Plant FIBer expression Database

External link	JGI Phytozome v13 [genome browser]
Symbol
Arabidopsis homologues Show only best Show top 10	Locus ID BLAST score/e-value TF class Alias TAIR10 short description AT5G12950 1078 / 0 Putative glycosyl hydrolase of unknown function (DUF1680) (.1) AT5G12960 1070 / 0 Putative glycosyl hydrolase of unknown function (DUF1680) (.1)
Paralogs Show only best Show top 10	Gene ID BLAST score/e-value At best hit BLAST score/e-value TAIR10 short description Lus10031258 [exp] 1608 / 0 AT5G12950 1128 / 0.0 Putative glycosyl hydrolase of unknown function (DUF1680) (.1)
Poplar homologues Show only best Show top 10	Locus ID BLAST score/e-value At best hit BLAST score/e-value TAIR10 short description Potri.001G018200 [exp] 1249 / 0 AT5G12950 1190 / 0.0 Putative glycosyl hydrolase of unknown function (DUF1680) (.1) Potri.003G206000 [exp] 1247 / 0 AT5G12950 1154 / 0.0 Putative glycosyl hydrolase of unknown function (DUF1680) (.1)
PFAM info	Clan ID Clan name Pfam ID Pfam name Pfam description CL0059 [flax] [poplar] 6_Hairpin PF07944 [flax] [poplar] Glyco_hydro_127 Beta-L-arabinofuranosidase, GH127
Representative CDS sequence Show only first row Show all	>Lus10031829 pacid=23180653 polypeptide=Lus10031829 locus=Lus10031829.g ID=Lus10031829.BGIv1.0 annot-version=v1.0 ATGTTCTCTCATTACCACGACGATGATCATTTGATTCCGACTGACGACTCAGCTTGGGCCAATCTGTTGCCCAGGAAGGTTTTGAGGGAGGAAGAGGAGT TCAACTGGGCAATGGAGTACAGAAAGATGAAGAATCCTTCTGAGAGGCTTTCTGGTGGTGGGAGTTTCTTAAAGGAAGTGTCTTTGCACAATGTGAGGCT GGATCCTAGCTCCTTGCATTGGAGGGCTCAGCAGACCAATTTGGAGTACTTGCTGATGTTGGATGTTGATAGGCTGGTTTGGAGCTTCAGGAAGGAAGCT GGGTTTCCGAGTCCCGGAACTCCTTATGGTGGCTGGGAAGGTGCTGATGTTGAGCTCAGAGGCCATTTTGTCGGACACTACATGAGTGCTACAGCAATGA TGTATGCCAGCACGCACAATGACACTCTCAAAGAGAAAATGTCAGCTGTTGTGTCAGCTCTATCGAAATGCCAAGAGAAAATCGGCACAGGCTATCTATC TGCTTTCCCAGAGGAGTTTTTCGACCGTTTCGAGGCTGTGCAGCCTGTCTGGGCTCCTTATTACACCATTCACAAGATCATGGCAGGTCTCTTGGATCAG TACATCTTTGCCAACAATGCTCAAGCTCTAAAGATGGTGACATGGATGGCTGACTATTTCTATGGACGTGTCCAGAATGTCATAAGCAAATACACCATAG AGCGACATTTTCGATCACAGAACGAAGAAACTGGTGGCATGAACGATATTCTCTACAAACTGTACAGCGTAACGGGGAATCCCAAGCATCAGATGCTAGG TCACCTCTTTGACAAGCCATGCTTCCTCGGCCTACTCGCAATGCAGGCTGACGACATTTCAGGATTCCATTCAAATACTCACATCCCAATTGTCATTGGG ACACAAATGCGTTACGAACTCACTGGCGACACGCTTTACAAGGATATTGGGACATACTTCATGGCGATTGTAAACTCTTCTCACAGTTATGCAACTGGTG GGACATCAGTCGGTGAGTTCTGGTCGGATCCAAAGAGGTTGGCCGGGACACTACAAACCGAGAACGAAGAATCGTGCACGACTTACAACATGCTCAAAGT CTCGCGTCATCTCTTTCGCTGGACCAAAGAAATTGCGTACGTAGACTATTATGAGCGTGCCATTACCAATGGAGTCCTAGGCATCCAAAGAGGAACAGAA CCTGGAGTGATGATTTACATGCTTCCACAAGCTCCTGGCAGTTCCAAGGGGAGAAGCTACCATGGATGGGGGACACCTGATTCATCCTTCTGGTGCTGCT ATGGAACAGGAATCGAGTCGTTTTCAAAATTGGGAGATTCGATATACTTCGAAGAGGAAGGAAGTGCCCCCGGACTCTACATCACTCAATACATTTCGAG CTCCTTCGACTGGGAATCCGGACAGATCTTGCTCAGCCAGAAAGTCGACCCTGTCGTCTCTTCGGACCCTTTTCTTCGAGTCACATTGACAGTTTCTCCC AAAGAGGGTTCCAGTCAGTCATCTACTCTGAATCTGAGGATACCAAGCTGGACCGATGTAGATGGCGTGGAAGCAGCGTTGAATTCGAAAAGTTTGCCTC TACCTGCTCTAGGAAACTTCCTTTCTGTGACTAAGAAATGGAGCAGCAGTGACAAGTTGACACTTCAGCTGCCTCTCAGTTTGCAAACAGAAGCCATAAA AGATGACAGGTCCGAGTATTCCTCCATAATGGCTATCCTCTATGGGCCCAACTTACTTGCTGGATACACCAGTGGTGAATGGAACCTGAAACTCGGGTCA ACCCTCTCTGATTCGATCACCCCTATCCCTTCTGCACACAACAGCCAACTACTCACCCTCTCACAGGAGTCTGGAACTCAGACTTTCGTCGTGACAAACA CAAACGAATCGTCGATCACAATGGAAAAGCTGCCGACTCCTGGCACAGATGCTTCTGTCCACGCAACATTCAGACTCATCTCGAAAAGCACGAAGCACTC TTCCACGAAGCTCGAAGATCTCGTAGGCGAAGAAGTGATGTTAGAGCCGTTTCATCTTCCGGGGATGGTCCTGATGCAGCAAGGAAAGGATCAGGCGATT CTGCTTAAAGAAGCTAGCTTTGTTGCAAAAGACCAGTCAGGTGAATTCCTAGTGGTGTCAGGATTGGATGGGAAGGAAGGTAGCGTGTCTTTCGAGTCGG TTATCCAGAAGGGCTGCTTTGTGTTCAGTGGTGTTGGTTATGGTTCAGGAGCAACCCTGAAGCTGAGCTGCAGGAATTCGAGTCAGGAATTCGGTAAAGG AGCAAGCTTTACGCCGAATCAAGGGCTTAGCAAGTACCATGACATCAGCTTTGTTGCAAAGGGGGATACCAGGAATTTTGTTCTGGCGCCATTGCATAGC TTCAGGGATGAGTCTTATACTGTTTACTTCCACTTCCGTTAG
AA sequence Show only first row Show all	>Lus10031829 pacid=23180653 polypeptide=Lus10031829 locus=Lus10031829.g ID=Lus10031829.BGIv1.0 annot-version=v1.0 MFSHYHDDDHLIPTDDSAWANLLPRKVLREEEEFNWAMEYRKMKNPSERLSGGGSFLKEVSLHNVRLDPSSLHWRAQQTNLEYLLMLDVDRLVWSFRKEA GFPSPGTPYGGWEGADVELRGHFVGHYMSATAMMYASTHNDTLKEKMSAVVSALSKCQEKIGTGYLSAFPEEFFDRFEAVQPVWAPYYTIHKIMAGLLDQ YIFANNAQALKMVTWMADYFYGRVQNVISKYTIERHFRSQNEETGGMNDILYKLYSVTGNPKHQMLGHLFDKPCFLGLLAMQADDISGFHSNTHIPIVIG TQMRYELTGDTLYKDIGTYFMAIVNSSHSYATGGTSVGEFWSDPKRLAGTLQTENEESCTTYNMLKVSRHLFRWTKEIAYVDYYERAITNGVLGIQRGTE PGVMIYMLPQAPGSSKGRSYHGWGTPDSSFWCCYGTGIESFSKLGDSIYFEEEGSAPGLYITQYISSSFDWESGQILLSQKVDPVVSSDPFLRVTLTVSP KEGSSQSSTLNLRIPSWTDVDGVEAALNSKSLPLPALGNFLSVTKKWSSSDKLTLQLPLSLQTEAIKDDRSEYSSIMAILYGPNLLAGYTSGEWNLKLGS TLSDSITPIPSAHNSQLLTLSQESGTQTFVVTNTNESSITMEKLPTPGTDASVHATFRLISKSTKHSSTKLEDLVGEEVMLEPFHLPGMVLMQQGKDQAI LLKEASFVAKDQSGEFLVVSGLDGKEGSVSFESVIQKGCFVFSGVGYGSGATLKLSCRNSSQEFGKGASFTPNQGLSKYHDISFVAKGDTRNFVLAPLHS FRDESYTVYFHFR

---

DESeq2's median of ratios [FLAX]

Order by: Tissue Experiment Show only core collection Show again Show schematic diagram

---

Coexpressed genes

Compare expression of checked genes Schematic diagram [FLAX] Schematic diagram [POPLAR]

*If you select 4 or less genes and then press "compare expression", expression will be shown as a graph. If you select more than 4 genes, expresion will be shown as a heat map.
*Color represents relative expression level among samples for each gene.

At best	At TF class	At alias	At description		Locus	MR	r	Symbol	HYP	R_s2_CTR	R_s2_Fox	R_s4_CTR	R_s4_Fox	R_r1_CTR	R_r1_Fox	R_r3_CTR	R_r3_Fox	R_r1s2_CTR	R_r1s2_Fox	R_r3s2_CTR	R_r3s2_Fox	R_s6_CTR	R_s6_Al4	R_s6_Al12	R_s6_Al24	R_s8_CTR	R_s8_Al4	R_s8_Al12	R_s8_Al24	R_r5_CTR	R_r5_Al4	R_r5_Al12	R_r5_Al24	R_r7_CTR	R_r7_Al4	R_r7_Al12	R_r7_Al24	LEAF_N	LEAF_P	LEAF_NPK	SAM	AR_Bet	AR_rdf	cPAR	TOP_Bet	TOP_rdf	iFIBa	iFIBb	MID_Bet	MID_rdf	tFIBa	tFIB_Gr	tFIB_Li	tFIB_Bi	tFIBb	tFIBb_PUL8	tFIBb_PUL24	tFIBb_PUL96	tFIBb_OPP8	tFIBb_OPP24	tFIBb_OPP96	sXYLa	sXYLb	sXYLb_PUL8	sXYLb_PUL24	sXYLb_PUL96	sXYLb_OPP8	sXYLb_OPP24	sXYLb_OPP96
AT5G12950			Putative glycosyl hydrolase of...		Lus10031829 [exp]	0	1
AT3G20860		ATNEK5	NIMA-related kinase 5 (.1)		Lus10031834 [exp]	4.0	0.9409
AT1G24764		ATMAP70-2	microtubule-associated protein...		Lus10039069 [exp]	5.8	0.9317
AT5G12950			Putative glycosyl hydrolase of...		Lus10031258 [exp]	6.0	0.9191
AT2G38080		ATLMCO4, IRX12,...	LACCASE 4, IRREGULAR XYLEM 12,...		Lus10021133 [exp]	9.2	0.9239
AT5G59810		ATSBT5.4	Subtilase family protein (.1)		Lus10032425 [exp]	12.0	0.9299
AT3G22640		PAP85	cupin family protein (.1)		Lus10022072 [exp]	13.0	0.9195
AT5G01930		MAN6, AtMAN6	endo-beta-mannase 6, Glycosyl ...		Lus10014184 [exp]	15.7	0.9291
AT4G17220		ATMAP70-5	microtubule-associated protein...		Lus10038790 [exp]	15.9	0.9216
AT2G04160		AIR3	AUXIN-INDUCED IN ROOT CULTURES...		Lus10032424 [exp]	15.9	0.9150
					Lus10028069 [exp]	18.2	0.9177

Compare expression of checked genes

Lus10031829 coexpression network

*The number of genes in the network is adjusted within 50 genes.
*Gene name represents symbol(s) of closest Arabidopsis gene if symbol(s) for the gene itself doesn't exist.
*Circle diameter represents the number of connection with other genes within this network.
*Color for gene name represents subnetwork based on the result of network clustering.