTCGC CCGCCGCTGCCGGATTACAGAACGGCGAATTTGCCGCCGTTGCCTACGACGGTGAAATCTGAAGTCGGCGGCGTCGGCGACGGAGGAGGGGGAGGAGGGG GGAACAATTCGAATCTGGGGAGGCACAGAGGGATTGGAGATTTCGGAGCTAGCCGGCATCAGAATGCTTCATCATCAGGGAGGATGAGTCCTATTGCTGA GGTTGTTGATACTAAGTGCATCGTTTCCGAATCCAACAGACAGGAGAGTTCGAGTTTCGGAGATACTAATGCTGGTGGTGGTGAGTATGTTACTGGTTTC CCATGGGATGATACTCCTGGCATCATGTCTGGTGGGAAAGGCGGGCTTTCGGAGGATGACCGGACCTTCTCCGGTCTCAATGACTCCTCTCAGAATGTGG AGGGTGGAGGGAACAATCCGCCGATGTTGGCGCACCACTTGAGCCTGCCGAAAACGGCTGCAGAGATGTCTGCACTGGAGAAGCTGTTGCATCTTCAAGA TTCCGTGCCTTGCAAGATTCGTGCCAAGCGAGGCTTCGCCACTCATCCGAGAAGCATTGCTGAGAGGGTGAGGAGAACTCGAATCAGCGAACGGATGAGG AAACTGCAGGATCTGGTCCCAAACATGGACAAGCAAACCAACACAGCAGACATGTTGGATTTGGCTGTTGACTACATTAAAGATCTCCAAACACAAGTCA AAGTATGTATGGATTTAATGCTCATCTTACCAGAAGTATAA
AA sequence Show only first row Show all	>Lus10031826 pacid=23180774 polypeptide=Lus10031826 locus=Lus10031826.g ID=Lus10031826.BGIv1.0 annot-version=v1.0 MEPDLQKQMNPGGGLARYQSAPSSYFTSYLEKELCDELFNRPSSPETERFFARFLANTAAEPAADDVLLSDQNLAPTPAPAPAPVLSSGSQQSYYPSQSR PPLPDYRTANLPPLPTTVKSEVGGVGDGGGGGGGNNSNLGRHRGIGDFGASRHQNASSSGRMSPIAEVVDTKCIVSESNRQESSSFGDTNAGGGEYVTGF PWDDTPGIMSGGKGGLSEDDRTFSGLNDSSQNVEGGGNNPPMLAHHLSLPKTAAEMSALEKLLHLQDSVPCKIRAKRGFATHPRSIAERVRRTRISERMR KLQDLVPNMDKQTNTADMLDLAVDYIKDLQTQVKVCMDLMLILPEV

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DESeq2's median of ratios [FLAX]

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Coexpressed genes

Compare expression of checked genes Schematic diagram [FLAX] Schematic diagram [POPLAR]

*If you select 4 or less genes and then press "compare expression", expression will be shown as a graph. If you select more than 4 genes, expresion will be shown as a heat map.
*Color represents relative expression level among samples for each gene.

At best	At TF class	At alias	At description		Locus	MR	r	Symbol	HYP	R_s2_CTR	R_s2_Fox	R_s4_CTR	R_s4_Fox	R_r1_CTR	R_r1_Fox	R_r3_CTR	R_r3_Fox	R_r1s2_CTR	R_r1s2_Fox	R_r3s2_CTR	R_r3s2_Fox	R_s6_CTR	R_s6_Al4	R_s6_Al12	R_s6_Al24	R_s8_CTR	R_s8_Al4	R_s8_Al12	R_s8_Al24	R_r5_CTR	R_r5_Al4	R_r5_Al12	R_r5_Al24	R_r7_CTR	R_r7_Al4	R_r7_Al12	R_r7_Al24	LEAF_N	LEAF_P	LEAF_NPK	SAM	AR_Bet	AR_rdf	cPAR	TOP_Bet	TOP_rdf	iFIBa	iFIBb	MID_Bet	MID_rdf	tFIBa	tFIB_Gr	tFIB_Li	tFIB_Bi	tFIBb	tFIBb_PUL8	tFIBb_PUL24	tFIBb_PUL96	tFIBb_OPP8	tFIBb_OPP24	tFIBb_OPP96	sXYLa	sXYLb	sXYLb_PUL8	sXYLb_PUL24	sXYLb_PUL96	sXYLb_OPP8	sXYLb_OPP24	sXYLb_OPP96
AT1G51140	bHLH	bHLH122	basic helix-loop-helix (bHLH) ...		Lus10031826 [exp]	0	1
AT2G42280	bHLH	bHLH130	basic helix-loop-helix (bHLH) ...		Lus10031255 [exp]	2.2	0.6902
AT2G41250			Haloacid dehalogenase-like hyd...		Lus10027299 [exp]	9.2	0.6495
AT1G75180			Erythronate-4-phosphate dehydr...		Lus10016311 [exp]	14.8	0.6276
AT1G01860		PFC1	PALEFACE 1, Ribosomal RNA aden...		Lus10009319 [exp]	19.7	0.6102
AT1G31814		FRL2	FRIGIDA like 2 (.1)		Lus10032466 [exp]	20.9	0.6509
AT4G17090		CT-BMY, BMY8, B...	BETA-AMYLASE 8, BETA-AMYLASE 3...		Lus10040134 [exp]	21.4	0.6273
AT4G38960	CO		B-box type zinc finger family ...		Lus10031087 [exp]	22.5	0.5965
AT2G01570	GRAS	RGA1	REPRESSOR OF GA1-3 1, REPRESSO...		Lus10017626 [exp]	24.9	0.6122
AT3G54500			unknown protein		Lus10024170 [exp]	33.2	0.5808
AT3G47620	TCP	AtTCP14, TCP14	"TEOSINTE BRANCHED, cycloidea ...		Lus10008621 [exp]	35.8	0.5881

Compare expression of checked genes

Lus10031826 coexpression network

*The number of genes in the network is adjusted within 50 genes.
*Gene name represents symbol(s) of closest Arabidopsis gene if symbol(s) for the gene itself doesn't exist.
*Circle diameter represents the number of connection with other genes within this network.
*Color for gene name represents subnetwork based on the result of network clustering.