Plant FIBer expression Database

External link	JGI Phytozome v13 [genome browser]
Symbol
Arabidopsis homologues Show only best Show top 10	Locus ID BLAST score/e-value TF class Alias TAIR10 short description AT3G20870 335 / 6e-117 ZTP29 zinc transporter 29, ZIP metal ion transporter family (.1) AT3G08650 44 / 0.0001 ZIP metal ion transporter family (.1.2)
Paralogs Show only best Show top 10	Gene ID BLAST score/e-value At best hit BLAST score/e-value TAIR10 short description Lus10031268 [exp] 402 / 2e-143 AT3G20870 466 / 4e-168 zinc transporter 29, ZIP metal ion transporter family (.1) Lus10003243 [exp] 44 / 7e-05 AT3G08650 842 / 0.0 ZIP metal ion transporter family (.1.2) Lus10035606 [exp] 43 / 0.0001 AT3G08650 822 / 0.0 ZIP metal ion transporter family (.1.2)
Poplar homologues Show only best Show top 10	Locus ID BLAST score/e-value At best hit BLAST score/e-value TAIR10 short description Potri.001G018800 [exp] 353 / 5e-124 AT3G20870 436 / 3e-156 zinc transporter 29, ZIP metal ion transporter family (.1) Potri.003G205100 [exp] 343 / 4e-119 AT3G20870 454 / 2e-162 zinc transporter 29, ZIP metal ion transporter family (.1) Potri.006G111200 [exp] 46 / 1e-05 AT3G08650 679 / 0.0 ZIP metal ion transporter family (.1.2) Potri.016G140500 [exp] 44 / 4e-05 AT3G08650 334 / 4e-108 ZIP metal ion transporter family (.1.2)
PFAM info	Clan ID Clan name Pfam ID Pfam name Pfam description CL0184 [flax] [poplar] DMT PF02535 [flax] [poplar] Zip ZIP Zinc transporter
Representative CDS sequence Show only first row Show all	>Lus10031836 pacid=23180819 polypeptide=Lus10031836 locus=Lus10031836.g ID=Lus10031836.BGIv1.0 annot-version=v1.0 ATGGATTCTCAGGTTATCGTAGCGCTTGCTCTGTCTCTAGTTGGCGGCCTCAGCACTTCACTCGGTGCTCTGCTTGTGATAATTTCTGGGGCGCCAAGCT TGAAGATGCTTGGCCTTTTACAGGGATTTGCTTCGGGTCTAATGCTGAGCATTTCGTTCTTTGATCTCGCTCACAATGCCATTAACTCGATTGGCTTTCT CAAGGGGAATCTCTGGTTTTTCGGCGGGATTGTTTTCTTTGCTGTGATTGTGACATTCATTCCTGAACCACAACTATCTCCAGGGACGGAAGTCAAAAGC AAAAAGGAAAATGGGGATGAAGGGGGAAAGGATGTCATGAAAAAGCATCGTCGTCAGGTGTTCTACAGTGGGATCATCACTGCAGTAGGCATAAGCTTGC ACAATTTTCCGGAGGGCATGGCCGTGTTCCTCGGATCAATGAAGGGCCTTCGTGTCGGTCTTAATTTAGCCTTTGCCATTGCGCTGCATAATATCCCAGA GGGTGTTGCAGTTGCTCTTCCTGTTTATTTCGCAACACAGAGCAAGTGGGAGGCGTTCAAACTGGCAACACTGTCTGGTTTCGCAGAGCCACTTGGCGTC GTAGCTGTAGCATATCTGTTCCCAAGCAGCTTGAATCCCGAAATACTGGAGGGACTACTAGGATCAGCTGTTAAAGCTGTGTTCCTCGGAATGGCCTTCA TGTCTGCAAGCCTTTACTTTCTCCAGATCAGCTTACCTGAGGATATGAGCTTGTAG
AA sequence Show only first row Show all	>Lus10031836 pacid=23180819 polypeptide=Lus10031836 locus=Lus10031836.g ID=Lus10031836.BGIv1.0 annot-version=v1.0 MDSQVIVALALSLVGGLSTSLGALLVIISGAPSLKMLGLLQGFASGLMLSISFFDLAHNAINSIGFLKGNLWFFGGIVFFAVIVTFIPEPQLSPGTEVKS KKENGDEGGKDVMKKHRRQVFYSGIITAVGISLHNFPEGMAVFLGSMKGLRVGLNLAFAIALHNIPEGVAVALPVYFATQSKWEAFKLATLSGFAEPLGV VAVAYLFPSSLNPEILEGLLGSAVKAVFLGMAFMSASLYFLQISLPEDMSL

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DESeq2's median of ratios [FLAX]

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Coexpressed genes

Compare expression of checked genes Schematic diagram [FLAX] Schematic diagram [POPLAR]

*If you select 4 or less genes and then press "compare expression", expression will be shown as a graph. If you select more than 4 genes, expresion will be shown as a heat map.
*Color represents relative expression level among samples for each gene.

At best	At TF class	At alias	At description		Locus	MR	r	Symbol	HYP	R_s2_CTR	R_s2_Fox	R_s4_CTR	R_s4_Fox	R_r1_CTR	R_r1_Fox	R_r3_CTR	R_r3_Fox	R_r1s2_CTR	R_r1s2_Fox	R_r3s2_CTR	R_r3s2_Fox	R_s6_CTR	R_s6_Al4	R_s6_Al12	R_s6_Al24	R_s8_CTR	R_s8_Al4	R_s8_Al12	R_s8_Al24	R_r5_CTR	R_r5_Al4	R_r5_Al12	R_r5_Al24	R_r7_CTR	R_r7_Al4	R_r7_Al12	R_r7_Al24	LEAF_N	LEAF_P	LEAF_NPK	SAM	AR_Bet	AR_rdf	cPAR	TOP_Bet	TOP_rdf	iFIBa	iFIBb	MID_Bet	MID_rdf	tFIBa	tFIB_Gr	tFIB_Li	tFIB_Bi	tFIBb	tFIBb_PUL8	tFIBb_PUL24	tFIBb_PUL96	tFIBb_OPP8	tFIBb_OPP24	tFIBb_OPP96	sXYLa	sXYLb	sXYLb_PUL8	sXYLb_PUL24	sXYLb_PUL96	sXYLb_OPP8	sXYLb_OPP24	sXYLb_OPP96
AT3G20870		ZTP29	zinc transporter 29, ZIP metal...		Lus10031836 [exp]	0	1
AT3G20870		ZTP29	zinc transporter 29, ZIP metal...		Lus10031268 [exp]	3.0	0.8576
AT1G21200	Trihelix		sequence-specific DNA binding ...		Lus10018886 [exp]	4.8	0.8998
AT1G21200	Trihelix		sequence-specific DNA binding ...		Lus10028581 [exp]	6.6	0.8808
AT3G28050			nodulin MtN21 /EamA-like trans...		Lus10039425 [exp]	10.7	0.8823
AT3G45310			Cysteine proteinases superfami...		Lus10034895 [exp]	11.5	0.8858
AT1G03250			unknown protein		Lus10012370 [exp]	13.9	0.8577
AT5G55810		ATNMNAT	nicotinate/nicotinamide mononu...		Lus10023862 [exp]	21.8	0.8739
AT1G25520			Uncharacterized protein family...		Lus10034293 [exp]	22.7	0.8548
AT2G17350			unknown protein		Lus10026564 [exp]	23.6	0.8504
AT4G33000		SCABP8, ATCBL10...	SOS3-LIKE CALCIUM BINDING PROT...		Lus10037648 [exp]	25.9	0.8495

Compare expression of checked genes

Lus10031836 coexpression network

*The number of genes in the network is adjusted within 50 genes.
*Gene name represents symbol(s) of closest Arabidopsis gene if symbol(s) for the gene itself doesn't exist.
*Circle diameter represents the number of connection with other genes within this network.
*Color for gene name represents subnetwork based on the result of network clustering.