Plant FIBer expression Database

External link	JGI Phytozome v13 [genome browser]
Symbol
Arabidopsis homologues Show only best Show top 10	Locus ID BLAST score/e-value TF class Alias TAIR10 short description AT5G19620 906 / 0 TOC75-V, EMB213, TOC75, ATOEP80, OEP80 translocon at the outer envelope membrane of chloroplasts 75-V, EMBRYO DEFECTIVE 213, ARABIDOPSIS THALIANA OUTER ENVELOPE PROTEIN OF 80 KDA, outer envelope protein of 80 kDa (.1) AT3G44160 224 / 1e-66 Outer membrane OMP85 family protein (.1) AT3G48620 145 / 2e-38 Outer membrane OMP85 family protein (.1) AT3G46740 73 / 5e-13 MAR1, TOC75-III, TOC75 MODIFIER OF ARG1 1, translocon at the outer envelope membrane of chloroplasts 75-III (.1) AT4G09080 57 / 2e-08 TOC75-IV, ATTOC75-IV translocon at the outer envelope membrane of chloroplasts 75-IV, TRANSLOCON OUTER MEMBRANE COMPLEX 75-IV, Outer membrane OMP85 family protein (.1)
Paralogs Show only best Show top 10	Gene ID BLAST score/e-value At best hit BLAST score/e-value TAIR10 short description Lus10031272 [exp] 1248 / 0 AT5G19620 1018 / 0.0 translocon at the outer envelope membrane of chloroplasts 75-V, EMBRYO DEFECTIVE 213, ARABIDOPSIS THALIANA OUTER ENVELOPE PROTEIN OF 80 KDA, outer envelope protein of 80 kDa (.1) Lus10004104 [exp] 161 / 2e-43 AT3G44160 566 / 0.0 Outer membrane OMP85 family protein (.1) Lus10013360 [exp] 164 / 4e-42 AT3G44160 574 / 0.0 Outer membrane OMP85 family protein (.1) Lus10016508 [exp] 79 / 6e-15 AT3G46740 1179 / 0.0 MODIFIER OF ARG1 1, translocon at the outer envelope membrane of chloroplasts 75-III (.1) Lus10004978 [exp] 70 / 4e-12 AT3G46740 1117 / 0.0 MODIFIER OF ARG1 1, translocon at the outer envelope membrane of chloroplasts 75-III (.1) Lus10001566 [exp] 70 / 6e-12 AT3G46740 1210 / 0.0 MODIFIER OF ARG1 1, translocon at the outer envelope membrane of chloroplasts 75-III (.1)
Poplar homologues Show only best Show top 10	Locus ID BLAST score/e-value At best hit BLAST score/e-value TAIR10 short description Potri.001G019000 [exp] 961 / 0 AT5G19620 936 / 0.0 translocon at the outer envelope membrane of chloroplasts 75-V, EMBRYO DEFECTIVE 213, ARABIDOPSIS THALIANA OUTER ENVELOPE PROTEIN OF 80 KDA, outer envelope protein of 80 kDa (.1) Potri.003G204900 [exp] 938 / 0 AT5G19620 892 / 0.0 translocon at the outer envelope membrane of chloroplasts 75-V, EMBRYO DEFECTIVE 213, ARABIDOPSIS THALIANA OUTER ENVELOPE PROTEIN OF 80 KDA, outer envelope protein of 80 kDa (.1) Potri.009G017100 [exp] 215 / 2e-63 AT3G44160 598 / 0.0 Outer membrane OMP85 family protein (.1) Potri.001G215500 [exp] 208 / 1e-60 AT3G44160 581 / 0.0 Outer membrane OMP85 family protein (.1) Potri.001G072800 [exp] 69 / 1e-11 AT3G46740 1289 / 0.0 MODIFIER OF ARG1 1, translocon at the outer envelope membrane of chloroplasts 75-III (.1) Potri.003G158100 [exp] 67 / 3e-11 AT3G46740 1274 / 0.0 MODIFIER OF ARG1 1, translocon at the outer envelope membrane of chloroplasts 75-III (.1)
PFAM info	Clan ID Clan name Pfam ID Pfam name Pfam description CL0191 [flax] [poplar] POTRA PF07244 [flax] [poplar] POTRA Surface antigen variable number repeat CL0193 [flax] [poplar] MBB PF01103 [flax] [poplar] Omp85 Omp85 superfamily domain
Representative CDS sequence Show only first row Show all	>Lus10031839 pacid=23180703 polypeptide=Lus10031839 locus=Lus10031839.g ID=Lus10031839.BGIv1.0 annot-version=v1.0 ATGCCGCCGCGCGACGAAGGCGTTCGCTTTACTTCATCCTCCGTCAAAATCCCTCCTTTCTCCGACCAGCTTCACTTCCACCGCTCTCCTCCGCCGCCGC CACTCCTTTCTCAGAACTTCCTATCTCAACTCGTCAGAACGAAATCCTCCTTATCCAGTTTCGTTGACTCCCTGATTACTCGCACCCTCGGCTCGATTCA GCAGCATTCCGAAGCTCAAGGGCTTTACTCGCCAGCTGGAAGCTCGCCGCTTCTCTGTTCGGCGTCTCTTTCCCATAATCGGCCGGGAAACGAAGCTAAA ACATCGTCTCCGCTGCCGATTCTATGTTCAGCGTCATTGGCCCTGAGTCAAGCTGCTGACTTGGAGACGTCGGTGACTCAGCAGCAGAAGGGCGGATCAT TGTCTGTGAGCCGGAATAACGAGGAAGAGAGAGTGTTGATAAGTGAGGTTTTGGTGATGAATAAGGACGGCGAGGAGCTTGAAATGAAGGACCTTGAAGC AGAGGCAATGGCGGCGTTGAAGGCCTGCCGTCCCAATTCAGCTCTCACTGTGAAGGAAGTTCAAGAGGATGTTCACAGGATCATCAACAGTGGCTACTTC TCCTCTTGCATGCCTGTGGCTGTAGACACCAGAGATGGGATCCGATTAGTTTTTCAGGTAGAACCAAACCAAGAATTCAACGGGATTGTGTGCGACGGGG CCAACGTTCTGCCCGCAAAGTTTGTAGAGGATGCTTTCCGTCACGAGTATGGGAAAGTTGTGAATATTAGGCGTTTGGATGATGCAATCACCGCTGTCAA TGGATGGAACATGGAGCGTGGCCTTTTTGGTTTGGTTTCAGGGGTTGAGATCCTTTCTGGGGGTATCATACGGTTGCAGGTGGCAGAAGCTGAAGTGAAT GACATATCCATACGTTTTCTAGACCGGAAGACTGGCGAACCGACTAAAGGGAAGACAAAGCCTGAAACGATACTTAGGCAACTAACAACCAAGAAGGGCC AGGTGTACAGTATGCTTCAAGGGAAAAGAGATGTGGATACTGTGTTAACTATGGGAATCATGGAAGATGTTAGCATCATCCCCCAACCTGCAGGAGATAC TGGCAAAGTTGATTTGATCATGAATGTTGTTGAACGTCCGAGTGGAGGTTTTTCTGCTGGTGGAGGAATATCCAGTGGGATTACAAGCGGCCCTTTATCT GGACTCATTGGGAGCTTTGCCTATTCTCATCGGAATGTTTTCGGAAGAAACCAGAAACTTAATGTCTCCCTAGAGAGGGGGCAAGTAGACTCCATATTCC GTATGAATTACACAGATCCATGGATTCAGGGAGATGATAAGAGGACGTCTAGAACAATTATGGTTCAGAATTCAAGAACTCCTGGGAATCTTGTTCATGG TAACCAGTCTGGTGCTAGTAGTCTGACAATTGGTCGCGTGACTGCTGGTTTGGAATTTGGTCGACCACTCAGGCCAAAGTGGAGTGGAACTGCAGGACTT CTTTTCCAGCATGCGGGTGCTCGTGATGAAAATGGAAATCCTATCATTAAGGACTGTTACGGTAGCCCTCTTACTGCAAGTGGCAAGACATATGACGATA TGTTACTGGCAAAGCTTGAGACTGTCTACACCGGTTCGGCTGATCATGGGTCATCGATGTTTGTATTTAACATGGAACAAGGACTACCAGTGTGGCCCGA CTGGCTGTTCTTCAACAGAGTAAATGCTCGAGCCAGGAAGGGAGTGCAAGTTGGCCCTGCTCTCTTTCTCCTCAGCGTATCTGGGGGACACGTCATGGGC AAGTTCTCTCCTCACGAAGCATTCGCAATAGGAGGAACGAACAGCGTCAGAGGATACGAAGAAGGTGCGGTAGCCTCAGGTCGATCCTACGTAGTCGGTT CTGGCGAACTTTCTTTCCCATTGTTGGGGCCGGTGGAAGGAGTCATATTTGGTGACTACGGCACTGATCTGGGCTCTGGACCAACCGTACCAGGTGACCC AGCCGGAGCCCGGTTAAAGCTCGGGAGCGGATACGGAGGCGGGCTCGGGGTCCGAGTCGAGTCGCCGTTAGGACCCTTAAGGCTCGAGTACGCCTACAAC GATCGGCGCGAGAAAAGGTTTCACTTTGGTGTCGGATACCGAAACTGA
AA sequence Show only first row Show all	>Lus10031839 pacid=23180703 polypeptide=Lus10031839 locus=Lus10031839.g ID=Lus10031839.BGIv1.0 annot-version=v1.0 MPPRDEGVRFTSSSVKIPPFSDQLHFHRSPPPPPLLSQNFLSQLVRTKSSLSSFVDSLITRTLGSIQQHSEAQGLYSPAGSSPLLCSASLSHNRPGNEAK TSSPLPILCSASLALSQAADLETSVTQQQKGGSLSVSRNNEEERVLISEVLVMNKDGEELEMKDLEAEAMAALKACRPNSALTVKEVQEDVHRIINSGYF SSCMPVAVDTRDGIRLVFQVEPNQEFNGIVCDGANVLPAKFVEDAFRHEYGKVVNIRRLDDAITAVNGWNMERGLFGLVSGVEILSGGIIRLQVAEAEVN DISIRFLDRKTGEPTKGKTKPETILRQLTTKKGQVYSMLQGKRDVDTVLTMGIMEDVSIIPQPAGDTGKVDLIMNVVERPSGGFSAGGGISSGITSGPLS GLIGSFAYSHRNVFGRNQKLNVSLERGQVDSIFRMNYTDPWIQGDDKRTSRTIMVQNSRTPGNLVHGNQSGASSLTIGRVTAGLEFGRPLRPKWSGTAGL LFQHAGARDENGNPIIKDCYGSPLTASGKTYDDMLLAKLETVYTGSADHGSSMFVFNMEQGLPVWPDWLFFNRVNARARKGVQVGPALFLLSVSGGHVMG KFSPHEAFAIGGTNSVRGYEEGAVASGRSYVVGSGELSFPLLGPVEGVIFGDYGTDLGSGPTVPGDPAGARLKLGSGYGGGLGVRVESPLGPLRLEYAYN DRREKRFHFGVGYRN

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DESeq2's median of ratios [FLAX]

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Coexpressed genes

Compare expression of checked genes Schematic diagram [FLAX] Schematic diagram [POPLAR]

*If you select 4 or less genes and then press "compare expression", expression will be shown as a graph. If you select more than 4 genes, expresion will be shown as a heat map.
*Color represents relative expression level among samples for each gene.

At best	At TF class	At alias	At description		Locus	MR	r	Symbol	HYP	R_s2_CTR	R_s2_Fox	R_s4_CTR	R_s4_Fox	R_r1_CTR	R_r1_Fox	R_r3_CTR	R_r3_Fox	R_r1s2_CTR	R_r1s2_Fox	R_r3s2_CTR	R_r3s2_Fox	R_s6_CTR	R_s6_Al4	R_s6_Al12	R_s6_Al24	R_s8_CTR	R_s8_Al4	R_s8_Al12	R_s8_Al24	R_r5_CTR	R_r5_Al4	R_r5_Al12	R_r5_Al24	R_r7_CTR	R_r7_Al4	R_r7_Al12	R_r7_Al24	LEAF_N	LEAF_P	LEAF_NPK	SAM	AR_Bet	AR_rdf	cPAR	TOP_Bet	TOP_rdf	iFIBa	iFIBb	MID_Bet	MID_rdf	tFIBa	tFIB_Gr	tFIB_Li	tFIB_Bi	tFIBb	tFIBb_PUL8	tFIBb_PUL24	tFIBb_PUL96	tFIBb_OPP8	tFIBb_OPP24	tFIBb_OPP96	sXYLa	sXYLb	sXYLb_PUL8	sXYLb_PUL24	sXYLb_PUL96	sXYLb_OPP8	sXYLb_OPP24	sXYLb_OPP96
AT5G19620		TOC75-V, EMB213...	translocon at the outer envelo...		Lus10031839 [exp]	0	1
AT5G64420			DNA polymerase V family (.1)		Lus10041274 [exp]	7.5	0.9075
AT5G26830			Threonyl-tRNA synthetase (.1)		Lus10005351 [exp]	10.0	0.8875
AT1G48650			DEA(D/H)-box RNA helicase fami...		Lus10009012 [exp]	13.7	0.8801
AT3G12270		ATPRMT3	ARABIDOPSIS THALIANA PROTEIN A...		Lus10026158 [exp]	16.4	0.8768
AT5G09840			Putative endonuclease or glyco...		Lus10020866 [exp]	19.7	0.8853
AT1G71920		HISN6B	HISTIDINE BIOSYNTHESIS 6B (.1....		Lus10013699 [exp]	20.3	0.8465
AT4G39460		SAMC1, SAMT1	SAM TRANSPORTER1, S-adenosylme...		Lus10006812 [exp]	20.8	0.8612
AT2G41620			Nucleoporin interacting compon...		Lus10029548 [exp]	23.5	0.8775
AT1G64310			Tetratricopeptide repeat (TPR)...		Lus10028074 [exp]	26.7	0.8348
AT3G09040			Pentatricopeptide repeat (PPR)...		Lus10024199 [exp]	27.9	0.8757

Compare expression of checked genes

Lus10031839 coexpression network

*The number of genes in the network is adjusted within 50 genes.
*Gene name represents symbol(s) of closest Arabidopsis gene if symbol(s) for the gene itself doesn't exist.
*Circle diameter represents the number of connection with other genes within this network.
*Color for gene name represents subnetwork based on the result of network clustering.