Plant FIBer expression Database

External link	JGI Phytozome v13 [genome browser]
Symbol
Arabidopsis homologues Show only best Show top 10	Locus ID BLAST score/e-value TF class Alias TAIR10 short description AT4G12070 410 / 1e-139 unknown protein
Paralogs Show only best Show top 10	Gene ID BLAST score/e-value At best hit BLAST score/e-value TAIR10 short description Lus10031257 [exp] 733 / 0 AT4G12070 548 / 0.0 unknown protein
Poplar homologues Show only best Show top 10	Locus ID BLAST score/e-value At best hit BLAST score/e-value TAIR10 short description Potri.001G017000 [exp] 472 / 4e-163 AT4G12070 543 / 0.0 unknown protein Potri.003G207600 [exp] 466 / 9e-162 AT4G12070 546 / 0.0 unknown protein Potri.018G050100 [exp] 103 / 3e-23 AT4G12070 133 / 6e-33 unknown protein
PFAM info
Representative CDS sequence Show only first row Show all	>Lus10031828 pacid=23180616 polypeptide=Lus10031828 locus=Lus10031828.g ID=Lus10031828.BGIv1.0 annot-version=v1.0 ATGGACCGATCATCGGCCACCGTCGCCTCCGTCAACTCCTCGCCGGACAGCCCCACGCGCGCCTCCAGGTCGACGATGGTCCTCTCGATCGACTGCCTGA AGGGCAGCTCCAAGGCCGACGAGTGGACCGGCGACCTCCTCCAGACAGGGGACATCGTCGAGGAGATCGTCATACCCGGGTCAGGTCGCGGCGGGTCCTG GCCCGGATGCGGAGAGGCGTACGCAGAGTCGGGTAAACGCGGGCCGAGTTCGAGTGTTTCGATTTGCAAGTTAGGAATGTTGAACATTAAAATTCTCTTT CCACCTAAAATTGGTGATTTTAGGAATGATAATGCGTCCGGGTTCGGGACGGGTACCTTAGCCCGAGCGGGTTCAAAAGGGTCAAGGATGGTGAGTGCAC TATCAACAGCAAAGCTCCAAGATGGGTATGTAGCATACCCATGGAAGAGGAAAATGCAAGAAGTTCTCCCCATTCCAAACTCAAGCGTCTTCCTCTCCAT CCTCCTTCTCCCCGAGGCATCATCATCATCCGATCGAGTCGCGACTCGCTGCAATGACCTCGACCACACCCTCGCCAGGGCCAACACGTGGCTCTTTGCC TCGCAAGCCTCTGGTGTCCCTGTGGTCTTCACGAACGTCCAGACGGAGTCCCTCCTCACCAAGATATCTGGTGGTGACATGTCCACTCCGATTGTGACTA CTGGCTCGCTCTCCGACCTCTCCAAGCTCGTGAACGCTAGCTTGTATGGGTTCGAGGACTACCACGGGGTGGACCTAGGCGTGGTGAGGGCCGTCCGCTT GTGGTACGCCCCGCTATGTGGGGAGTCCTCGATCGAGATCAGGATCAAGGAGGATGACTGCAAGCTCGGGTTCGCGATTAGCAGGACCGAAGAAGGGTTC ATCTACATTTCGTCGGTGATGGACGGTGGTGGCAGTGATGACAATGTTGCCTCGACTAGGTCAGGGCTTAGTCACCTCTACAAGGAAGCGTCGGCCGCTT CGAAGTTGTTGGTCGTTTCGAGGGTGTGTAACGAAAAGGTGCTGCCCTGGATGGTTAGTTCCACGGGCGCTGTCAGATGTTATGACACCGTTTCATTGAG CCAGAAACTGTCTCTCCACCTGCACGCTAATGTCCCCATTGTGATACATTACTTGGTGTGGGACAGGGCATTGGTGGCTAGTCGTCCTGGCTCAATCAGC ACAAGGTTTGGTGGGTATGTGGGGATATCGCGACCTGATGATCAAAACCAAGTGATCGCGCTTCCTCTCCCTCTTCCATCGCCTCCTCAAGTGGATTCCA GTGATGTTGATGCTAGTGCTGGTGGTGGAACGGGGCCGGAAGTTAGGCTTCAACGAGATACCGCGGGTGAACTTTCGTTTCGATTTCACGAGTTCTCGAT TTCCAACAACTGGGTATGA
AA sequence Show only first row Show all	>Lus10031828 pacid=23180616 polypeptide=Lus10031828 locus=Lus10031828.g ID=Lus10031828.BGIv1.0 annot-version=v1.0 MDRSSATVASVNSSPDSPTRASRSTMVLSIDCLKGSSKADEWTGDLLQTGDIVEEIVIPGSGRGGSWPGCGEAYAESGKRGPSSSVSICKLGMLNIKILF PPKIGDFRNDNASGFGTGTLARAGSKGSRMVSALSTAKLQDGYVAYPWKRKMQEVLPIPNSSVFLSILLLPEASSSSDRVATRCNDLDHTLARANTWLFA SQASGVPVVFTNVQTESLLTKISGGDMSTPIVTTGSLSDLSKLVNASLYGFEDYHGVDLGVVRAVRLWYAPLCGESSIEIRIKEDDCKLGFAISRTEEGF IYISSVMDGGGSDDNVASTRSGLSHLYKEASAASKLLVVSRVCNEKVLPWMVSSTGAVRCYDTVSLSQKLSLHLHANVPIVIHYLVWDRALVASRPGSIS TRFGGYVGISRPDDQNQVIALPLPLPSPPQVDSSDVDASAGGGTGPEVRLQRDTAGELSFRFHEFSISNNWV

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DESeq2's median of ratios [FLAX]

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Coexpressed genes

Compare expression of checked genes Schematic diagram [FLAX] Schematic diagram [POPLAR]

*If you select 4 or less genes and then press "compare expression", expression will be shown as a graph. If you select more than 4 genes, expresion will be shown as a heat map.
*Color represents relative expression level among samples for each gene.

At best	At TF class	At alias	At description		Locus	MR	r	Symbol	HYP	R_s2_CTR	R_s2_Fox	R_s4_CTR	R_s4_Fox	R_r1_CTR	R_r1_Fox	R_r3_CTR	R_r3_Fox	R_r1s2_CTR	R_r1s2_Fox	R_r3s2_CTR	R_r3s2_Fox	R_s6_CTR	R_s6_Al4	R_s6_Al12	R_s6_Al24	R_s8_CTR	R_s8_Al4	R_s8_Al12	R_s8_Al24	R_r5_CTR	R_r5_Al4	R_r5_Al12	R_r5_Al24	R_r7_CTR	R_r7_Al4	R_r7_Al12	R_r7_Al24	LEAF_N	LEAF_P	LEAF_NPK	SAM	AR_Bet	AR_rdf	cPAR	TOP_Bet	TOP_rdf	iFIBa	iFIBb	MID_Bet	MID_rdf	tFIBa	tFIB_Gr	tFIB_Li	tFIB_Bi	tFIBb	tFIBb_PUL8	tFIBb_PUL24	tFIBb_PUL96	tFIBb_OPP8	tFIBb_OPP24	tFIBb_OPP96	sXYLa	sXYLb	sXYLb_PUL8	sXYLb_PUL24	sXYLb_PUL96	sXYLb_OPP8	sXYLb_OPP24	sXYLb_OPP96
AT4G12070			unknown protein		Lus10031828 [exp]	0	1
AT4G12070			unknown protein		Lus10031257 [exp]	1.0	0.9318
AT1G18980			RmlC-like cupins superfamily p...		Lus10036658 [exp]	3.9	0.8938
AT4G21160		ZAC, AGD12	ARF-GAP domain 12, Calcium-dep...		Lus10023265 [exp]	9.5	0.8838
AT1G28480		roxy19, GRX480	Thioredoxin superfamily protei...		Lus10018631 [exp]	16.0	0.8841
AT5G56350			Pyruvate kinase family protein...		Lus10013396 [exp]	18.3	0.8715
AT1G63290			Aldolase-type TIM barrel famil...		Lus10032052 [exp]	19.1	0.8709
AT4G27270			Quinone reductase family prote...		Lus10006748 [exp]	28.0	0.8624
AT2G48010		RKF3	receptor-like kinase in in flo...		Lus10008187 [exp]	30.0	0.8904
AT2G40890		REF8, CYP98A3, ...	cytochrome P450, family 98, su...		Lus10020847 [exp]	34.9	0.8599
AT2G31390		STH	pfkB-like carbohydrate kinase ...		Lus10009526 [exp]	35.0	0.8783

Compare expression of checked genes

Lus10031828 coexpression network

*The number of genes in the network is adjusted within 50 genes.
*Gene name represents symbol(s) of closest Arabidopsis gene if symbol(s) for the gene itself doesn't exist.
*Circle diameter represents the number of connection with other genes within this network.
*Color for gene name represents subnetwork based on the result of network clustering.