Plant FIBer expression Database

External link	JGI Phytozome v13 [genome browser]
Symbol
Arabidopsis homologues Show only best Show top 10	Locus ID BLAST score/e-value TF class Alias TAIR10 short description AT3G08580 542 / 0 AAC1 ADP/ATP carrier 1 (.1.2) AT5G13490 541 / 0 AAC2 ADP/ATP carrier 2 (.1.2) AT4G28390 490 / 1e-174 ATAAC3, AAC3 ADP/ATP carrier 3 (.1) AT5G17400 333 / 1e-113 ER-ANT1 endoplasmic reticulum-adenine nucleotide transporter 1 (.1) AT5G56450 192 / 3e-58 PM-ANT Mitochondrial substrate carrier family protein (.1) AT4G26180 121 / 2e-31 Mitochondrial substrate carrier family protein (.1) AT3G55640 106 / 5e-26 Mitochondrial substrate carrier family protein (.1) AT2G37890 105 / 9e-26 Mitochondrial substrate carrier family protein (.1) AT4G01100 104 / 5e-25 ADNT1 adenine nucleotide transporter 1 (.1.2) AT3G53940 101 / 7e-24 Mitochondrial substrate carrier family protein (.1)
Paralogs Show only best Show top 10	Gene ID BLAST score/e-value At best hit BLAST score/e-value TAIR10 short description Lus10031276 [exp] 641 / 0 AT5G13490 582 / 0.0 ADP/ATP carrier 2 (.1.2) Lus10016418 [exp] 542 / 0 AT5G13490 612 / 0.0 ADP/ATP carrier 2 (.1.2) Lus10019702 [exp] 542 / 0 AT5G13490 612 / 0.0 ADP/ATP carrier 2 (.1.2) Lus10019701 [exp] 536 / 0 AT5G13490 607 / 0.0 ADP/ATP carrier 2 (.1.2) Lus10016417 [exp] 532 / 0 AT5G13490 602 / 0.0 ADP/ATP carrier 2 (.1.2) Lus10039847 [exp] 487 / 2e-173 AT4G28390 545 / 0.0 ADP/ATP carrier 3 (.1) Lus10034658 [exp] 321 / 7e-109 AT5G17400 491 / 5e-177 endoplasmic reticulum-adenine nucleotide transporter 1 (.1) Lus10017874 [exp] 312 / 1e-105 AT5G17400 473 / 5e-170 endoplasmic reticulum-adenine nucleotide transporter 1 (.1) Lus10018612 [exp] 261 / 8e-87 AT5G13490 301 / 1e-102 ADP/ATP carrier 2 (.1.2)
Poplar homologues Show only best Show top 10	Locus ID BLAST score/e-value At best hit BLAST score/e-value TAIR10 short description Potri.003G204600 [exp] 562 / 0 AT5G13490 582 / 0.0 ADP/ATP carrier 2 (.1.2) Potri.001G019400 [exp] 561 / 0 AT5G13490 580 / 0.0 ADP/ATP carrier 2 (.1.2) Potri.009G062200 [exp] 546 / 0 AT5G13490 625 / 0.0 ADP/ATP carrier 2 (.1.2) Potri.001G267800 [exp] 545 / 0 AT3G08580 592 / 0.0 ADP/ATP carrier 1 (.1.2) Potri.017G012800 [exp] 504 / 8e-180 AT4G28390 575 / 0.0 ADP/ATP carrier 3 (.1) Potri.007G139100 [exp] 502 / 3e-179 AT4G28390 572 / 0.0 ADP/ATP carrier 3 (.1) Potri.012G062500 [exp] 308 / 7e-104 AT5G17400 416 / 5e-147 endoplasmic reticulum-adenine nucleotide transporter 1 (.1) Potri.006G227100 [exp] 197 / 2e-60 AT5G56450 462 / 4e-165 Mitochondrial substrate carrier family protein (.1) Potri.006G153600 [exp] 111 / 9e-28 AT4G26180 475 / 4e-170 Mitochondrial substrate carrier family protein (.1) Potri.006G226300 [exp] 107 / 5e-26 AT1G14560 476 / 7e-170 Mitochondrial substrate carrier family protein (.1)
PFAM info	Clan ID Clan name Pfam ID Pfam name Pfam description PF00153 [flax] [poplar] Mito_carr Mitochondrial carrier protein
Representative CDS sequence Show only first row Show all	>Lus10031843 pacid=23180571 polypeptide=Lus10031843 locus=Lus10031843.g ID=Lus10031843.BGIv1.0 annot-version=v1.0 ATGTCTGATCATCAGCATCAACAACTATCACAGATAGTCCAGAGGATGAAAACATCCAGTGGCAGCAGCATCATCGTCCCGAGGAGGGATTTCGCGTATG GAAACTATACGAACCCCACGTTTTCGATCCTGACCACCACTACACATCCAGTGGTTGTGCAGGCCCCATCGGAGAAAGGGCTTGCGGGTTTTGCAATCGA TTTCATGATGGGCGGGGTCTCTGCGGCCGTTTCCAAAACTGCCGCAGCTCCCATCGAGCGCGTGAAGCTGCTGATCCAGAATCAGGACGAGATGATCAAG GCCGGAAGGCTTTCGGAGCCTTACAAGGGGATTGGTGACTGTTTCTCTAGGACCATGAAGGATGAAGGCATGATGTCCCTGTGGAGAGGGAACACAGCTA ATGTCATTCGTTATTTCCCCACGCAGGCACTGAACTTTGCCTTCAAGGACTACTTCAAGAGGCTGTTCAACTTCAAGAAGGACAGAGACGGCTACTGGAA GTGGTTTGCGGGGAACTTGGCATCCGGTGGAGCAGCCGGTGCTTCGTCACTCTTTTTCGTGTACTCACTCGACTATGCTCGAACCAGGCTCGCCAACGAT GCCAAGGCTGCCAAGAAAGGAGGTGGCGGGAGACAATTCAACGGGCTCGTTGATGTCTACAAGAAGACGATGCAGAGTGATGGCATTGCCGGCCTTTACC GTGGCTTCAACATCTCTTGTGTTGGCATCATTGTCTACCGTGGTCTCTATTTCGGCATGTACGACTCCCTCAAGCCTGTCGTCCTCACCGGGAATCTCCA GGATAGCTTCTTTGCAAGCTTTGCACTTGGTTGGCTAATCACAAACGGCGCCGGATTAGCTTCGTACCCAATTGACACCGTCCGGAGAAGAATGATGATG ACCTCCGGCGAATCAGTGAAGTACAGCAGCTCCATGGACGCATTCTCCCAGATCCTCAAGAACGAAGGTGCCAAGTCACTCTTCAAGGGCGCCGGAGCCA ACATCCTCCGGGCCGTGGCCGGAGCTGGTGTCCTCGCCGGATACGACAAGCTGCAGGTGATCGTGCTCGGAAAGAAGTACGGCTCCGGTGGTGCTTAA
AA sequence Show only first row Show all	>Lus10031843 pacid=23180571 polypeptide=Lus10031843 locus=Lus10031843.g ID=Lus10031843.BGIv1.0 annot-version=v1.0 MSDHQHQQLSQIVQRMKTSSGSSIIVPRRDFAYGNYTNPTFSILTTTTHPVVVQAPSEKGLAGFAIDFMMGGVSAAVSKTAAAPIERVKLLIQNQDEMIK AGRLSEPYKGIGDCFSRTMKDEGMMSLWRGNTANVIRYFPTQALNFAFKDYFKRLFNFKKDRDGYWKWFAGNLASGGAAGASSLFFVYSLDYARTRLAND AKAAKKGGGGRQFNGLVDVYKKTMQSDGIAGLYRGFNISCVGIIVYRGLYFGMYDSLKPVVLTGNLQDSFFASFALGWLITNGAGLASYPIDTVRRRMMM TSGESVKYSSSMDAFSQILKNEGAKSLFKGAGANILRAVAGAGVLAGYDKLQVIVLGKKYGSGGA

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DESeq2's median of ratios [FLAX]

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Coexpressed genes

Compare expression of checked genes Schematic diagram [FLAX] Schematic diagram [POPLAR]

*If you select 4 or less genes and then press "compare expression", expression will be shown as a graph. If you select more than 4 genes, expresion will be shown as a heat map.
*Color represents relative expression level among samples for each gene.

At best	At TF class	At alias	At description		Locus	MR	r	Symbol	HYP	R_s2_CTR	R_s2_Fox	R_s4_CTR	R_s4_Fox	R_r1_CTR	R_r1_Fox	R_r3_CTR	R_r3_Fox	R_r1s2_CTR	R_r1s2_Fox	R_r3s2_CTR	R_r3s2_Fox	R_s6_CTR	R_s6_Al4	R_s6_Al12	R_s6_Al24	R_s8_CTR	R_s8_Al4	R_s8_Al12	R_s8_Al24	R_r5_CTR	R_r5_Al4	R_r5_Al12	R_r5_Al24	R_r7_CTR	R_r7_Al4	R_r7_Al12	R_r7_Al24	LEAF_N	LEAF_P	LEAF_NPK	SAM	AR_Bet	AR_rdf	cPAR	TOP_Bet	TOP_rdf	iFIBa	iFIBb	MID_Bet	MID_rdf	tFIBa	tFIB_Gr	tFIB_Li	tFIB_Bi	tFIBb	tFIBb_PUL8	tFIBb_PUL24	tFIBb_PUL96	tFIBb_OPP8	tFIBb_OPP24	tFIBb_OPP96	sXYLa	sXYLb	sXYLb_PUL8	sXYLb_PUL24	sXYLb_PUL96	sXYLb_OPP8	sXYLb_OPP24	sXYLb_OPP96
AT5G13490		AAC2	ADP/ATP carrier 2 (.1.2)		Lus10031843 [exp]	0	1
AT1G24140			Matrixin family protein (.1)		Lus10005605 [exp]	2.0	0.9785
AT1G24140			Matrixin family protein (.1)		Lus10039464 [exp]	2.4	0.9761
AT3G54420		ATCHITIV, CHIV,...	CHITINASE CLASS IV, homolog of...		Lus10024366 [exp]	3.5	0.9714
AT4G34980		SLP2	subtilisin-like serine proteas...		Lus10002397 [exp]	3.7	0.8894
AT5G26340		ATSTP13, MSS1, ...	SUGAR TRANSPORT PROTEIN 13, Ma...		Lus10021924 [exp]	4.7	0.8988
AT5G45890		SAG12	senescence-associated gene 12 ...		Lus10025410 [exp]	6.3	0.9429
AT3G57260		AtPR2, PR-2, PR...	PATHOGENESIS-RELATED PROTEIN 2...		Lus10027860 [exp]	6.3	0.9515
AT1G75620			glyoxal oxidase-related protei...		Lus10024312 [exp]	7.0	0.9193
AT3G54420		ATCHITIV, CHIV,...	CHITINASE CLASS IV, homolog of...		Lus10010864 [exp]	8.5	0.9205
AT3G54420		ATCHITIV, CHIV,...	CHITINASE CLASS IV, homolog of...		Lus10010866 [exp]	8.7	0.8876

Compare expression of checked genes

Lus10031843 coexpression network

*The number of genes in the network is adjusted within 50 genes.
*Gene name represents symbol(s) of closest Arabidopsis gene if symbol(s) for the gene itself doesn't exist.
*Circle diameter represents the number of connection with other genes within this network.
*Color for gene name represents subnetwork based on the result of network clustering.