Plant FIBer expression Database

External link	JGI Phytozome v13 [genome browser]
Symbol
Arabidopsis homologues Show only best Show top 10	Locus ID BLAST score/e-value TF class Alias TAIR10 short description AT3G51790 295 / 7e-101 ATG1 transmembrane protein G1P-related 1 (.1)
Paralogs Show only best Show top 10	Gene ID BLAST score/e-value At best hit BLAST score/e-value TAIR10 short description Lus10031267 [exp] 244 / 1e-82 AT3G51790 129 / 9e-38 transmembrane protein G1P-related 1 (.1) Lus10031266 [exp] 200 / 2e-65 AT3G51790 155 / 2e-48 transmembrane protein G1P-related 1 (.1)
Poplar homologues Show only best Show top 10	Locus ID BLAST score/e-value At best hit BLAST score/e-value TAIR10 short description Potri.003G205200 [exp] 303 / 3e-104 AT3G51790 306 / 2e-105 transmembrane protein G1P-related 1 (.1)
PFAM info	Clan ID Clan name Pfam ID Pfam name Pfam description CL0021 [flax] [poplar] OB PF03100 [flax] [poplar] CcmE CcmE
Representative CDS sequence Show only first row Show all	>Lus10031835 pacid=23180741 polypeptide=Lus10031835 locus=Lus10031835.g ID=Lus10031835.BGIv1.0 annot-version=v1.0 ATGGCATCTCGCTCTTTCCTCCTCCGTCTCAGATCTCAGTTTCTCCGCCCCTCAGTAGCCTCCACCGCAGCTGCCGGATCCTCGCCTGGAATCTTCCTCT CCACTCGCCAGCTCACTTCCGAGCGGATGATTCTCTCTCCAGTTTCAGATCTCCGCTCAGCTTACTCCGACTCGACTTCGATCTCCGGGCTACGGTTCTT CTCCACTGCGCGCCGCCATCCGTTGCGGCCGAAGGCCGTGGACATAGGAGCCCGAGCTCGTCAACTGCAGACCAGGCGGCTCTGGACGTACGCGCTCGCC TTCAGCGGCGTGGCCGGTTTCATAGTCATCGTTTTGAACAATTTCCAGGACCAGATGGTGTTCTACGTGACTCCGAGCGACGCGATTGAGCAGTACAGGG CGAATCCGAAGAAGACGAAGTTCAGATTGGGAGGGTTGGTCCTGGAAGGTAGCGTGGTGCAGCCGATGTCGTCGCCGGAGACGGAGTTCGTGGTGACGGA TTTGATCACGGATATCATGGTGAGGTTCAAAGGCGCGTTGCCTGACTTGTTCAGGGAAGGGCATTCGGTCGTGGTGGAAGGATTTGTGAGGCCGATGACT GAGGAGTTGAAGAATGAAACGGGTAGCAAGAGTGTTTCGGAGAAGGCTAGGAGTTCAGATGTTTTCTTTTCTGCTACAGAGGTTTTAGCTAAGCACGATG AGAAGTACATGCCTCAGGAGGTTGCAGCTGCCATTGAGAAGAACAAGAAGAAGCTAGAAGAAGAAGGAGAAGATGCTGGGAAAACTGAGAAGAAAGTGAC CAAATAG
AA sequence Show only first row Show all	>Lus10031835 pacid=23180741 polypeptide=Lus10031835 locus=Lus10031835.g ID=Lus10031835.BGIv1.0 annot-version=v1.0 MASRSFLLRLRSQFLRPSVASTAAAGSSPGIFLSTRQLTSERMILSPVSDLRSAYSDSTSISGLRFFSTARRHPLRPKAVDIGARARQLQTRRLWTYALA FSGVAGFIVIVLNNFQDQMVFYVTPSDAIEQYRANPKKTKFRLGGLVLEGSVVQPMSSPETEFVVTDLITDIMVRFKGALPDLFREGHSVVVEGFVRPMT EELKNETGSKSVSEKARSSDVFFSATEVLAKHDEKYMPQEVAAAIEKNKKKLEEEGEDAGKTEKKVTK

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DESeq2's median of ratios [FLAX]

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Coexpressed genes

Compare expression of checked genes Schematic diagram [FLAX] Schematic diagram [POPLAR]

*If you select 4 or less genes and then press "compare expression", expression will be shown as a graph. If you select more than 4 genes, expresion will be shown as a heat map.
*Color represents relative expression level among samples for each gene.

At best	At TF class	At alias	At description		Locus	MR	r	Symbol	HYP	R_s2_CTR	R_s2_Fox	R_s4_CTR	R_s4_Fox	R_r1_CTR	R_r1_Fox	R_r3_CTR	R_r3_Fox	R_r1s2_CTR	R_r1s2_Fox	R_r3s2_CTR	R_r3s2_Fox	R_s6_CTR	R_s6_Al4	R_s6_Al12	R_s6_Al24	R_s8_CTR	R_s8_Al4	R_s8_Al12	R_s8_Al24	R_r5_CTR	R_r5_Al4	R_r5_Al12	R_r5_Al24	R_r7_CTR	R_r7_Al4	R_r7_Al12	R_r7_Al24	LEAF_N	LEAF_P	LEAF_NPK	SAM	AR_Bet	AR_rdf	cPAR	TOP_Bet	TOP_rdf	iFIBa	iFIBb	MID_Bet	MID_rdf	tFIBa	tFIB_Gr	tFIB_Li	tFIB_Bi	tFIBb	tFIBb_PUL8	tFIBb_PUL24	tFIBb_PUL96	tFIBb_OPP8	tFIBb_OPP24	tFIBb_OPP96	sXYLa	sXYLb	sXYLb_PUL8	sXYLb_PUL24	sXYLb_PUL96	sXYLb_OPP8	sXYLb_OPP24	sXYLb_OPP96
AT3G51790		ATG1	transmembrane protein G1P-rela...		Lus10031835 [exp]	0	1
AT5G40150			Peroxidase superfamily protein...		Lus10032170 [exp]	2.0	0.8616
AT3G51790		ATG1	transmembrane protein G1P-rela...		Lus10031267 [exp]	2.4	0.8428
AT1G04980		ATPDI10, ATPDIL...	ARABIDOPSIS THALIANA PROTEIN D...		Lus10031522 [exp]	3.2	0.8561
AT1G77405			Pentatricopeptide repeat (PPR)...		Lus10042736 [exp]	4.2	0.8556
AT3G57620			glyoxal oxidase-related protei...		Lus10012386 [exp]	6.0	0.8059
AT1G14360		ATUTR3, UTR3	UDP-galactose transporter 3 (....		Lus10030495 [exp]	7.0	0.8377
AT3G51790		ATG1	transmembrane protein G1P-rela...		Lus10031266 [exp]	8.1	0.8450
AT1G27970		NTF2B	nuclear transport factor 2B (....		Lus10032033 [exp]	8.7	0.8496
AT5G19180		ECR1	E1 C-terminal related 1 (.1)		Lus10034043 [exp]	9.5	0.8361
AT2G22900			Galactosyl transferase GMA12/M...		Lus10019265 [exp]	9.5	0.8277

Compare expression of checked genes

Lus10031835 coexpression network

*The number of genes in the network is adjusted within 50 genes.
*Gene name represents symbol(s) of closest Arabidopsis gene if symbol(s) for the gene itself doesn't exist.
*Circle diameter represents the number of connection with other genes within this network.
*Color for gene name represents subnetwork based on the result of network clustering.