Plant FIBer expression Database

External link	JGI Phytozome v13 [genome browser]
Symbol
Arabidopsis homologues Show only best Show top 10	Locus ID BLAST score/e-value TF class Alias TAIR10 short description AT3G15200 499 / 3e-173 Tetratricopeptide repeat (TPR)-like superfamily protein (.1) AT5G15010 256 / 2e-78 Tetratricopeptide repeat (TPR)-like superfamily protein (.1) AT1G80550 214 / 8e-64 Pentatricopeptide repeat (PPR) superfamily protein (.1) AT3G62540 182 / 2e-50 Pentatricopeptide repeat (PPR) superfamily protein (.1) AT3G62470 182 / 2e-50 Pentatricopeptide repeat (PPR) superfamily protein (.1) AT5G14820 181 / 4e-50 Pentatricopeptide repeat (PPR) superfamily protein (.1) AT3G49730 171 / 5e-46 Tetratricopeptide repeat (TPR)-like superfamily protein (.1) AT1G77360 167 / 1e-45 Tetratricopeptide repeat (TPR)-like superfamily protein (.1) AT1G71060 166 / 3e-45 Tetratricopeptide repeat (TPR)-like superfamily protein (.1) AT1G20300 166 / 6e-45 Pentatricopeptide repeat (PPR) superfamily protein (.1)
Paralogs Show only best Show top 10	Gene ID BLAST score/e-value At best hit BLAST score/e-value TAIR10 short description Lus10031270 [exp] 222 / 7e-71 AT3G15200 147 / 4e-43 Tetratricopeptide repeat (TPR)-like superfamily protein (.1) Lus10021991 [exp] 231 / 2e-68 AT5G15010 617 / 0.0 Tetratricopeptide repeat (TPR)-like superfamily protein (.1) Lus10031269 [exp] 203 / 1e-63 AT3G15200 104 / 2e-27 Tetratricopeptide repeat (TPR)-like superfamily protein (.1) Lus10003461 [exp] 207 / 3e-59 AT3G62470 718 / 0.0 Pentatricopeptide repeat (PPR) superfamily protein (.1) Lus10015741 [exp] 204 / 6e-58 AT3G62470 725 / 0.0 Pentatricopeptide repeat (PPR) superfamily protein (.1) Lus10037555 [exp] 188 / 1e-53 AT1G80550 460 / 4e-160 Pentatricopeptide repeat (PPR) superfamily protein (.1) Lus10011439 [exp] 182 / 1e-51 AT1G80550 460 / 2e-160 Pentatricopeptide repeat (PPR) superfamily protein (.1) Lus10030887 [exp] 176 / 7e-49 AT1G52640 658 / 0.0 Pentatricopeptide repeat (PPR) superfamily protein (.1) Lus10001588 [exp] 174 / 4e-47 AT1G77360 679 / 0.0 Tetratricopeptide repeat (TPR)-like superfamily protein (.1)
Poplar homologues Show only best Show top 10	Locus ID BLAST score/e-value At best hit BLAST score/e-value TAIR10 short description Potri.011G115500 [exp] 574 / 0 AT3G15200 546 / 0.0 Tetratricopeptide repeat (TPR)-like superfamily protein (.1) Potri.013G053600 [exp] 246 / 3e-74 AT5G15010 659 / 0.0 Tetratricopeptide repeat (TPR)-like superfamily protein (.1) Potri.005G147200 [exp] 201 / 8e-59 AT1G80550 547 / 0.0 Pentatricopeptide repeat (PPR) superfamily protein (.1) Potri.005G181900 [exp] 189 / 6e-54 AT1G77360 723 / 0.0 Tetratricopeptide repeat (TPR)-like superfamily protein (.1) Potri.010G114700 [exp] 185 / 6e-52 AT1G71060 679 / 0.0 Tetratricopeptide repeat (TPR)-like superfamily protein (.1) Potri.014G121400 [exp] 183 / 2e-50 AT3G62470 737 / 0.0 Pentatricopeptide repeat (PPR) superfamily protein (.1) Potri.004G102700 [exp] 169 / 2e-46 AT1G52640 697 / 0.0 Pentatricopeptide repeat (PPR) superfamily protein (.1) Potri.005G245400 [exp] 165 / 1e-44 AT1G20300 768 / 0.0 Pentatricopeptide repeat (PPR) superfamily protein (.1) Potri.002G176100 [exp] 159 / 4e-42 AT3G49730 783 / 0.0 Tetratricopeptide repeat (TPR)-like superfamily protein (.1) Potri.005G066700 [exp] 156 / 2e-41 AT1G20300 213 / 5e-62 Pentatricopeptide repeat (PPR) superfamily protein (.1)
PFAM info	Clan ID Clan name Pfam ID Pfam name Pfam description CL0020 [flax] [poplar] TPR PF01535 [flax] [poplar] PPR PPR repeat
Representative CDS sequence Show only first row Show all	>Lus10031837 pacid=23180676 polypeptide=Lus10031837 locus=Lus10031837.g ID=Lus10031837.BGIv1.0 annot-version=v1.0 ATGTTTGTACGGGTGAAACTGCGGATTCTCCCAACGGTACTCTCTCAACTTAAGCCTTACTGTCATCACTTTCTATTCCGACCATGTTCCTTTCTCCGAC CATCTCCGATCTCCGGTTTCGGCGATCCAGATAGTCCGGTAGTAGGAAAGCAATCAGAATCCGATTCTCAAATGGCAGAACGTGTCCACAAAGTCCTTCA GGAGCACAGGGATGCACCAACGAAGAAACTTGAGCTCGTTCTCGCCCAATTCTTCGACTCCAAACCTACGGAAGAACTCGTCCTGGATGTCCTGAGGAGG AACCGCTTCGATTGTAAACTCGCTCTCAAGTTCTTCAACTGGATTACCAGTACTTCTCCATTATCTGCTGGCCCTACTGTTTGCAACGAAATTCTCGATA TCCTTGGCAAAATGAGGCAGTTTGAAGATGCTCACAAGGTGCTCGGCGAAATGTCCAAGAGAAAAGGATTGGTTAACGAGCAAACGTATAGAGTGCTGGT GAATCGATACGCAGCTGCGCATAAGGTTGATGAGGCAGTTGGGATGTTTAGCAAGAGGAGTGAATTCGGCTTGGAGGATCATGAAGCTGAAGCTTTTCAG AGGCTTCTGATGGCTTTGTGTAGGTATAAGCATGTTGAAGCTGCGGAAACTTTGCTGCACTCTAGGGAAGATGGTATTGTTGGTCATGACATCAAGACTC TGAATATCGTTCTCAATGGTTGGTGTGTTCTTGGAAACGTACGAGAGGCGAAGAGATTCTGGAAAGATATAGTTACGTCGAAATGCAAGCCGGATTTGTT CACCTATGGGACGTTCATCAATGCGTTGACCAAGAAGGGGAACCTCGGCTCAGCACTGAAGCTGTACGGTGCAATGCGGAAGAAGCACGAATGCAAACCG GATGTGGTGATCTGCAACTGTATTATTGATGCTCTTTGTTTCAAGAAGAGGATTCCTGAAGCATTGGAAATTTTCAGAGAAATGAATGATGATGATGGAG TATGTTGTTCTCCGAATGTGGTGACTTACAACTCGCTTATCAAACACCTGTGCAGGATTCGGAGGATGGAGAAGGTGTACGAGCTTTTGGATGAGATGGA AGAGAAAAAAGGTAGTTGCTTGCCTAATGAGGTAACTTTTAACCACTTGCTCAAGTCGTTGAAGGATCCGGTCGAAGTTCCAGGGGTTTTGGACAGGATG GAAAGGAATGGCTGTTCGATCAACCAGGATGCGTATAATTTGATGTTGAAGATGTATGTGAGTTGGGACTGTGAGGAGAAAGTGAGGGAGATGTGGTGTG AGATGGAGACCAAAGGATTGGGACCGGATCAACGGTCTTACTCGATAATGGTACACTGGTTATACGAGAAGAGGAGATTCGACGATGCTTTGCGTTACTT TCGAGAGATGAAGTCGAAGGGGATGGTTCCGGAACCGCAGACTGAAATGCTGGTCCGTTCGATGTCTACCAAGGATGCAGAGAACAAAATAATACAGAAG AAACGAGGCGATAGCCGGAACAAACTATCCGTTAAGAGAATTATAGAAAGAAAAGGGGTGCTGTAA
AA sequence Show only first row Show all	>Lus10031837 pacid=23180676 polypeptide=Lus10031837 locus=Lus10031837.g ID=Lus10031837.BGIv1.0 annot-version=v1.0 MFVRVKLRILPTVLSQLKPYCHHFLFRPCSFLRPSPISGFGDPDSPVVGKQSESDSQMAERVHKVLQEHRDAPTKKLELVLAQFFDSKPTEELVLDVLRR NRFDCKLALKFFNWITSTSPLSAGPTVCNEILDILGKMRQFEDAHKVLGEMSKRKGLVNEQTYRVLVNRYAAAHKVDEAVGMFSKRSEFGLEDHEAEAFQ RLLMALCRYKHVEAAETLLHSREDGIVGHDIKTLNIVLNGWCVLGNVREAKRFWKDIVTSKCKPDLFTYGTFINALTKKGNLGSALKLYGAMRKKHECKP DVVICNCIIDALCFKKRIPEALEIFREMNDDDGVCCSPNVVTYNSLIKHLCRIRRMEKVYELLDEMEEKKGSCLPNEVTFNHLLKSLKDPVEVPGVLDRM ERNGCSINQDAYNLMLKMYVSWDCEEKVREMWCEMETKGLGPDQRSYSIMVHWLYEKRRFDDALRYFREMKSKGMVPEPQTEMLVRSMSTKDAENKIIQK KRGDSRNKLSVKRIIERKGVL

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DESeq2's median of ratios [FLAX]

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Coexpressed genes

Compare expression of checked genes Schematic diagram [FLAX] Schematic diagram [POPLAR]

*If you select 4 or less genes and then press "compare expression", expression will be shown as a graph. If you select more than 4 genes, expresion will be shown as a heat map.
*Color represents relative expression level among samples for each gene.

At best	At TF class	At alias	At description		Locus	MR	r	Symbol	HYP	R_s2_CTR	R_s2_Fox	R_s4_CTR	R_s4_Fox	R_r1_CTR	R_r1_Fox	R_r3_CTR	R_r3_Fox	R_r1s2_CTR	R_r1s2_Fox	R_r3s2_CTR	R_r3s2_Fox	R_s6_CTR	R_s6_Al4	R_s6_Al12	R_s6_Al24	R_s8_CTR	R_s8_Al4	R_s8_Al12	R_s8_Al24	R_r5_CTR	R_r5_Al4	R_r5_Al12	R_r5_Al24	R_r7_CTR	R_r7_Al4	R_r7_Al12	R_r7_Al24	LEAF_N	LEAF_P	LEAF_NPK	SAM	AR_Bet	AR_rdf	cPAR	TOP_Bet	TOP_rdf	iFIBa	iFIBb	MID_Bet	MID_rdf	tFIBa	tFIB_Gr	tFIB_Li	tFIB_Bi	tFIBb	tFIBb_PUL8	tFIBb_PUL24	tFIBb_PUL96	tFIBb_OPP8	tFIBb_OPP24	tFIBb_OPP96	sXYLa	sXYLb	sXYLb_PUL8	sXYLb_PUL24	sXYLb_PUL96	sXYLb_OPP8	sXYLb_OPP24	sXYLb_OPP96
AT3G15200			Tetratricopeptide repeat (TPR)...		Lus10031837 [exp]	0	1
AT5G16860			Tetratricopeptide repeat (TPR)...		Lus10029888 [exp]	2.8	0.8841
AT1G11290		CRR22	CHLORORESPIRATORY REDUCTION22,...		Lus10017446 [exp]	6.3	0.8794
AT4G02750			Tetratricopeptide repeat (TPR)...		Lus10008830 [exp]	7.0	0.8467
AT5G22640		EMB1211	embryo defective 1211, MORN (M...		Lus10020545 [exp]	9.9	0.8973
AT3G04760			Pentatricopeptide repeat (PPR-...		Lus10014660 [exp]	15.0	0.8925
AT1G68890			magnesium ion binding;thiamin ...		Lus10030915 [exp]	15.2	0.8894
AT5G22640		EMB1211	embryo defective 1211, MORN (M...		Lus10009392 [exp]	15.3	0.8916
AT1G71920		HISN6B	HISTIDINE BIOSYNTHESIS 6B (.1....		Lus10005564 [exp]	18.2	0.8571
AT3G57430		OTP84	ORGANELLE TRANSCRIPT PROCESSIN...		Lus10001220 [exp]	20.6	0.8865
AT1G19720			Pentatricopeptide repeat (PPR-...		Lus10001230 [exp]	23.2	0.8841

Compare expression of checked genes

Lus10031837 coexpression network

*The number of genes in the network is adjusted within 50 genes.
*Gene name represents symbol(s) of closest Arabidopsis gene if symbol(s) for the gene itself doesn't exist.
*Circle diameter represents the number of connection with other genes within this network.
*Color for gene name represents subnetwork based on the result of network clustering.