Plant FIBer expression Database

External link	JGI Phytozome v13 [genome browser]
Symbol
Arabidopsis homologues Show only best Show top 10	Locus ID BLAST score/e-value TF class Alias TAIR10 short description AT5G12930 270 / 3e-86 unknown protein
Paralogs Show only best Show top 10	Gene ID BLAST score/e-value At best hit BLAST score/e-value TAIR10 short description Lus10031256 [exp] 661 / 0 AT5G12930 310 / 5e-102 unknown protein
Poplar homologues Show only best Show top 10	Locus ID BLAST score/e-value At best hit BLAST score/e-value TAIR10 short description Potri.003G207400 [exp] 358 / 3e-120 AT5G12930 305 / 2e-99 unknown protein Potri.001G017100 [exp] 350 / 5e-117 AT5G12930 310 / 4e-101 unknown protein Potri.003G207500 [exp] 247 / 7e-77 AT5G12930 226 / 1e-68 unknown protein
PFAM info
Representative CDS sequence Show only first row Show all	>Lus10031827 pacid=23180810 polypeptide=Lus10031827 locus=Lus10031827.g ID=Lus10031827.BGIv1.0 annot-version=v1.0 ATGGAAGAGCCCGACGGCTTCCACGGCGGCTCCTACTTTCCTCCTCCGCCGCCTCTGGTTTCTTTCACTCCGGCGGTGCCTTCTCGCCGTTGGCGTATCT CATCGTCCTGTTTCACGCCGACGAACCTTCAGCCGCTCACCTCGTCTCGGAACTTCGCTTGGGTGTCTCTCGAAGGACGCCTCGTCAACGCCGAGGAAGC CAGCTCGGCGAAATCCATCGGAGGGAGTTTGGGAAAGGACGAAGCTTTGGCTTGGGAGCTCTTCACTCCGATTCAGAGGTTTCTCATTGTCGCTGTGATT GGCGTCGCCGCTTCCGAGTCGCGGAAGAATCGGACCATCTCCCAGCTCAAGAACATTGAATTCCCGTTCATGATTTTGCAGGATGAGGTGCTGTCGAGTA TGCAGGATAAGCTCGACAATCTGTGCGAGCAGATGGTTAGCATCAAGGGACAGGGAGCTAAGGATTCTGAAGAGAAATCGAACGAATTCGGTGGTGATAA GATTAAGTTCGTCGATTGCGGATGTTGGCACTGTGATGAACACTACCAGGAACTGTTTGGTGGTTCTATGGGGAAAGTGTCATGCGGTGAAGTTGATGCA ACGATGGAGTTCAAAAGGGGAAACCTGGAGGAGCAAGAAGAGAGGCGAATGTCTGATTTGTCTGATTGGGCTTCAAGTTCTGTGTCCGCTTCAGAATTCC AGGTGGCTAACTATGCGGTAGACCAAGATGTATGCAACCTGAAGAAAAAGTGCGAAGAGAAGGACGCAACCATCAAGGATCTAACCGATGTTCTTCAGTT AACAGACAATGCAGGTTCAAAGAGAGTTGCAGAGTTGGAAGACATCATATCCCGGAAGAATTCGGTGATTACTAGACTCAAGAAGGACATGCTGGTTCTA GAACAGAAGGTGGTTCAGCTGACAAGGGCACGGAGGAAATCATGTTCAAATGCAACAACCCTCGAGTTTGAGCAAGCTCCTCCATTGATGCTGGACAACA TAATATACGACATGGATAGCTTGACCAGCTCTTGTTCTTCTTCTTCTTCCTCATCGGAATCAGATTCTCCTAAATTAAGAAGGAATTCGCTTCCGGCTAC GAAGTTTTGTCAGAAATCAGCTCCAGCAATGGAACAACAGACTAGACCAGTAAGCCCTCTGAAAGAAATATCACCAAATCAAAAGCACAGCAGAGCACCT GCATTGAGGCCAAAGCAGTTGTCAGCTAATGGCGACATCAAGAAGATGAGAAGAAAGCCTCAAGCTGCATCGTCGAGTTCGGTTTCGAAGAAGAGATGGG CGTAA
AA sequence Show only first row Show all	>Lus10031827 pacid=23180810 polypeptide=Lus10031827 locus=Lus10031827.g ID=Lus10031827.BGIv1.0 annot-version=v1.0 MEEPDGFHGGSYFPPPPPLVSFTPAVPSRRWRISSSCFTPTNLQPLTSSRNFAWVSLEGRLVNAEEASSAKSIGGSLGKDEALAWELFTPIQRFLIVAVI GVAASESRKNRTISQLKNIEFPFMILQDEVLSSMQDKLDNLCEQMVSIKGQGAKDSEEKSNEFGGDKIKFVDCGCWHCDEHYQELFGGSMGKVSCGEVDA TMEFKRGNLEEQEERRMSDLSDWASSSVSASEFQVANYAVDQDVCNLKKKCEEKDATIKDLTDVLQLTDNAGSKRVAELEDIISRKNSVITRLKKDMLVL EQKVVQLTRARRKSCSNATTLEFEQAPPLMLDNIIYDMDSLTSSCSSSSSSSESDSPKLRRNSLPATKFCQKSAPAMEQQTRPVSPLKEISPNQKHSRAP ALRPKQLSANGDIKKMRRKPQAASSSSVSKKRWA

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DESeq2's median of ratios [FLAX]

Order by: Tissue Experiment Show only core collection Show again Show schematic diagram

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Coexpressed genes

Compare expression of checked genes Schematic diagram [FLAX] Schematic diagram [POPLAR]

*If you select 4 or less genes and then press "compare expression", expression will be shown as a graph. If you select more than 4 genes, expresion will be shown as a heat map.
*Color represents relative expression level among samples for each gene.

At best	At TF class	At alias	At description		Locus	MR	r	Symbol	HYP	R_s2_CTR	R_s2_Fox	R_s4_CTR	R_s4_Fox	R_r1_CTR	R_r1_Fox	R_r3_CTR	R_r3_Fox	R_r1s2_CTR	R_r1s2_Fox	R_r3s2_CTR	R_r3s2_Fox	R_s6_CTR	R_s6_Al4	R_s6_Al12	R_s6_Al24	R_s8_CTR	R_s8_Al4	R_s8_Al12	R_s8_Al24	R_r5_CTR	R_r5_Al4	R_r5_Al12	R_r5_Al24	R_r7_CTR	R_r7_Al4	R_r7_Al12	R_r7_Al24	LEAF_N	LEAF_P	LEAF_NPK	SAM	AR_Bet	AR_rdf	cPAR	TOP_Bet	TOP_rdf	iFIBa	iFIBb	MID_Bet	MID_rdf	tFIBa	tFIB_Gr	tFIB_Li	tFIB_Bi	tFIBb	tFIBb_PUL8	tFIBb_PUL24	tFIBb_PUL96	tFIBb_OPP8	tFIBb_OPP24	tFIBb_OPP96	sXYLa	sXYLb	sXYLb_PUL8	sXYLb_PUL24	sXYLb_PUL96	sXYLb_OPP8	sXYLb_OPP24	sXYLb_OPP96
AT5G12930			unknown protein		Lus10031827 [exp]	0	1
AT5G37010			unknown protein		Lus10007363 [exp]	5.1	0.9247
AT1G67820			Protein phosphatase 2C family ...		Lus10006222 [exp]	5.4	0.9386
AT1G76310		CYCB2;4	CYCLIN B2;4 (.1)		Lus10030746 [exp]	8.5	0.9343
AT2G23530			Zinc-finger domain of monoamin...		Lus10019647 [exp]	9.5	0.9257
AT4G33400			Vacuolar import/degradation, V...		Lus10021729 [exp]	9.8	0.9372
AT1G76310		CYCB2;4	CYCLIN B2;4 (.1)		Lus10013226 [exp]	11.0	0.9319
AT5G12930			unknown protein		Lus10031256 [exp]	11.6	0.8903
AT4G33400			Vacuolar import/degradation, V...		Lus10042656 [exp]	13.0	0.9340
AT3G27330			zinc finger (C3HC4-type RING f...		Lus10032119 [exp]	13.4	0.9130
AT5G25380		CYCA2;1	cyclin a2;1 (.1)		Lus10013140 [exp]	14.0	0.9339

Compare expression of checked genes

Lus10031827 coexpression network

*The number of genes in the network is adjusted within 50 genes.
*Gene name represents symbol(s) of closest Arabidopsis gene if symbol(s) for the gene itself doesn't exist.
*Circle diameter represents the number of connection with other genes within this network.
*Color for gene name represents subnetwork based on the result of network clustering.