Plant FIBer expression Database

External link	JGI Phytozome v13 [genome browser]
Symbol
Arabidopsis homologues Show only best Show top 10	Locus ID BLAST score/e-value TF class Alias TAIR10 short description AT5G19350 533 / 0 RNA-binding (RRM/RBD/RNP motifs) family protein (.1), RNA-binding (RRM/RBD/RNP motifs) family protein (.2) AT3G19130 364 / 2e-123 ATRBP47B RNA-binding protein 47B (.1) AT5G54900 352 / 4e-119 ATRBP45A RNA-binding protein 45A (.1) AT1G47500 353 / 7e-119 ATRBP47C' RNA-binding protein 47C' (.1) AT1G47490 350 / 5e-118 ATRBP47C RNA-binding protein 47C (.1.2) AT1G49600 346 / 5e-116 ATRBP47A RNA-binding protein 47A (.1) AT1G11650 343 / 2e-115 ATRBP45B RNA-binding (RRM/RBD/RNP motifs) family protein (.1), RNA-binding (RRM/RBD/RNP motifs) family protein (.2) AT4G27000 334 / 8e-112 ATRBP45C RNA-binding (RRM/RBD/RNP motifs) family protein (.1) AT1G54080 147 / 8e-40 UBP1A oligouridylate-binding protein 1A (.1.2) AT1G17370 139 / 4e-37 UBP1B oligouridylate binding protein 1B (.1.2)
Paralogs Show only best Show top 10	Gene ID BLAST score/e-value At best hit BLAST score/e-value TAIR10 short description Lus10031277 [exp] 769 / 0 AT5G19350 558 / 0.0 RNA-binding (RRM/RBD/RNP motifs) family protein (.1), RNA-binding (RRM/RBD/RNP motifs) family protein (.2) Lus10021754 [exp] 371 / 1e-125 AT1G47490 509 / 1e-179 RNA-binding protein 47C (.1.2) Lus10012070 [exp] 357 / 6e-121 AT1G49600 470 / 5e-165 RNA-binding protein 47A (.1) Lus10018345 [exp] 351 / 7e-119 AT1G11650 439 / 1e-153 RNA-binding (RRM/RBD/RNP motifs) family protein (.1), RNA-binding (RRM/RBD/RNP motifs) family protein (.2) Lus10014029 [exp] 348 / 1e-118 AT3G19130 455 / 1e-160 RNA-binding protein 47B (.1) Lus10019889 [exp] 341 / 1e-115 AT3G19130 450 / 1e-158 RNA-binding protein 47B (.1) Lus10012071 [exp] 336 / 7e-114 AT1G49600 442 / 2e-155 RNA-binding protein 47A (.1) Lus10027373 [exp] 334 / 2e-113 AT5G19350 293 / 2e-97 RNA-binding (RRM/RBD/RNP motifs) family protein (.1), RNA-binding (RRM/RBD/RNP motifs) family protein (.2) Lus10027911 [exp] 316 / 4e-106 AT1G49600 411 / 3e-143 RNA-binding protein 47A (.1)
Poplar homologues Show only best Show top 10	Locus ID BLAST score/e-value At best hit BLAST score/e-value TAIR10 short description Potri.009G054400 [exp] 630 / 0 AT5G19350 554 / 0.0 RNA-binding (RRM/RBD/RNP motifs) family protein (.1), RNA-binding (RRM/RBD/RNP motifs) family protein (.2) Potri.009G105300 [exp] 380 / 1e-129 AT3G19130 479 / 6e-168 RNA-binding protein 47B (.1) Potri.004G143400 [exp] 374 / 4e-127 AT3G19130 480 / 2e-168 RNA-binding protein 47B (.1) Potri.014G034600 [exp] 374 / 4e-127 AT1G47490 439 / 2e-152 RNA-binding protein 47C (.1.2) Potri.002G128100 [exp] 366 / 3e-124 AT1G47490 404 / 6e-139 RNA-binding protein 47C (.1.2) Potri.001G423400 [exp] 354 / 2e-119 AT4G27000 474 / 2e-166 RNA-binding (RRM/RBD/RNP motifs) family protein (.1) Potri.011G138400 [exp] 351 / 9e-119 AT4G27000 463 / 1e-162 RNA-binding (RRM/RBD/RNP motifs) family protein (.1) Potri.004G017200 [exp] 346 / 1e-116 AT1G11650 423 / 4e-147 RNA-binding (RRM/RBD/RNP motifs) family protein (.1), RNA-binding (RRM/RBD/RNP motifs) family protein (.2) Potri.006G279600 [exp] 145 / 4e-39 AT1G17370 469 / 9e-165 oligouridylate binding protein 1B (.1.2) Potri.018G002300 [exp] 142 / 4e-38 AT1G17370 461 / 1e-161 oligouridylate binding protein 1B (.1.2)
PFAM info	Clan ID Clan name Pfam ID Pfam name Pfam description CL0221 [flax] [poplar] RRM PF00076 [flax] [poplar] RRM_1 RNA recognition motif. (a.k.a. RRM, RBD, or RNP domain)
Representative CDS sequence Show only first row Show all	>Lus10031844 pacid=23180651 polypeptide=Lus10031844 locus=Lus10031844.g ID=Lus10031844.BGIv1.0 annot-version=v1.0 ATGGCGGCACCACCAACGGCGATGCATTACCATCAACCGGCGACCCTGGAAGAAGTCCGAACTCTCTGGATTGGGGATTTACAGTACTGGGCCGATGAAA ACTACCTCACCTCTTGCTTCTCCCACACCGGCGAGTTGGTCTCCGTCAAAATCATCCGTAACAAGTTGACTGGCCAGCCGGAAGGATATGGGTTTGTGGA GTTCGTTTCTCACCAGGCAGCTGAAAGGGTCCTACAGACGTACAATGGAACTCAAATGCCAGGTACTGAGCTGACGTTCAGACTGAACTGGGCATCCTTT GGAACTGGAGAAAGGCGTCCTGATGCAGGCCCCGAACATTCTATCTTCGTAGGGGATTTAGCTCCCGACGTTACGGATTTGCTACTGCAAGAGACGTTCA GGACTCAGTATGTGTCTGTTAGAGGGGCTAAGGTTGTGACTGATCCGAACACTGGGCGTTCGAAGGGATATGGGTTTGTTAAGTTCGCCGATGAGAATGA GAGGAACCGCGCCATGAGCGAAATGAATGGAGTTTATTGCTCGACTAGGCCGATGCGTATTAGCGCTGCTACGCCGAAGAAGACTACCGGTTATCAGCAG CAGTATCCTGCTGCTGTGAAAGCCGTGTATCCAGCTCCCGCGTATACAACACCTGTGCAGGTAGTTTCGGCAGCTGATAATGACCTAACGAATACCACTA TTTTCGTTGGGAACTTAGATCCTGCTATCACGGAAGAGGAGCTGAAGCAAACGTTTTCTCAGCTTGGAGAGATCGTGTACGTCAAAATTCCTGTTGGCAG AGGATGTGGCTTTGTGCAATTTTCGGCTAGAGCATCTGCCGAGGATGCTATGCAAAGGATGCAGGGCCAGTTCATTGGTCAGCAGCCAGTTCGTATCTCT TGGGGCAGGAAGCAGGACATTACTGCTAGTTGGGGTCAGCAAGTAGATCCATGGAGTGCTTATTATGGTTATGGACAACAAGGCTACGATGCGTATGGCT ACGGAGCAGCTGCTCAGGATCCGTCAATGTATGCATATGCCGGATACACGGGCTATCAACAGGTTGAAGGTGCTCAAGACATGACAGGTGGTGTGCCAAT GGTGGATCAGAGGGAAGAGATATACGATCCTTTGGCAGCTCCTGATGTTGATAAGCTAAATTCAGCTTACCTTGCTGTTCACGGCAGTGCAATCTTAGGG CGGCCGTTATGGATGAGAACATCATCACTTTCACAAGCTTAG
AA sequence Show only first row Show all	>Lus10031844 pacid=23180651 polypeptide=Lus10031844 locus=Lus10031844.g ID=Lus10031844.BGIv1.0 annot-version=v1.0 MAAPPTAMHYHQPATLEEVRTLWIGDLQYWADENYLTSCFSHTGELVSVKIIRNKLTGQPEGYGFVEFVSHQAAERVLQTYNGTQMPGTELTFRLNWASF GTGERRPDAGPEHSIFVGDLAPDVTDLLLQETFRTQYVSVRGAKVVTDPNTGRSKGYGFVKFADENERNRAMSEMNGVYCSTRPMRISAATPKKTTGYQQ QYPAAVKAVYPAPAYTTPVQVVSAADNDLTNTTIFVGNLDPAITEEELKQTFSQLGEIVYVKIPVGRGCGFVQFSARASAEDAMQRMQGQFIGQQPVRIS WGRKQDITASWGQQVDPWSAYYGYGQQGYDAYGYGAAAQDPSMYAYAGYTGYQQVEGAQDMTGGVPMVDQREEIYDPLAAPDVDKLNSAYLAVHGSAILG RPLWMRTSSLSQA

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DESeq2's median of ratios [FLAX]

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Coexpressed genes

Compare expression of checked genes Schematic diagram [FLAX] Schematic diagram [POPLAR]

*If you select 4 or less genes and then press "compare expression", expression will be shown as a graph. If you select more than 4 genes, expresion will be shown as a heat map.
*Color represents relative expression level among samples for each gene.

At best	At TF class	At alias	At description		Locus	MR	r	Symbol	HYP	R_s2_CTR	R_s2_Fox	R_s4_CTR	R_s4_Fox	R_r1_CTR	R_r1_Fox	R_r3_CTR	R_r3_Fox	R_r1s2_CTR	R_r1s2_Fox	R_r3s2_CTR	R_r3s2_Fox	R_s6_CTR	R_s6_Al4	R_s6_Al12	R_s6_Al24	R_s8_CTR	R_s8_Al4	R_s8_Al12	R_s8_Al24	R_r5_CTR	R_r5_Al4	R_r5_Al12	R_r5_Al24	R_r7_CTR	R_r7_Al4	R_r7_Al12	R_r7_Al24	LEAF_N	LEAF_P	LEAF_NPK	SAM	AR_Bet	AR_rdf	cPAR	TOP_Bet	TOP_rdf	iFIBa	iFIBb	MID_Bet	MID_rdf	tFIBa	tFIB_Gr	tFIB_Li	tFIB_Bi	tFIBb	tFIBb_PUL8	tFIBb_PUL24	tFIBb_PUL96	tFIBb_OPP8	tFIBb_OPP24	tFIBb_OPP96	sXYLa	sXYLb	sXYLb_PUL8	sXYLb_PUL24	sXYLb_PUL96	sXYLb_OPP8	sXYLb_OPP24	sXYLb_OPP96
AT5G19350			RNA-binding (RRM/RBD/RNP motif...		Lus10031844 [exp]	0	1
AT5G42820	C3HZnF	ATU2AF35B	Zinc finger C-x8-C-x5-C-x3-H t...		Lus10003375 [exp]	2.0	0.9438
AT5G08450			unknown protein		Lus10019217 [exp]	3.9	0.9274
AT5G42960			unknown protein		Lus10007162 [exp]	4.0	0.9393
AT3G03140			Tudor/PWWP/MBT superfamily pro...		Lus10004108 [exp]	4.8	0.9204
AT4G26190			Haloacid dehalogenase-like hyd...		Lus10034676 [exp]	6.5	0.9322
AT3G53580			diaminopimelate epimerase fami...		Lus10025303 [exp]	7.1	0.9378
AT3G26340			N-terminal nucleophile aminohy...		Lus10011369 [exp]	7.5	0.9363
AT5G19350			RNA-binding (RRM/RBD/RNP motif...		Lus10031277 [exp]	8.5	0.9236
AT5G08550		ILP1	increased level of polyploidy1...		Lus10001926 [exp]	9.9	0.9316
AT4G26690		GDPDL3, GPDL2, ...	SHAVEN 3, MUTANT ROOT HAIR 5, ...		Lus10032576 [exp]	12.4	0.9257

Compare expression of checked genes

Lus10031844 coexpression network

*The number of genes in the network is adjusted within 50 genes.
*Gene name represents symbol(s) of closest Arabidopsis gene if symbol(s) for the gene itself doesn't exist.
*Circle diameter represents the number of connection with other genes within this network.
*Color for gene name represents subnetwork based on the result of network clustering.