Plant FIBer expression Database

External link	JGI Phytozome v13 [genome browser]
Symbol
Arabidopsis homologues Show only best Show top 10	Locus ID BLAST score/e-value TF class Alias TAIR10 short description AT3G57670 345 / 3e-117 C2H2ZnF WIP2, NTT WIP domain protein 2, NO TRANSMITTING TRACT, C2H2-type zinc finger family protein (.1) AT1G51220 327 / 1e-110 C2H2ZnF AtWIP5, WIP5 WIP domain protein 5 (.1) AT3G20880 324 / 2e-108 C2H2ZnF WIP4 WIP domain protein 4 (.1) AT1G13290 295 / 2e-98 C2H2ZnF WIP6, DOT5 WIP domain protein 6, DEFECTIVELY ORGANIZED TRIBUTARIES 5, C2H2-like zinc finger protein (.1) AT1G08290 285 / 3e-94 C2H2ZnF WIP3 WIP domain protein 3 (.1) AT1G34790 283 / 7e-94 C2H2ZnF WIP1, TT1 WIP domain protein 1, transparent testa 1, C2H2 and C2HC zinc fingers superfamily protein (.1) AT1G34370 103 / 7e-25 C2H2ZnF STOP1 sensitive to proton rhizotoxicity 1, C2H2 and C2HC zinc fingers superfamily protein (.1.2.3) AT5G22890 97 / 4e-22 C2H2ZnF C2H2 and C2HC zinc fingers superfamily protein (.1) AT5G03150 87 / 2e-18 C2H2ZnF JKD JACKDAW, C2H2-like zinc finger protein (.1) AT5G66730 85 / 7e-18 C2H2ZnF IDD1, ENY INDETERMINATE DOMAIN 1, ENHYDROUS, C2H2-like zinc finger protein (.1)
Paralogs Show only best Show top 10	Gene ID BLAST score/e-value At best hit BLAST score/e-value TAIR10 short description Lus10031271 [exp] 451 / 9e-159 AT3G57670 379 / 6e-131 WIP domain protein 2, NO TRANSMITTING TRACT, C2H2-type zinc finger family protein (.1) Lus10004887 [exp] 303 / 1e-100 AT1G08290 357 / 9e-123 WIP domain protein 3 (.1) Lus10021700 [exp] 300 / 6e-100 AT1G13290 333 / 2e-114 WIP domain protein 6, DEFECTIVELY ORGANIZED TRIBUTARIES 5, C2H2-like zinc finger protein (.1) Lus10035044 [exp] 299 / 6e-100 AT1G13290 338 / 1e-116 WIP domain protein 6, DEFECTIVELY ORGANIZED TRIBUTARIES 5, C2H2-like zinc finger protein (.1) Lus10020597 [exp] 298 / 2e-98 AT1G08290 335 / 7e-114 WIP domain protein 3 (.1) Lus10029525 [exp] 293 / 6e-98 AT3G57670 297 / 1e-99 WIP domain protein 2, NO TRANSMITTING TRACT, C2H2-type zinc finger family protein (.1) Lus10033454 [exp] 290 / 2e-96 AT1G34790 315 / 1e-107 WIP domain protein 1, transparent testa 1, C2H2 and C2HC zinc fingers superfamily protein (.1) Lus10020923 [exp] 290 / 3e-96 AT1G34790 312 / 2e-106 WIP domain protein 1, transparent testa 1, C2H2 and C2HC zinc fingers superfamily protein (.1) Lus10039613 [exp] 287 / 2e-95 AT3G57670 300 / 9e-101 WIP domain protein 2, NO TRANSMITTING TRACT, C2H2-type zinc finger family protein (.1)
Poplar homologues Show only best Show top 10	Locus ID BLAST score/e-value At best hit BLAST score/e-value TAIR10 short description Potri.003G205000 [exp] 353 / 6e-121 AT3G57670 377 / 2e-130 WIP domain protein 2, NO TRANSMITTING TRACT, C2H2-type zinc finger family protein (.1) Potri.001G018900 [exp] 346 / 3e-118 AT1G51220 353 / 7e-122 WIP domain protein 5 (.1) Potri.016G052700 [exp] 335 / 1e-113 AT3G57670 389 / 7e-135 WIP domain protein 2, NO TRANSMITTING TRACT, C2H2-type zinc finger family protein (.1) Potri.009G062300 [exp] 319 / 1e-107 AT3G57670 336 / 3e-114 WIP domain protein 2, NO TRANSMITTING TRACT, C2H2-type zinc finger family protein (.1) Potri.001G267900 [exp] 318 / 3e-107 AT3G57670 328 / 2e-111 WIP domain protein 2, NO TRANSMITTING TRACT, C2H2-type zinc finger family protein (.1) Potri.009G143700 [exp] 306 / 2e-102 AT1G08290 364 / 7e-126 WIP domain protein 3 (.1) Potri.004G183900 [exp] 303 / 2e-101 AT1G08290 352 / 4e-121 WIP domain protein 3 (.1) Potri.010G129000 [exp] 293 / 2e-98 AT1G13290 352 / 1e-122 WIP domain protein 6, DEFECTIVELY ORGANIZED TRIBUTARIES 5, C2H2-like zinc finger protein (.1) Potri.002G098200 [exp] 286 / 3e-95 AT1G34790 311 / 3e-106 WIP domain protein 1, transparent testa 1, C2H2 and C2HC zinc fingers superfamily protein (.1) Potri.019G085400 [exp] 103 / 3e-24 AT1G34370 478 / 1e-165 sensitive to proton rhizotoxicity 1, C2H2 and C2HC zinc fingers superfamily protein (.1.2.3)
PFAM info
Representative CDS sequence Show only first row Show all	>Lus10031838 pacid=23180754 polypeptide=Lus10031838 locus=Lus10031838.g ID=Lus10031838.BGIv1.0 annot-version=v1.0 ATGGATCCTTTTTCCAATTACTTCAACAATGGATCCTTCAATAGTAACACCACCACCACCACTAATTGGTACTACAATCTTCCTCACCACACCAATAATT ACCTCAACCATCTCCATTCTTCGTCTTCCTCGAACACCACCAATTACTTCTTCTCATCATCAAATCCTTACAACTACTACAAATCATCATCATCACCACC ATCTTCTCCCCCCATTAGAGAAGCCCTCCCACTCCTCAGCTTAAGCCCCACTAGGCCCCACCAATCCTCCATGGAAGTAGACCATCATCACCACCATCAA GAAGAACAAGAAGAAGAAGATGATGATGATGAAGAGGAAACTGTGACTGTAGCTCTGCATTTAGGGCTCCCAAGTCGTCATCATCATCATCATCAGATAG TTTCATCTTCATCTGTAGACAAAGTGGATGAAGGAAGGGCAGTTTCGTCAACTGTTGATGACCATGATGTTGTTGTTGATGATGATGATGTTGAGTGCTT GAACCTTAACCAGAATGATCATCATCAGCAGGGACATAGTAGTAATTACAGCAGCGGTGGTGTTCATCATCAGGGGATAATAAACAGGATTAACAGAGGA CAGTACTGGATCCCAACTCCAGCTCAGATCCTCATTGGCCCTACTCAGTTCTCTTGCCCTCTCTGCTTCAAGACCTTCAACCGCTACAACAACATGCAGA TGCACATGTGGGGCCATGGGTCGCAATATAGGAAGGGGCCCGAGTCCCTCCGGGGGACGCAACCGACGGCAATGCTGAGGCTACCGTGCTACTGCTGCGC CACGGGTTGTCGAAACAACATAGACCACCCGCGGGCGAAGCCGCTCAAGGACTTCAGGACGCTGCAAACACACTACAAGAGGAAGCACGGGATCAAGCCC TTCATGTGCCGAAAGTGCGGCAAGGCGTTCGCTGTCCGGGGGGACTGGCGGACCCACGAGAAGAACTGCGGGAAGCTGTGGTACTGCACGTGCGGGTCGG ACTTCAAGCACAAGAGGTCGCTCAAGGACCACATCCGGTCGTTCGGGAACGGTCACGCTGCGTACGGGATCGACTCGTTCGAGGAGGAGGACGATGGAGG GTCGGATGTCGAGCAGCAGCAGCAGCCAATGCAGGATCATTGA
AA sequence Show only first row Show all	>Lus10031838 pacid=23180754 polypeptide=Lus10031838 locus=Lus10031838.g ID=Lus10031838.BGIv1.0 annot-version=v1.0 MDPFSNYFNNGSFNSNTTTTTNWYYNLPHHTNNYLNHLHSSSSSNTTNYFFSSSNPYNYYKSSSSPPSSPPIREALPLLSLSPTRPHQSSMEVDHHHHHQ EEQEEEDDDDEEETVTVALHLGLPSRHHHHHQIVSSSSVDKVDEGRAVSSTVDDHDVVVDDDDVECLNLNQNDHHQQGHSSNYSSGGVHHQGIINRINRG QYWIPTPAQILIGPTQFSCPLCFKTFNRYNNMQMHMWGHGSQYRKGPESLRGTQPTAMLRLPCYCCATGCRNNIDHPRAKPLKDFRTLQTHYKRKHGIKP FMCRKCGKAFAVRGDWRTHEKNCGKLWYCTCGSDFKHKRSLKDHIRSFGNGHAAYGIDSFEEEDDGGSDVEQQQQPMQDH

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DESeq2's median of ratios [FLAX]

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Coexpressed genes

Compare expression of checked genes Schematic diagram [FLAX] Schematic diagram [POPLAR]

*If you select 4 or less genes and then press "compare expression", expression will be shown as a graph. If you select more than 4 genes, expresion will be shown as a heat map.
*Color represents relative expression level among samples for each gene.

At best	At TF class	At alias	At description		Locus	MR	r	Symbol	HYP	R_s2_CTR	R_s2_Fox	R_s4_CTR	R_s4_Fox	R_r1_CTR	R_r1_Fox	R_r3_CTR	R_r3_Fox	R_r1s2_CTR	R_r1s2_Fox	R_r3s2_CTR	R_r3s2_Fox	R_s6_CTR	R_s6_Al4	R_s6_Al12	R_s6_Al24	R_s8_CTR	R_s8_Al4	R_s8_Al12	R_s8_Al24	R_r5_CTR	R_r5_Al4	R_r5_Al12	R_r5_Al24	R_r7_CTR	R_r7_Al4	R_r7_Al12	R_r7_Al24	LEAF_N	LEAF_P	LEAF_NPK	SAM	AR_Bet	AR_rdf	cPAR	TOP_Bet	TOP_rdf	iFIBa	iFIBb	MID_Bet	MID_rdf	tFIBa	tFIB_Gr	tFIB_Li	tFIB_Bi	tFIBb	tFIBb_PUL8	tFIBb_PUL24	tFIBb_PUL96	tFIBb_OPP8	tFIBb_OPP24	tFIBb_OPP96	sXYLa	sXYLb	sXYLb_PUL8	sXYLb_PUL24	sXYLb_PUL96	sXYLb_OPP8	sXYLb_OPP24	sXYLb_OPP96
AT3G57670	C2H2ZnF	WIP2, NTT	WIP domain protein 2, NO TRANS...		Lus10031838 [exp]	0	1
AT1G69830		ATAMY3, AMY3	alpha-amylase-like 3 (.1)		Lus10030793 [exp]	4.0	0.8975
AT1G02170		AtMCP1b, ATMC1,...	LSD ONE LIKE 3, ARABIDOPSIS TH...		Lus10010766 [exp]	4.2	0.9095
					Lus10018997 [exp]	6.3	0.9087
AT4G26640	WRKY	ATWRKY20, WRKY2...	WRKY family transcription fact...		Lus10043167 [exp]	6.6	0.9057
					Lus10033847 [exp]	9.6	0.9087
AT1G74150			Galactose oxidase/kelch repeat...		Lus10031420 [exp]	9.7	0.8756
AT1G74720		QKY	QUIRKY, C2 calcium/lipid-bindi...		Lus10033097 [exp]	12.6	0.8748
AT3G16330			unknown protein		Lus10038274 [exp]	12.7	0.9042
AT5G37660		PDLP7	plasmodesmata-located protein ...		Lus10020814 [exp]	13.0	0.9015
AT3G18990	B3	REM39, VRN1	REDUCED VERNALIZATION RESPONSE...		Lus10008529 [exp]	14.4	0.8690

Compare expression of checked genes

Lus10031838 coexpression network

*The number of genes in the network is adjusted within 50 genes.
*Gene name represents symbol(s) of closest Arabidopsis gene if symbol(s) for the gene itself doesn't exist.
*Circle diameter represents the number of connection with other genes within this network.
*Color for gene name represents subnetwork based on the result of network clustering.