Plant FIBer expression Database

External link	JGI Phytozome v13 [genome browser]
Symbol
Arabidopsis homologues Show only best Show top 10	Locus ID BLAST score/e-value TF class Alias TAIR10 short description AT3G20860 540 / 0 ATNEK5 NIMA-related kinase 5 (.1) AT3G44200 380 / 9e-123 IBO1, ATNEK6 "NIMA \(never in mitosis, gene A\)-related 6", NIMA-RELATED KINASE6, NIMA (never in mitosis, gene A)-related 6 (.1) AT3G04810 364 / 2e-120 ATNEK2 NIMA-related kinase 2 (.1.2) AT1G54510 363 / 4e-120 ATNEK1 NIMA-related serine/threonine kinase 1 (.1.2.3) AT5G28290 358 / 1e-118 ATNEK3 NIMA-related kinase 3 (.1) AT3G63280 357 / 2e-118 ATNEK4 NIMA-related kinase 4 (.1.2) AT3G12200 349 / 5e-115 ATNEK7 NIMA-related kinase 7 (.1.2) AT1G50240 142 / 3e-36 FU FUSED, Protein kinase family protein with ARM repeat domain (.2) AT1G53570 141 / 3e-36 MAPKKK3, MAP3KA MAP KINASE KINASE KINASE 3, mitogen-activated protein kinase kinase kinase 3 (.1.2.3.4.5) AT3G07980 137 / 2e-34 MAPKKK6, MAP3KE2 MAP3K EPSILON PROTEIN KINASE 2, mitogen-activated protein kinase kinase kinase 6 (.1)
Paralogs Show only best Show top 10	Gene ID BLAST score/e-value At best hit BLAST score/e-value TAIR10 short description Lus10031265 [exp] 669 / 0 AT3G20860 403 / 7e-140 NIMA-related kinase 5 (.1) Lus10040499 [exp] 431 / 2e-146 AT3G20860 476 / 2e-164 NIMA-related kinase 5 (.1) Lus10011301 [exp] 426 / 3e-140 AT3G20860 470 / 2e-157 NIMA-related kinase 5 (.1) Lus10042632 [exp] 370 / 6e-123 AT3G04810 671 / 0.0 NIMA-related kinase 2 (.1.2) Lus10020244 [exp] 367 / 7e-122 AT1G54510 694 / 0.0 NIMA-related serine/threonine kinase 1 (.1.2.3) Lus10001857 [exp] 378 / 8e-122 AT3G44200 854 / 0.0 "NIMA \(never in mitosis, gene A\)-related 6", NIMA-RELATED KINASE6, NIMA (never in mitosis, gene A)-related 6 (.1) Lus10001783 [exp] 367 / 9e-122 AT1G54510 705 / 0.0 NIMA-related serine/threonine kinase 1 (.1.2.3) Lus10013338 [exp] 377 / 1e-121 AT3G44200 845 / 0.0 "NIMA \(never in mitosis, gene A\)-related 6", NIMA-RELATED KINASE6, NIMA (never in mitosis, gene A)-related 6 (.1) Lus10015928 [exp] 339 / 1e-110 AT1G54510 694 / 0.0 NIMA-related serine/threonine kinase 1 (.1.2.3)
Poplar homologues Show only best Show top 10	Locus ID BLAST score/e-value At best hit BLAST score/e-value TAIR10 short description Potri.001G018700 [exp] 493 / 3e-171 AT3G20860 503 / 1e-175 NIMA-related kinase 5 (.1) Potri.003G205400 [exp] 478 / 1e-165 AT3G20860 486 / 5e-169 NIMA-related kinase 5 (.1) Potri.016G051900 [exp] 457 / 2e-156 AT3G20860 474 / 5e-163 NIMA-related kinase 5 (.1) Potri.006G056300 [exp] 455 / 4e-155 AT3G20860 473 / 2e-162 NIMA-related kinase 5 (.1) Potri.001G218100 [exp] 384 / 2e-124 AT3G44200 895 / 0.0 "NIMA \(never in mitosis, gene A\)-related 6", NIMA-RELATED KINASE6, NIMA (never in mitosis, gene A)-related 6 (.1) Potri.009G020100 [exp] 380 / 7e-123 AT3G44200 869 / 0.0 "NIMA \(never in mitosis, gene A\)-related 6", NIMA-RELATED KINASE6, NIMA (never in mitosis, gene A)-related 6 (.1) Potri.002G049400 [exp] 368 / 8e-122 AT3G04810 659 / 0.0 NIMA-related kinase 2 (.1.2) Potri.005G051600 [exp] 363 / 2e-119 AT3G04810 699 / 0.0 NIMA-related kinase 2 (.1.2) Potri.013G039000 [exp] 362 / 2e-119 AT1G54510 694 / 0.0 NIMA-related serine/threonine kinase 1 (.1.2.3) Potri.019G052500 [exp] 143 / 2e-36 AT1G50240 1606 / 0.0 FUSED, Protein kinase family protein with ARM repeat domain (.2)
PFAM info	Clan ID Clan name Pfam ID Pfam name Pfam description CL0016 [flax] [poplar] PKinase PF00069 [flax] [poplar] Pkinase Protein kinase domain
Representative CDS sequence Show only first row Show all	>Lus10031834 pacid=23180736 polypeptide=Lus10031834 locus=Lus10031834.g ID=Lus10031834.BGIv1.0 annot-version=v1.0 ATGGGAGGGAGAAGTAGAGGAGGAGGAGAAGACTATGAAGTGAATGAGCAGATAGGGAGGGGGAGATTCGGGGCGGCGTTTCTCGTAGTTCGTAAGTCGG AGAACAAGAGGTATGTGATGAAGAAGATCAAGCTGGCTAGACAGACGGAGAGGTTCAAGCAGACTGCTATCCAGGAGATGAACTTGATAGCCAAGTTGAA TCACCCGTATATAGTGGAGTACAAGGACTCCTGGGTTGGAAAGGAATGCGTGTGTATCGTTACGAATTACTGTGAGGGTGGCGACATGACTCAGGTGATA AGGAAAGCTAGAGGGACATATTTCAGCGAAGAGATGCTCTGTAAGTGGCTGACTCAACTTCTGCTAGCACTGGACTATCTCCATTCCAACCGGGTTCTTC ACAGAGATTTGAAATGCTCGAATATATTCCTTTCGAAAGACAACGACATCCAGCTAGGGGACTTTGGACTGGCGAAATTGCTCGGGGAAGATGACCTTGC ATCCACAGTGGTGGGAACTCCAAAATACATGTGCCCCGAGCTTCTTGCAGATATACCCTATGGCTATAAATCAGATATCTGGTCATTAGGTTGCAGCATG TTTGAAATAGCTGCACATCAACCTGCTTTCAGGGCTCCTGATATGGCTGGACTAATTCACAAGATAAACCGTGGCTCGATTTCTCCTCTTCCACCTTCTT ACTCCTCTTCATTGAAACAACTGATCAAGTTTATGCTAAGGAAGAGCCCCGAGCACCGGCCAACGGCGGCAGAGTTGTTGAGACACCCTCACTTACAGCC ATATGTTGCTCAATGTCAAAACCCGTCTCCGGTCTTTCTCCCGGTGAAGTCTGAGCATATTCCCAAGGATAAGCCCAAAGCTGTAAGACCACCATGTAAC AATAGCATCAAAGCTTTCGAGCAACAACACATTGACGATTTTTGCAAGAAAGTGTCCGATATGAAGAAAACTGCCAAACTCACCTCTGATCACATCCGAC TGAGAAACTGTGCAGAGAATATGACCCCACCTCGAAGTAACCAAATGCCAGCCAAAGCTGATCCTGCAACACAAACAACAAAAGAAATACAGGGAACTTC CAGCGACACTTCTGGAGTGACCACGCTGACTCTTGTGCAAGGAGAAGAGATCAGGGTTGAATGGGATGTTCAGAGCACTCAAAGAGCAGAAGCACTGGAA TCATTGCTGGAGATCTGTGCAGGCCTGCTCAGACGAGAAAGGTTCGACGAACTTGCTGGCGTGCTGAAACCCTTTGGCGAAGAAGCAGTATCATCAAAAG AAACAGCCATCTGGCTAACAAAAAGCCTCATGAAGATACACCATAAACGTAATGGAACAACTTGA
AA sequence Show only first row Show all	>Lus10031834 pacid=23180736 polypeptide=Lus10031834 locus=Lus10031834.g ID=Lus10031834.BGIv1.0 annot-version=v1.0 MGGRSRGGGEDYEVNEQIGRGRFGAAFLVVRKSENKRYVMKKIKLARQTERFKQTAIQEMNLIAKLNHPYIVEYKDSWVGKECVCIVTNYCEGGDMTQVI RKARGTYFSEEMLCKWLTQLLLALDYLHSNRVLHRDLKCSNIFLSKDNDIQLGDFGLAKLLGEDDLASTVVGTPKYMCPELLADIPYGYKSDIWSLGCSM FEIAAHQPAFRAPDMAGLIHKINRGSISPLPPSYSSSLKQLIKFMLRKSPEHRPTAAELLRHPHLQPYVAQCQNPSPVFLPVKSEHIPKDKPKAVRPPCN NSIKAFEQQHIDDFCKKVSDMKKTAKLTSDHIRLRNCAENMTPPRSNQMPAKADPATQTTKEIQGTSSDTSGVTTLTLVQGEEIRVEWDVQSTQRAEALE SLLEICAGLLRRERFDELAGVLKPFGEEAVSSKETAIWLTKSLMKIHHKRNGTT

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DESeq2's median of ratios [FLAX]

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Coexpressed genes

Compare expression of checked genes Schematic diagram [FLAX] Schematic diagram [POPLAR]

*If you select 4 or less genes and then press "compare expression", expression will be shown as a graph. If you select more than 4 genes, expresion will be shown as a heat map.
*Color represents relative expression level among samples for each gene.

At best	At TF class	At alias	At description		Locus	MR	r	Symbol	HYP	R_s2_CTR	R_s2_Fox	R_s4_CTR	R_s4_Fox	R_r1_CTR	R_r1_Fox	R_r3_CTR	R_r3_Fox	R_r1s2_CTR	R_r1s2_Fox	R_r3s2_CTR	R_r3s2_Fox	R_s6_CTR	R_s6_Al4	R_s6_Al12	R_s6_Al24	R_s8_CTR	R_s8_Al4	R_s8_Al12	R_s8_Al24	R_r5_CTR	R_r5_Al4	R_r5_Al12	R_r5_Al24	R_r7_CTR	R_r7_Al4	R_r7_Al12	R_r7_Al24	LEAF_N	LEAF_P	LEAF_NPK	SAM	AR_Bet	AR_rdf	cPAR	TOP_Bet	TOP_rdf	iFIBa	iFIBb	MID_Bet	MID_rdf	tFIBa	tFIB_Gr	tFIB_Li	tFIB_Bi	tFIBb	tFIBb_PUL8	tFIBb_PUL24	tFIBb_PUL96	tFIBb_OPP8	tFIBb_OPP24	tFIBb_OPP96	sXYLa	sXYLb	sXYLb_PUL8	sXYLb_PUL24	sXYLb_PUL96	sXYLb_OPP8	sXYLb_OPP24	sXYLb_OPP96
AT3G20860		ATNEK5	NIMA-related kinase 5 (.1)		Lus10031834 [exp]	0	1
AT4G17220		ATMAP70-5	microtubule-associated protein...		Lus10038790 [exp]	1.0	0.9870
					Lus10025505 [exp]	2.6	0.9633
AT2G38080		ATLMCO4, IRX12,...	LACCASE 4, IRREGULAR XYLEM 12,...		Lus10021133 [exp]	3.2	0.9572
AT3G20860		ATNEK5	NIMA-related kinase 5 (.1)		Lus10031265 [exp]	3.5	0.9693
AT5G12950			Putative glycosyl hydrolase of...		Lus10031829 [exp]	4.0	0.9409
AT1G24764		ATMAP70-2	microtubule-associated protein...		Lus10039069 [exp]	4.0	0.9632
AT2G44480		BGLU17	beta glucosidase 17 (.1.2)		Lus10039541 [exp]	4.0	0.9733
AT5G59810		ATSBT5.4	Subtilase family protein (.1)		Lus10032425 [exp]	6.9	0.9690
AT1G63440		HMA5	heavy metal atpase 5 (.1)		Lus10008309 [exp]	7.5	0.9501
AT4G18550		AtDSEL	Arabidopsis thaliana DAD1-like...		Lus10013932 [exp]	8.1	0.9653

Compare expression of checked genes

Lus10031834 coexpression network

*The number of genes in the network is adjusted within 50 genes.
*Gene name represents symbol(s) of closest Arabidopsis gene if symbol(s) for the gene itself doesn't exist.
*Circle diameter represents the number of connection with other genes within this network.
*Color for gene name represents subnetwork based on the result of network clustering.