Plant FIBer expression Database

External link	JGI Phytozome v13 [genome browser]
Symbol
Arabidopsis homologues Show only best Show top 10	Locus ID BLAST score/e-value TF class Alias TAIR10 short description AT5G13070 314 / 4e-111 MSF1-like family protein (.1)
Paralogs Show only best Show top 10	Gene ID BLAST score/e-value At best hit BLAST score/e-value TAIR10 short description Lus10031261 [exp] 379 / 3e-134 AT5G13070 314 / 2e-108 MSF1-like family protein (.1)
Poplar homologues Show only best Show top 10	Locus ID BLAST score/e-value At best hit BLAST score/e-value TAIR10 short description Potri.001G018500 [exp] 323 / 9e-115 AT5G13070 333 / 2e-118 MSF1-like family protein (.1)
PFAM info	Clan ID Clan name Pfam ID Pfam name Pfam description CL0209 [flax] [poplar] Bet_v_1_like PF04707 [flax] [poplar] PRELI PRELI-like family
Representative CDS sequence Show only first row Show all	>Lus10031832 pacid=23180766 polypeptide=Lus10031832 locus=Lus10031832.g ID=Lus10031832.BGIv1.0 annot-version=v1.0 ATGGGGAAAGCATACACACAAGATCATATTTACAAGCATCCATGGGAGAGAGTAACATCGGCAGCCTGGCGAAAGTTTTCGGACCCCGAGAACAAAAGCA CCTTGAAGCACATACTCAACGTGGACACGCTGAGCCAGAAGCTCGATACTCAGTCCGGGAAGCTATACACGACTCGAGCCATTACCATTCACGCCCCGGG GCCGTGGTTCGTTCGCAAGATGGTCGGTCAGGAGGTGTGCAACTGCGTCGAGTCGACAGTTGTTGATGGGCGAACTCGGTCAATGCAGCTCACGACTCGA AACATCAGCCTCGAGAAGTTCATCGAAGTGGAGGAGAAGATCCAGTACGAACCGCACCCTGATAATCCGAGCGGGTGGACGTTGTGTAAACAGCAGACTA GTATTCGGATCAAACCGCTGTCTACCTTGGCGTCGATGGCCGAGAAGTTGGAGCAGAAATGTGCTGATAGGTTTATGCAGAATAGTGTTAAAGGTAGGGA GGTTATGGAGAGGATCTGCAAGTATCTCGAGTCTGAATCCAAGGGAATCCGCTTGTGA
AA sequence Show only first row Show all	>Lus10031832 pacid=23180766 polypeptide=Lus10031832 locus=Lus10031832.g ID=Lus10031832.BGIv1.0 annot-version=v1.0 MGKAYTQDHIYKHPWERVTSAAWRKFSDPENKSTLKHILNVDTLSQKLDTQSGKLYTTRAITIHAPGPWFVRKMVGQEVCNCVESTVVDGRTRSMQLTTR NISLEKFIEVEEKIQYEPHPDNPSGWTLCKQQTSIRIKPLSTLASMAEKLEQKCADRFMQNSVKGREVMERICKYLESESKGIRL

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DESeq2's median of ratios [FLAX]

Order by: Tissue Experiment Show only core collection Show again Show schematic diagram

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Coexpressed genes

Compare expression of checked genes Schematic diagram [FLAX] Schematic diagram [POPLAR]

*If you select 4 or less genes and then press "compare expression", expression will be shown as a graph. If you select more than 4 genes, expresion will be shown as a heat map.
*Color represents relative expression level among samples for each gene.

At best	At TF class	At alias	At description		Locus	MR	r	Symbol	HYP	R_s2_CTR	R_s2_Fox	R_s4_CTR	R_s4_Fox	R_r1_CTR	R_r1_Fox	R_r3_CTR	R_r3_Fox	R_r1s2_CTR	R_r1s2_Fox	R_r3s2_CTR	R_r3s2_Fox	R_s6_CTR	R_s6_Al4	R_s6_Al12	R_s6_Al24	R_s8_CTR	R_s8_Al4	R_s8_Al12	R_s8_Al24	R_r5_CTR	R_r5_Al4	R_r5_Al12	R_r5_Al24	R_r7_CTR	R_r7_Al4	R_r7_Al12	R_r7_Al24	LEAF_N	LEAF_P	LEAF_NPK	SAM	AR_Bet	AR_rdf	cPAR	TOP_Bet	TOP_rdf	iFIBa	iFIBb	MID_Bet	MID_rdf	tFIBa	tFIB_Gr	tFIB_Li	tFIB_Bi	tFIBb	tFIBb_PUL8	tFIBb_PUL24	tFIBb_PUL96	tFIBb_OPP8	tFIBb_OPP24	tFIBb_OPP96	sXYLa	sXYLb	sXYLb_PUL8	sXYLb_PUL24	sXYLb_PUL96	sXYLb_OPP8	sXYLb_OPP24	sXYLb_OPP96
AT5G13070			MSF1-like family protein (.1)		Lus10031832 [exp]	0	1
AT3G15140			Polynucleotidyl transferase, r...		Lus10005381 [exp]	4.0	0.8571
AT5G51040			unknown protein		Lus10032526 [exp]	6.2	0.8394
AT4G14880		OLD3, CYTACS1, ...	ONSET OF LEAF DEATH 3, O-acety...		Lus10015947 [exp]	7.1	0.8848
AT5G46250			RNA-binding protein (.1.2.3)		Lus10038494 [exp]	9.3	0.8667
AT2G28910		CXIP4	CAX interacting protein 4 (.1)		Lus10005458 [exp]	11.8	0.8579
AT2G28910		CXIP4	CAX interacting protein 4 (.1)		Lus10004961 [exp]	13.9	0.8410
AT2G04520			Nucleic acid-binding, OB-fold-...		Lus10014627 [exp]	19.7	0.8600
AT3G59280		TXR1	THAXTOMIN A RESISTANT 1, Prote...		Lus10032532 [exp]	20.4	0.8161
AT5G46250			RNA-binding protein (.1.2.3)		Lus10023315 [exp]	21.7	0.8607
AT4G14710		ATARD2	RmlC-like cupins superfamily p...		Lus10006617 [exp]	23.5	0.8821

Compare expression of checked genes

Lus10031832 coexpression network

*The number of genes in the network is adjusted within 50 genes.
*Gene name represents symbol(s) of closest Arabidopsis gene if symbol(s) for the gene itself doesn't exist.
*Circle diameter represents the number of connection with other genes within this network.
*Color for gene name represents subnetwork based on the result of network clustering.