Plant FIBer expression Database

External link	JGI Phytozome v13 [genome browser]
Symbol
Arabidopsis homologues Show only best Show top 10	Locus ID BLAST score/e-value TF class Alias TAIR10 short description AT3G63530 160 / 1e-48 BB2, BB BIG BROTHER, RING/U-box superfamily protein (.1.2) AT3G19910 102 / 1e-25 RING/U-box superfamily protein (.1) AT5G52140 96 / 1e-23 RING/U-box superfamily protein (.1) AT3G47180 85 / 6e-20 RING/U-box superfamily protein (.1) AT5G10650 72 / 2e-14 RING/U-box superfamily protein (.1.2) AT5G24870 70 / 9e-14 RING/U-box superfamily protein (.1.2) AT3G15070 67 / 6e-13 RING/U-box superfamily protein (.1.2) AT4G34040 67 / 1e-12 RING/U-box superfamily protein (.1) AT1G53190 65 / 4e-12 RING/U-box superfamily protein (.1.2) AT5G42940 64 / 8e-12 RING/U-box superfamily protein (.1)
Paralogs Show only best Show top 10	Gene ID BLAST score/e-value At best hit BLAST score/e-value TAIR10 short description Lus10031275 [exp] 387 / 3e-138 AT3G63530 174 / 4e-54 BIG BROTHER, RING/U-box superfamily protein (.1.2) Lus10019703 [exp] 164 / 5e-50 AT3G63530 285 / 1e-97 BIG BROTHER, RING/U-box superfamily protein (.1.2) Lus10016416 [exp] 162 / 1e-49 AT3G63530 287 / 2e-98 BIG BROTHER, RING/U-box superfamily protein (.1.2) Lus10002554 [exp] 145 / 9e-44 AT3G63530 122 / 1e-34 BIG BROTHER, RING/U-box superfamily protein (.1.2) Lus10017385 [exp] 97 / 2e-23 AT3G19910 297 / 4e-99 RING/U-box superfamily protein (.1) Lus10010182 [exp] 96 / 8e-23 AT3G19910 298 / 2e-99 RING/U-box superfamily protein (.1) Lus10005768 [exp] 83 / 9e-19 AT5G52140 90 / 7e-21 RING/U-box superfamily protein (.1) Lus10010372 [exp] 74 / 7e-15 AT5G42940 353 / 2e-112 RING/U-box superfamily protein (.1) Lus10040389 [exp] 70 / 1e-13 AT2G37150 191 / 1e-53 RING/U-box superfamily protein (.1.2.3)
Poplar homologues Show only best Show top 10	Locus ID BLAST score/e-value At best hit BLAST score/e-value TAIR10 short description Potri.001G019600 [exp] 249 / 2e-83 AT3G63530 176 / 1e-54 BIG BROTHER, RING/U-box superfamily protein (.1.2) Potri.003G204500 [exp] 241 / 3e-80 AT3G63530 175 / 2e-54 BIG BROTHER, RING/U-box superfamily protein (.1.2) Potri.001G267700 [exp] 160 / 6e-49 AT3G63530 301 / 4e-104 BIG BROTHER, RING/U-box superfamily protein (.1.2) Potri.009G062100 [exp] 155 / 1e-46 AT3G63530 269 / 4e-91 BIG BROTHER, RING/U-box superfamily protein (.1.2) Potri.007G073200 [exp] 101 / 2e-25 AT3G19910 303 / 3e-102 RING/U-box superfamily protein (.1) Potri.005G090800 [exp] 100 / 8e-25 AT3G19910 187 / 5e-57 RING/U-box superfamily protein (.1) Potri.012G136400 [exp] 94 / 2e-23 AT5G52140 113 / 1e-30 RING/U-box superfamily protein (.1) Potri.015G138700 [exp] 81 / 3e-19 AT5G52140 72 / 6e-16 RING/U-box superfamily protein (.1) Potri.005G180300 [exp] 81 / 3e-18 AT3G47180 117 / 1e-32 RING/U-box superfamily protein (.1) Potri.002G080900 [exp] 80 / 4e-18 AT3G47180 117 / 7e-33 RING/U-box superfamily protein (.1)
PFAM info	Clan ID Clan name Pfam ID Pfam name Pfam description CL0229 [flax] [poplar] RING PF00097 [flax] [poplar] zf-C3HC4 Zinc finger, C3HC4 type (RING finger)
Representative CDS sequence Show only first row Show all	>Lus10031842 pacid=23180761 polypeptide=Lus10031842 locus=Lus10031842.g ID=Lus10031842.BGIv1.0 annot-version=v1.0 ATGGAGAATAGCAGCTACCCTTATAATTCCGCCGGAAGCTTCATGGAATACTTCCAAGGTCTCACCTTTGAACATGTCAATTTCATCTTTGATGGCCATG CTCCTCAGGAAAGCACTTCTAGTTTGTACAAGTTTGGTGCCTTTCGAACCGAGAGTAGTTCGTATGAAGTAGATGATCGTGGATCCCAGATTGATTCATT TGGAAGGTCCTTTCATGAAATACATGATCATGAGAACATAACCACCGATGGAACTCCTCTTGACTGTGTGGGGAGACATCATAGCGATCCCGATTATCAG GCTGTATGGCAAGACATGTTCGATCCCGACAGTATGACTTACGAGGAACTGCTAGAACTAGGTGAGGCAGTCGGAAGCCAGAATCGAGGACTGTCCAAAG AACTCATCTCTTCCCTTCCGGTCTCTAAATACAAGTGCTGTTTCTTCTCGAGGCGGAAATCACGAACCGAAAGGTGTGTAATATGTCAAATGGAGTACAA GCGAGGCGAGAAGCGCATCACCCTACCATGTAAACACATCTACCATGCCAGTTGCGGATCGAAATGGCTCAGCATCAATAAGGGATGCATGCAATCAATG TCACATCTTTTGAGGAAGGAAAGTTTGGAGGCCTTGATTCCTTTCATGGGTCAAATAGTCTTGGAACTTTTCAACCCGGCTACGGTTTCGAGAGACGGTC TTTAG
AA sequence Show only first row Show all	>Lus10031842 pacid=23180761 polypeptide=Lus10031842 locus=Lus10031842.g ID=Lus10031842.BGIv1.0 annot-version=v1.0 MENSSYPYNSAGSFMEYFQGLTFEHVNFIFDGHAPQESTSSLYKFGAFRTESSSYEVDDRGSQIDSFGRSFHEIHDHENITTDGTPLDCVGRHHSDPDYQ AVWQDMFDPDSMTYEELLELGEAVGSQNRGLSKELISSLPVSKYKCCFFSRRKSRTERCVICQMEYKRGEKRITLPCKHIYHASCGSKWLSINKGCMQSM SHLLRKESLEALIPFMGQIVLELFNPATVSRDGL

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DESeq2's median of ratios [FLAX]

Order by: Tissue Experiment Show only core collection Show again Show schematic diagram

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Coexpressed genes

Compare expression of checked genes Schematic diagram [FLAX] Schematic diagram [POPLAR]

*If you select 4 or less genes and then press "compare expression", expression will be shown as a graph. If you select more than 4 genes, expresion will be shown as a heat map.
*Color represents relative expression level among samples for each gene.

At best	At TF class	At alias	At description		Locus	MR	r	Symbol	HYP	R_s2_CTR	R_s2_Fox	R_s4_CTR	R_s4_Fox	R_r1_CTR	R_r1_Fox	R_r3_CTR	R_r3_Fox	R_r1s2_CTR	R_r1s2_Fox	R_r3s2_CTR	R_r3s2_Fox	R_s6_CTR	R_s6_Al4	R_s6_Al12	R_s6_Al24	R_s8_CTR	R_s8_Al4	R_s8_Al12	R_s8_Al24	R_r5_CTR	R_r5_Al4	R_r5_Al12	R_r5_Al24	R_r7_CTR	R_r7_Al4	R_r7_Al12	R_r7_Al24	LEAF_N	LEAF_P	LEAF_NPK	SAM	AR_Bet	AR_rdf	cPAR	TOP_Bet	TOP_rdf	iFIBa	iFIBb	MID_Bet	MID_rdf	tFIBa	tFIB_Gr	tFIB_Li	tFIB_Bi	tFIBb	tFIBb_PUL8	tFIBb_PUL24	tFIBb_PUL96	tFIBb_OPP8	tFIBb_OPP24	tFIBb_OPP96	sXYLa	sXYLb	sXYLb_PUL8	sXYLb_PUL24	sXYLb_PUL96	sXYLb_OPP8	sXYLb_OPP24	sXYLb_OPP96
AT3G63530		BB2, BB	BIG BROTHER, RING/U-box superf...		Lus10031842 [exp]	0	1
AT1G77580			Plant protein of unknown funct...		Lus10018164 [exp]	2.8	0.7676
AT1G02410			cytochrome c oxidase assembly ...		Lus10031633 [exp]	4.2	0.7449
AT5G65770		CRWN4, LINC4	CROWDED NUCLEI 4, little nucle...		Lus10019257 [exp]	6.7	0.5962
AT5G13710		CPH, SMT1	CEPHALOPOD, sterol methyltrans...		Lus10039600 [exp]	8.1	0.7486
AT5G13710		CPH, SMT1	CEPHALOPOD, sterol methyltrans...		Lus10029498 [exp]	10.6	0.7027
AT1G77580			Plant protein of unknown funct...		Lus10025674 [exp]	12.4	0.6901
AT4G01040			Glycosyl hydrolase superfamily...		Lus10005946 [exp]	25.8	0.6790
AT1G62640		KAS III, KASIII	3-ketoacyl-acyl carrier protei...		Lus10004342 [exp]	31.7	0.6710
AT4G39150			DNAJ heat shock N-terminal dom...		Lus10041972 [exp]	36.2	0.6608
AT4G11290			Peroxidase superfamily protein...		Lus10039681 [exp]	36.7	0.6112

Compare expression of checked genes

Lus10031842 coexpression network

*The number of genes in the network is adjusted within 50 genes.
*Gene name represents symbol(s) of closest Arabidopsis gene if symbol(s) for the gene itself doesn't exist.
*Circle diameter represents the number of connection with other genes within this network.
*Color for gene name represents subnetwork based on the result of network clustering.