Plant FIBer expression Database

External link	JGI Phytozome v13 [genome browser]
Symbol
Arabidopsis homologues Show only best Show top 10	Locus ID BLAST score/e-value TF class Alias TAIR10 short description AT1G63440 548 / 0 HMA5 heavy metal atpase 5 (.1) AT5G44790 468 / 4e-150 HMA7, RAN1 copper-exporting ATPase / responsive-to-antagonist 1 / copper-transporting ATPase (RAN1) (.1) AT5G21930 275 / 4e-79 ATHMA8, HMA8, PAA2 ARABIDOPSIS HEAVY METAL ATPASE 8, P-type ATPase of Arabidopsis 2 (.1.2.3) AT4G33520 258 / 9e-73 AtHMAC6, HMA6, PAA1 Arabidopsis thaliana heavy metal ATPase 6, P-type ATP-ase 1 (.1.2.3) AT4G30110 189 / 2e-49 ATHMA2, HMA2 ARABIDOPSIS HEAVY METAL ATPASE 2, heavy metal atpase 2 (.1) AT2G19110 186 / 3e-48 ATHMA4, HMA4 ARABIDOPSIS HEAVY METAL ATPASE 4, heavy metal atpase 4 (.1) AT4G30120 105 / 2e-23 ATHMA3, HMA3 A. THALIANA HEAVY METAL ATPASE 3, heavy metal atpase 3 (.1) AT4G37270 105 / 7e-23 ATHMA1, HMA1 ARABIDOPSIS THALIANA HEAVY METAL ATPASE 1, heavy metal atpase 1 (.1) AT3G57330 90 / 4e-18 ACA11 autoinhibited Ca2+-ATPase 11, autoinhibited Ca2+-ATPase 11 (.1) AT2G41560 88 / 2e-17 ACA4 "autoinhibited Ca\(2+\)-ATPase, isoform 4", autoinhibited Ca(2+)-ATPase, isoform 4 (.1)
Paralogs Show only best Show top 10	Gene ID BLAST score/e-value At best hit BLAST score/e-value TAIR10 short description Lus10031273 [exp] 887 / 0 AT1G63440 1040 / 0.0 heavy metal atpase 5 (.1) Lus10008309 [exp] 519 / 1e-169 AT1G63440 1491 / 0.0 heavy metal atpase 5 (.1) Lus10038364 [exp] 465 / 4e-149 AT5G44790 1441 / 0.0 copper-exporting ATPase / responsive-to-antagonist 1 / copper-transporting ATPase (RAN1) (.1) Lus10036225 [exp] 447 / 5e-142 AT5G44790 1402 / 0.0 copper-exporting ATPase / responsive-to-antagonist 1 / copper-transporting ATPase (RAN1) (.1) Lus10023777 [exp] 257 / 2e-72 AT4G33520 1180 / 0.0 Arabidopsis thaliana heavy metal ATPase 6, P-type ATP-ase 1 (.1.2.3) Lus10038070 [exp] 202 / 8e-54 AT5G21930 1146 / 0.0 ARABIDOPSIS HEAVY METAL ATPASE 8, P-type ATPase of Arabidopsis 2 (.1.2.3) Lus10006955 [exp] 191 / 6e-50 AT2G19110 1072 / 0.0 ARABIDOPSIS HEAVY METAL ATPASE 4, heavy metal atpase 4 (.1) Lus10025467 [exp] 188 / 5e-49 AT4G30110 1073 / 0.0 ARABIDOPSIS HEAVY METAL ATPASE 2, heavy metal atpase 2 (.1) Lus10009789 [exp] 177 / 1e-47 AT5G21930 447 / 1e-149 ARABIDOPSIS HEAVY METAL ATPASE 8, P-type ATPase of Arabidopsis 2 (.1.2.3)
Poplar homologues Show only best Show top 10	Locus ID BLAST score/e-value At best hit BLAST score/e-value TAIR10 short description Potri.001G019100 [exp] 740 / 0 AT1G63440 1043 / 0.0 heavy metal atpase 5 (.1) Potri.003G125600 [exp] 546 / 3e-180 AT1G63440 1527 / 0.0 heavy metal atpase 5 (.1) Potri.001G105800 [exp] 538 / 6e-177 AT1G63440 1538 / 0.0 heavy metal atpase 5 (.1) Potri.003G125700 [exp] 516 / 1e-168 AT1G63440 1395 / 0.0 heavy metal atpase 5 (.1) Potri.003G075700 [exp] 466 / 4e-149 AT5G44790 1526 / 0.0 copper-exporting ATPase / responsive-to-antagonist 1 / copper-transporting ATPase (RAN1) (.1) Potri.001G158900 [exp] 459 / 2e-146 AT5G44790 1465 / 0.0 copper-exporting ATPase / responsive-to-antagonist 1 / copper-transporting ATPase (RAN1) (.1) Potri.018G047800 [exp] 291 / 2e-84 AT5G21930 1193 / 0.0 ARABIDOPSIS HEAVY METAL ATPASE 8, P-type ATPase of Arabidopsis 2 (.1.2.3) Potri.003G204801 [exp] 254 / 2e-79 AT1G63440 234 / 3e-72 heavy metal atpase 5 (.1) Potri.003G024000 [exp] 268 / 3e-76 AT4G33520 1078 / 0.0 Arabidopsis thaliana heavy metal ATPase 6, P-type ATP-ase 1 (.1.2.3) Potri.001G205400 [exp] 261 / 6e-74 AT4G33520 1066 / 0.0 Arabidopsis thaliana heavy metal ATPase 6, P-type ATP-ase 1 (.1.2.3)
PFAM info	Clan ID Clan name Pfam ID Pfam name Pfam description CL0137 [flax] [poplar] HAD PF00702 [flax] [poplar] Hydrolase haloacid dehalogenase-like hydrolase CL0137 [flax] [poplar] PF00122 [flax] [poplar] E1-E2_ATPase E1-E2 ATPase CL0137 [flax] [poplar] PF00403 [flax] [poplar] HMA Heavy-metal-associated domain
Representative CDS sequence Show only first row Show all	>Lus10031840 pacid=23180657 polypeptide=Lus10031840 locus=Lus10031840.g ID=Lus10031840.BGIv1.0 annot-version=v1.0 ATGAGCTCGACTCGTAAGAATGGTGATGCGGAACGCAATGGGAGGGGTGATGGTGATCACCTCAAGGTACCTCTACTGGAGCAGCCTTCTTCTGGTGGAC TTGCAACTGCGGATAAGAAGGTTCGAACTGCAAAATTCAAGATAGGGGACATCAAATGCACGTCTTGTACTGCATCTATAGAGTCTGTGTTGAAAGAGGT TGCTGGAGTAGTGAATGTAGCGATATCCGTTCTTGATGGCCATTCTGCTGTCACTTACATGCCTGAGCTCACCACGGTTGATCAAATTAAGGAAACCATT GAAGATGCTGGGTTCCCGGTGGAGCATTTACCTGAGCAAGATGTTGCGGTGTGCCGGCTCAAGATAAAAGGAATGATGTGTACAAGCTGCTCCGAATCAG TTGAACGTGCGCTTCTGATGGTTGATGGGGTTAAGAAGGCGGTGGTGGGTCTTGCTCTGGAAGAAGCAAAAGTCCATTTCGATCCGAATGTTGTAGACAT TAGTGGAATCATTGAGTTTGTGGAAGATTCCGGGTTTGGAGCTGAGCTTGTCAGTTCTGGCACTGATGTAAACAAAGTGCATCTGAAACTCGAGGGAGTT GATTCCTTGGAGGATAGTGAGCGGATTCGTTCCTTGCTCGAGTCGGCAAATGGTGTGAATCAAGTGGAGATGGACCTGGTTGATCATAAGGTGACTATTA ACTACGATTCAGCCATTACTGGTCCAAGATCTCTTATACAGTTCCTTGAGATGGCTTCCCCTAGTCCTGGCATGTTTCGAGCAGCGTTATACATTCCGCC AAAGCAAAGGGAAACTGATCGGCTTCAAGAAACTCTGTCGTACAGAAACCAATTCTTATGGAGCTGCATTTTCTTGGTCCCTATATTTCTATTTTCCATG GGACTCCCAATGCTTCATCCTTATGGAAACTGGCTGAACTTTAAGATTTATCGCGCATTCAATGTTGGCATGCTCCTTCGGTGGATACTATGCACGCCCG TGCAGTTTATTATCGGCAAAAGGTTTTATGTGGGAGCATACCATGCATTGAGACGGAAATCTGCCAATATGGATGTTTTGGTTGCATTAGGAACTAATGT TGCATACGTCTACTCTGTGTATGTAGTCATAAAAGCAATGATGTCCTACAATTTTGAAGGCCAAGATTTTTTCGAAACTAGTACAATGTTGATATCTTTC ATACTTTTGGGGAAGTATCTGGAGGTTGTGGCTAAAGGAAAGACTTCAGATGCTTTAGCAAAACTGACTGAACTTTCTCCTGAAACAGCCTGTCTGCTAA CTATAGACAAGGCTGCACTTTCCCAAATTGTTCAACTTGTAGAGGCAGCTCAATTGGCTAGAGCCCCTGTTCAGCAACTAGCAGACAGGATCTCTAGATA TTTCGTTCCTACGGTTGTTGCTGCTGCTTTTATAACATGGCTGGTATGGTTTATAGCTGGACAAGCAGACTTGTATCCCAAGCGTTTGATACCAAAAGCC ATGGATAAGTTCGAGCTCGCTTTGCAATTTGGTATCTCGGTGCTGGTGATTGCCTGTCCTTGTGCTTTGGGACTAGCTACACCGACGGCAGTTATGGTTG CGACTGGAAAAGGTGCTTCCCAAGGTGTGCTTATCAAGGGCGGAGATTCTCTCGAAAAGGCACATACGGTGAAGACTGTGGTCTTTGATAAGACCGGGAC TTTGACCGCCGGGAAACCACAAGTAGTTAGTGCTGTGCTCTTCTCAAGTTTCTCGATGGAGGAATTCTGTGACATGGCAACTGCTGCAGAGGCGAACAGC GAACACCCGATAGCGAAATCTGTGGTGGCATATACTAAGAGATTCCGCCACAAGATTGGGTCTATCCCAGATCAGGTTCCGGAGGTGAAAGACTTCGAGG TACACACTGGAGCTGGAGTGAGTGGGAAAGTTGGCGACAGATTCGTTATTGTAGGGAACAGAAAGCTTATGCGGACGTATGAGGTCACTCTCCAGCCGGA GGTGGAGAAATTCATCCTCGAAAACGAAGAGTTGGCTCGAACATGTGTCCTGGTCGCCATTGATGGCAAGATAGCCGGAGCATTTGCGGTGACTGATCCG GTCAAACCTGAAGCTCAGCGTGTGATCTCATACCTTCGTTCCATGGGGATCACGAGCATCATGGTGACCGGCGATAACACTGCGACCGCAGCAGCCATTG CCAGAGATGTCGGAATCGATTACTTCTTCGCAGAGACGGATCCCCTCGGAAAAGCTGACAAGATCAAGGACCTTCAGGGGAAAGGGACCAAGGTGGCAAT GGTGGGAGACGGGATCAACGACTCACCGGCATTGGTGGCAGCCGACGTAGGGATGGCCATTGGTGCCGGCACCAACGTGGCCATAGAAGCAGCCGATATA GTGCTGATGAAAAGCAATCTCGAAGACGTGGTCACGGCCATAGATCTGTCCAGGAAGACCATCGCTAGAATCCGGCTTAACTATGTGTGGGCGCTTGGTT ACAACGTACTCGGCATGCCAATTGCTGCGGGAATCCTGTACCCGTTCACCGGAATCCGGCTGCCACCTTGGCTCGCAGGTGGCTGCATGGCTGCGTCGTC GCTAAGCGTGGTGTGTTCTTCACTGTTGTTGCAGTCGTACAAGAAGCCATTGCGTGTAAGAGACAATTGGGATTGTACTTAG
AA sequence Show only first row Show all	>Lus10031840 pacid=23180657 polypeptide=Lus10031840 locus=Lus10031840.g ID=Lus10031840.BGIv1.0 annot-version=v1.0 MSSTRKNGDAERNGRGDGDHLKVPLLEQPSSGGLATADKKVRTAKFKIGDIKCTSCTASIESVLKEVAGVVNVAISVLDGHSAVTYMPELTTVDQIKETI EDAGFPVEHLPEQDVAVCRLKIKGMMCTSCSESVERALLMVDGVKKAVVGLALEEAKVHFDPNVVDISGIIEFVEDSGFGAELVSSGTDVNKVHLKLEGV DSLEDSERIRSLLESANGVNQVEMDLVDHKVTINYDSAITGPRSLIQFLEMASPSPGMFRAALYIPPKQRETDRLQETLSYRNQFLWSCIFLVPIFLFSM GLPMLHPYGNWLNFKIYRAFNVGMLLRWILCTPVQFIIGKRFYVGAYHALRRKSANMDVLVALGTNVAYVYSVYVVIKAMMSYNFEGQDFFETSTMLISF ILLGKYLEVVAKGKTSDALAKLTELSPETACLLTIDKAALSQIVQLVEAAQLARAPVQQLADRISRYFVPTVVAAAFITWLVWFIAGQADLYPKRLIPKA MDKFELALQFGISVLVIACPCALGLATPTAVMVATGKGASQGVLIKGGDSLEKAHTVKTVVFDKTGTLTAGKPQVVSAVLFSSFSMEEFCDMATAAEANS EHPIAKSVVAYTKRFRHKIGSIPDQVPEVKDFEVHTGAGVSGKVGDRFVIVGNRKLMRTYEVTLQPEVEKFILENEELARTCVLVAIDGKIAGAFAVTDP VKPEAQRVISYLRSMGITSIMVTGDNTATAAAIARDVGIDYFFAETDPLGKADKIKDLQGKGTKVAMVGDGINDSPALVAADVGMAIGAGTNVAIEAADI VLMKSNLEDVVTAIDLSRKTIARIRLNYVWALGYNVLGMPIAAGILYPFTGIRLPPWLAGGCMAASSLSVVCSSLLLQSYKKPLRVRDNWDCT

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DESeq2's median of ratios [FLAX]

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Coexpressed genes

Compare expression of checked genes Schematic diagram [FLAX] Schematic diagram [POPLAR]

*If you select 4 or less genes and then press "compare expression", expression will be shown as a graph. If you select more than 4 genes, expresion will be shown as a heat map.
*Color represents relative expression level among samples for each gene.

At best	At TF class	At alias	At description		Locus	MR	r	Symbol	HYP	R_s2_CTR	R_s2_Fox	R_s4_CTR	R_s4_Fox	R_r1_CTR	R_r1_Fox	R_r3_CTR	R_r3_Fox	R_r1s2_CTR	R_r1s2_Fox	R_r3s2_CTR	R_r3s2_Fox	R_s6_CTR	R_s6_Al4	R_s6_Al12	R_s6_Al24	R_s8_CTR	R_s8_Al4	R_s8_Al12	R_s8_Al24	R_r5_CTR	R_r5_Al4	R_r5_Al12	R_r5_Al24	R_r7_CTR	R_r7_Al4	R_r7_Al12	R_r7_Al24	LEAF_N	LEAF_P	LEAF_NPK	SAM	AR_Bet	AR_rdf	cPAR	TOP_Bet	TOP_rdf	iFIBa	iFIBb	MID_Bet	MID_rdf	tFIBa	tFIB_Gr	tFIB_Li	tFIB_Bi	tFIBb	tFIBb_PUL8	tFIBb_PUL24	tFIBb_PUL96	tFIBb_OPP8	tFIBb_OPP24	tFIBb_OPP96	sXYLa	sXYLb	sXYLb_PUL8	sXYLb_PUL24	sXYLb_PUL96	sXYLb_OPP8	sXYLb_OPP24	sXYLb_OPP96
AT5G44790		HMA7, RAN1	copper-exporting ATPase / resp...		Lus10031840 [exp]	0	1
AT5G06460		ATUBA2 ,UBA 2	ARABIDOPSIS THALIANA UBIQUITI...		Lus10031292 [exp]	1.4	0.8583
AT5G20070		ATNUDX19, ATNUD...	ARABIDOPSIS THALIANA NUDIX HYD...		Lus10030056 [exp]	3.0	0.8395
AT5G44800		PKR1, CHR4, MI-...	PICKLE RELATED 1, chromatin re...		Lus10036224 [exp]	3.5	0.8277
AT3G43600		AtAO3, atAO-2, ...	Arabidopsis thaliana aldehyde ...		Lus10008429 [exp]	4.2	0.7976
AT1G63440		HMA5	heavy metal atpase 5 (.1)		Lus10031273 [exp]	4.7	0.8554
AT5G62620			Galactosyltransferase family p...		Lus10036686 [exp]	6.6	0.7839
AT3G07940			Calcium-dependent ARF-type GTP...		Lus10039538 [exp]	7.5	0.7998
AT5G04930		ALA1	aminophospholipid ATPase 1 (.1...		Lus10034872 [exp]	7.5	0.8025
AT5G06740			Concanavalin A-like lectin pro...		Lus10009423 [exp]	7.7	0.7820
AT2G28550	AP2_ERF	TOE1, RAP2.7	TARGET OF EARLY ACTIVATION TAG...		Lus10018124 [exp]	8.7	0.7693

Compare expression of checked genes

Lus10031840 coexpression network

*The number of genes in the network is adjusted within 50 genes.
*Gene name represents symbol(s) of closest Arabidopsis gene if symbol(s) for the gene itself doesn't exist.
*Circle diameter represents the number of connection with other genes within this network.
*Color for gene name represents subnetwork based on the result of network clustering.