Plant FIBer expression Database

External link	JGI Phytozome v13 [genome browser]
Symbol
Arabidopsis homologues Show only best Show top 10	Locus ID BLAST score/e-value TF class Alias TAIR10 short description AT1G51170 411 / 1e-142 Protein kinase superfamily protein (.1) AT3G20830 407 / 7e-141 AGC (cAMP-dependent, cGMP-dependent and protein kinase C) kinase family protein (.1) AT4G13000 240 / 5e-76 AGC (cAMP-dependent, cGMP-dependent and protein kinase C) kinase family protein (.1) AT3G25250 237 / 3e-74 AtOXI1, OXI1, AGC2-1 oxidative signal-inducible1, AGC (cAMP-dependent, cGMP-dependent and protein kinase C) kinase family protein (.1) AT3G44610 220 / 2e-67 Protein kinase superfamily protein (.1) AT3G12690 222 / 7e-67 AGC1.5 AGC kinase 1.5 (.1.2.3) AT2G34650 217 / 3e-66 ABR, PID PINOID, ABRUPTUS, Protein kinase superfamily protein (.1) AT5G55910 216 / 3e-65 D6PK D6 protein kinase (.1) AT5G47750 215 / 3e-64 PK5, D6PKL2 D6 protein kinase like 2 (.1) AT5G40030 213 / 3e-64 Protein kinase superfamily protein (.1)
Paralogs Show only best Show top 10	Gene ID BLAST score/e-value At best hit BLAST score/e-value TAIR10 short description Lus10031259 [exp] 382 / 3e-133 AT3G20830 257 / 2e-84 AGC (cAMP-dependent, cGMP-dependent and protein kinase C) kinase family protein (.1) Lus10025882 [exp] 252 / 1e-79 AT3G25250 434 / 2e-150 oxidative signal-inducible1, AGC (cAMP-dependent, cGMP-dependent and protein kinase C) kinase family protein (.1) Lus10038221 [exp] 250 / 5e-79 AT3G25250 434 / 1e-150 oxidative signal-inducible1, AGC (cAMP-dependent, cGMP-dependent and protein kinase C) kinase family protein (.1) Lus10009592 [exp] 243 / 5e-76 AT3G25250 429 / 7e-149 oxidative signal-inducible1, AGC (cAMP-dependent, cGMP-dependent and protein kinase C) kinase family protein (.1) Lus10020572 [exp] 230 / 7e-71 AT3G44610 585 / 0.0 Protein kinase superfamily protein (.1) Lus10036150 [exp] 224 / 2e-69 AT2G34650 521 / 0.0 PINOID, ABRUPTUS, Protein kinase superfamily protein (.1) Lus10006272 [exp] 225 / 3e-69 AT3G44610 591 / 0.0 Protein kinase superfamily protein (.1) Lus10043435 [exp] 217 / 4e-66 AT3G44610 466 / 2e-162 Protein kinase superfamily protein (.1) Lus10030051 [exp] 218 / 5e-66 AT2G26700 577 / 0.0 PINOID2, AGC (cAMP-dependent, cGMP-dependent and protein kinase C) kinase family protein (.1)
Poplar homologues Show only best Show top 10	Locus ID BLAST score/e-value At best hit BLAST score/e-value TAIR10 short description Potri.003G205800 [exp] 476 / 2e-167 AT3G20830 475 / 5e-167 AGC (cAMP-dependent, cGMP-dependent and protein kinase C) kinase family protein (.1) Potri.001G018300 [exp] 473 / 2e-166 AT3G20830 469 / 8e-165 AGC (cAMP-dependent, cGMP-dependent and protein kinase C) kinase family protein (.1) Potri.002G248900 [exp] 256 / 1e-81 AT3G25250 419 / 7e-145 oxidative signal-inducible1, AGC (cAMP-dependent, cGMP-dependent and protein kinase C) kinase family protein (.1) Potri.010G236200 [exp] 234 / 8e-73 AT3G44610 497 / 2e-174 Protein kinase superfamily protein (.1) Potri.008G024000 [exp] 229 / 9e-71 AT3G44610 487 / 1e-170 Protein kinase superfamily protein (.1) Potri.004G186300 [exp] 225 / 4e-66 AT2G36350 623 / 0.0 Protein kinase superfamily protein (.1) Potri.017G075400 [exp] 218 / 5e-66 AT5G40030 699 / 0.0 Protein kinase superfamily protein (.1) Potri.010G175900 [exp] 219 / 1e-65 AT1G79250 666 / 0.0 AGC kinase 1.7 (.1.2) Potri.009G146700 [exp] 223 / 3e-65 AT2G36350 621 / 0.0 Protein kinase superfamily protein (.1) Potri.008G080600 [exp] 216 / 2e-64 AT1G79250 684 / 0.0 AGC kinase 1.7 (.1.2)
PFAM info	Clan ID Clan name Pfam ID Pfam name Pfam description CL0016 [flax] [poplar] PKinase PF00069 [flax] [poplar] Pkinase Protein kinase domain
Representative CDS sequence Show only first row Show all	>Lus10031830 pacid=23180633 polypeptide=Lus10031830 locus=Lus10031830.g ID=Lus10031830.BGIv1.0 annot-version=v1.0 ATGGGCACCGTCTTCCTAGTCCACGACCGATCCACCAACAAAAGCCCTTACGCCTTGAAAGTCGTCGACAAGTCCAATTTCGTCCACAAATTCGAAGCCG AGAAGCGAGCCCGGTGGGAGATCCAGGTCCTGACCCGAATATCCGACCCGTCCAGCTCACACCCGTTCCTCCCAAAACTGATCTCCTCCGCCGAGACGCC CGAATTGCTCGCGTGGGCTGTACCTTACTGCCCCGGCGGAGATCTGAACGTCCACCGCCACCGCCAAAACGACCGCGTTTTCTCCCCTGCAGTGGTGAGG TTCTACCTAGCGGAGATCGTCTGCGCATTGGAGCGCCTCCACGAGATGGGGATCGCTTACAGAGATCTGAAGCCGGAGAACATTCTGATTCAGCAGTCCG GTCATGTGACGCTGACGGATTTCGACCTTTCCAGATTCCTCGGGAAGAAGAAATTGAAAAAACAGAGTGTCGTCGGGTTTGAATTTATATCAGTGGACGA TTTTGATGACTGCCGCGGTGTTCCGTCGAGAATTGGATGGCGCCGGGGATTCGCGCGGTGGATGCCGGCGGTGGTGCCGATCGGCGGGGAAATGCTGAAG AAGACGAAATCGGCGAGGGTGAGTCCGGTTAGCCGGAGGAAATTTCTGGTGGAGGAGGAGGAGAAGATTTCCGGCGGGGAGAGGTCGTACTCGTTTGTGG GAACGGAGGAGTACGTTTCGCCGGAGGTGGTGAGAGGCGACGGGCACGAGTTCGCCGTCGATTGGTGGGCCCTAGGGATCTTAGGCTACGAGATGACTTA CGGCACGACGCCGTTCAAGGGGAAGAACCGGAAAGAAACTTTTCGAAACGTGGTGACGAAAAAGCCGGAGTTTCTGGGTAACCGGACGAGCGAGCTGACC GATCTGATCGGACGGCTGCTAGAGAAGGATCCGACGAAGCGGCTGGGGTATCTACGGGGAGCTGCGGAGATTAAGGAGCACGCGTTCTTTCGGTGCGTGA AGTGGGAAATGCTGACGGAGGTTCTCCGGCCGCCGTTCATTCCACCATCAAAGGAGGAGACGGAGGAATCCGGAGGGATTCAGATAAGGGAGTACTTTAT GCAGCTGAGAGCACCGCCGCCGATGTCGGCTCCGGAATCGCCGTCGTCGTCGATGTCGGAGTACTGTAGGAATATTTCTCTAGCGGAATTCTAA
AA sequence Show only first row Show all	>Lus10031830 pacid=23180633 polypeptide=Lus10031830 locus=Lus10031830.g ID=Lus10031830.BGIv1.0 annot-version=v1.0 MGTVFLVHDRSTNKSPYALKVVDKSNFVHKFEAEKRARWEIQVLTRISDPSSSHPFLPKLISSAETPELLAWAVPYCPGGDLNVHRHRQNDRVFSPAVVR FYLAEIVCALERLHEMGIAYRDLKPENILIQQSGHVTLTDFDLSRFLGKKKLKKQSVVGFEFISVDDFDDCRGVPSRIGWRRGFARWMPAVVPIGGEMLK KTKSARVSPVSRRKFLVEEEEKISGGERSYSFVGTEEYVSPEVVRGDGHEFAVDWWALGILGYEMTYGTTPFKGKNRKETFRNVVTKKPEFLGNRTSELT DLIGRLLEKDPTKRLGYLRGAAEIKEHAFFRCVKWEMLTEVLRPPFIPPSKEETEESGGIQIREYFMQLRAPPPMSAPESPSSSMSEYCRNISLAEF

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DESeq2's median of ratios [FLAX]

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Coexpressed genes

Compare expression of checked genes Schematic diagram [FLAX] Schematic diagram [POPLAR]

*If you select 4 or less genes and then press "compare expression", expression will be shown as a graph. If you select more than 4 genes, expresion will be shown as a heat map.
*Color represents relative expression level among samples for each gene.

At best	At TF class	At alias	At description		Locus	MR	r	Symbol	HYP	R_s2_CTR	R_s2_Fox	R_s4_CTR	R_s4_Fox	R_r1_CTR	R_r1_Fox	R_r3_CTR	R_r3_Fox	R_r1s2_CTR	R_r1s2_Fox	R_r3s2_CTR	R_r3s2_Fox	R_s6_CTR	R_s6_Al4	R_s6_Al12	R_s6_Al24	R_s8_CTR	R_s8_Al4	R_s8_Al12	R_s8_Al24	R_r5_CTR	R_r5_Al4	R_r5_Al12	R_r5_Al24	R_r7_CTR	R_r7_Al4	R_r7_Al12	R_r7_Al24	LEAF_N	LEAF_P	LEAF_NPK	SAM	AR_Bet	AR_rdf	cPAR	TOP_Bet	TOP_rdf	iFIBa	iFIBb	MID_Bet	MID_rdf	tFIBa	tFIB_Gr	tFIB_Li	tFIB_Bi	tFIBb	tFIBb_PUL8	tFIBb_PUL24	tFIBb_PUL96	tFIBb_OPP8	tFIBb_OPP24	tFIBb_OPP96	sXYLa	sXYLb	sXYLb_PUL8	sXYLb_PUL24	sXYLb_PUL96	sXYLb_OPP8	sXYLb_OPP24	sXYLb_OPP96
AT3G20830			AGC (cAMP-dependent, cGMP-depe...		Lus10031830 [exp]	0	1
AT4G31330			Protein of unknown function, D...		Lus10020172 [exp]	1.4	0.8766
AT1G64700			unknown protein		Lus10017341 [exp]	1.7	0.8994
AT2G31160		OBO1, LSH3	ORGAN BOUNDARY 1, LIGHT SENSIT...		Lus10022918 [exp]	7.1	0.8605
AT5G58900	MYB		Homeodomain-like transcription...		Lus10018209 [exp]	12.0	0.8010
AT3G20830			AGC (cAMP-dependent, cGMP-depe...		Lus10031259 [exp]	12.6	0.8514
AT3G15210	AP2_ERF	ATERF4, RAP2.5...	RELATED TO AP2 5, ethylene res...		Lus10029987 [exp]	14.6	0.8614
AT1G24620			EF hand calcium-binding protei...		Lus10024574 [exp]	15.2	0.7410
AT3G63000		NPL41	NPL4-like protein 1 (.1)		Lus10021567 [exp]	16.6	0.8673
AT4G35040	bZIP	bZIP19	Basic-leucine zipper (bZIP) tr...		Lus10005073 [exp]	17.5	0.8371
AT4G01200			Calcium-dependent lipid-bindin...		Lus10002155 [exp]	17.9	0.8299

Compare expression of checked genes

Lus10031830 coexpression network

*The number of genes in the network is adjusted within 50 genes.
*Gene name represents symbol(s) of closest Arabidopsis gene if symbol(s) for the gene itself doesn't exist.
*Circle diameter represents the number of connection with other genes within this network.
*Color for gene name represents subnetwork based on the result of network clustering.