Plant FIBer expression Database

External link	JGI Phytozome v13 [genome browser]
Symbol
Arabidopsis homologues Show only best Show top 10	Locus ID BLAST score/e-value TF class Alias TAIR10 short description AT5G63510 179 / 1e-57 GAMMACAL1 ,GAMMA CAL1 gamma carbonic anhydrase like 1 (.1.2) AT3G48680 179 / 2e-57 AtCAL2, GAMMACAL2 ,GAMMA CAL2 gamma carbonic anhydrase-like 2 (.1) AT5G66510 67 / 4e-14 CA3, GAMMACA3 ,GAMMA CA3 gamma carbonic anhydrase 3 (.1.2) AT1G47260 63 / 1e-12 APFI, GAMMACA2 ,GAMMA CA2 gamma carbonic anhydrase 2 (.1) AT1G19580 62 / 3e-12 GAMMACA1 ,GAMMA CA1 gamma carbonic anhydrase 1 (.1.2)
Paralogs Show only best Show top 10	Gene ID BLAST score/e-value At best hit BLAST score/e-value TAIR10 short description Lus10031845 [exp] 259 / 6e-89 AT3G48680 403 / 5e-144 gamma carbonic anhydrase-like 2 (.1) Lus10031278 [exp] 243 / 1e-82 AT3G48680 403 / 5e-144 gamma carbonic anhydrase-like 2 (.1) Lus10024267 [exp] 66 / 1e-13 AT1G19580 476 / 3e-172 gamma carbonic anhydrase 1 (.1.2) Lus10001959 [exp] 66 / 1e-13 AT1G19580 476 / 3e-172 gamma carbonic anhydrase 1 (.1.2) Lus10041768 [exp] 64 / 4e-13 AT1G19580 459 / 2e-165 gamma carbonic anhydrase 1 (.1.2) Lus10028321 [exp] 64 / 7e-13 AT1G19580 467 / 1e-168 gamma carbonic anhydrase 1 (.1.2)
Poplar homologues Show only best Show top 10	Locus ID BLAST score/e-value At best hit BLAST score/e-value TAIR10 short description Potri.012G100400 [exp] 195 / 4e-64 AT3G48680 389 / 3e-138 gamma carbonic anhydrase-like 2 (.1) Potri.015G098600 [exp] 174 / 1e-55 AT3G48680 374 / 2e-132 gamma carbonic anhydrase-like 2 (.1) Potri.002G034100 [exp] 66 / 7e-14 AT1G19580 497 / 2e-180 gamma carbonic anhydrase 1 (.1.2) Potri.005G229000 [exp] 64 / 5e-13 AT1G19580 498 / 0.0 gamma carbonic anhydrase 1 (.1.2) Potri.005G120800 [exp] 64 / 7e-13 AT1G19580 480 / 7e-174 gamma carbonic anhydrase 1 (.1.2)
PFAM info
Representative CDS sequence Show only first row Show all	>Lus10031847 pacid=23180688 polypeptide=Lus10031847 locus=Lus10031847.g ID=Lus10031847.BGIv1.0 annot-version=v1.0 ATGGCGACTGCCCTAGCTCGCATCTCCAAGAAGGCCGTAGCAGCGGCTTCATTTTCCCAATACCGTCAGCTCATCACACGCGCCGTCGCGACCGAGGCGG CGTCGTCGTCGAAAACGATCACCCCGTCTCCAGATCAAGTGAAGTGGGATTACCGAGGTCAGCGGCAGATAATCCCTCTGGGCCAGTGGCTCCCCAAGAT CGCTGTCGACGCTTACGTCGCGCCGAACGTCGTCCTCGCCGGTCAGGTCAGGGTCTGCGACGGAGCTTCCGTGTGGAACGGGTGTGTTCTCCGGGGCGAT CTCAACAAGATCACCGTCGGATTCTGCTCCAATGTCCAGGAACGCTCTGTCCTCCATGCCGCCTGGAATTCCCCCACAGACGAATTTGTTGATGCTTGA
AA sequence Show only first row Show all	>Lus10031847 pacid=23180688 polypeptide=Lus10031847 locus=Lus10031847.g ID=Lus10031847.BGIv1.0 annot-version=v1.0 MATALARISKKAVAAASFSQYRQLITRAVATEAASSSKTITPSPDQVKWDYRGQRQIIPLGQWLPKIAVDAYVAPNVVLAGQVRVCDGASVWNGCVLRGD LNKITVGFCSNVQERSVLHAAWNSPTDEFVDA

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DESeq2's median of ratios [FLAX]

Order by: Tissue Experiment Show only core collection Show again Show schematic diagram

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Coexpressed genes

Compare expression of checked genes Schematic diagram [FLAX] Schematic diagram [POPLAR]

*If you select 4 or less genes and then press "compare expression", expression will be shown as a graph. If you select more than 4 genes, expresion will be shown as a heat map.
*Color represents relative expression level among samples for each gene.

At best	At TF class	At alias	At description		Locus	MR	r	Symbol	HYP	R_s2_CTR	R_s2_Fox	R_s4_CTR	R_s4_Fox	R_r1_CTR	R_r1_Fox	R_r3_CTR	R_r3_Fox	R_r1s2_CTR	R_r1s2_Fox	R_r3s2_CTR	R_r3s2_Fox	R_s6_CTR	R_s6_Al4	R_s6_Al12	R_s6_Al24	R_s8_CTR	R_s8_Al4	R_s8_Al12	R_s8_Al24	R_r5_CTR	R_r5_Al4	R_r5_Al12	R_r5_Al24	R_r7_CTR	R_r7_Al4	R_r7_Al12	R_r7_Al24	LEAF_N	LEAF_P	LEAF_NPK	SAM	AR_Bet	AR_rdf	cPAR	TOP_Bet	TOP_rdf	iFIBa	iFIBb	MID_Bet	MID_rdf	tFIBa	tFIB_Gr	tFIB_Li	tFIB_Bi	tFIBb	tFIBb_PUL8	tFIBb_PUL24	tFIBb_PUL96	tFIBb_OPP8	tFIBb_OPP24	tFIBb_OPP96	sXYLa	sXYLb	sXYLb_PUL8	sXYLb_PUL24	sXYLb_PUL96	sXYLb_OPP8	sXYLb_OPP24	sXYLb_OPP96
AT3G48680		AtCAL2, GAMMACA...	gamma carbonic anhydrase-like ...		Lus10031847 [exp]	0	1
AT3G14240			Subtilase family protein (.1)		Lus10034517 [exp]	1.4	0.9576
AT3G14240			Subtilase family protein (.1)		Lus10034178 [exp]	2.0	0.9438
AT5G62440			Protein of unknown function (D...		Lus10023594 [exp]	2.2	0.8868
AT3G14240			Subtilase family protein (.1)		Lus10037449 [exp]	4.2	0.8889
AT3G07480			2Fe-2S ferredoxin-like superfa...		Lus10009565 [exp]	4.5	0.8879
AT3G06720		IMPA1, IMPA-1, ...	importin alpha isoform 1 (.1.2...		Lus10036330 [exp]	6.1	0.8371
AT2G40950	bZIP	BZIP17	Basic-leucine zipper (bZIP) tr...		Lus10012104 [exp]	7.5	0.8722
AT2G17800		ARAC1, ATGP2, A...	RHO-RELATED GTPASES FROM PLANT...		Lus10041881 [exp]	7.9	0.8744
AT5G22280			unknown protein		Lus10034182 [exp]	8.8	0.8150
AT1G11840		ATGLX1	glyoxalase I homolog (.1.2.3.4...		Lus10000007 [exp]	8.9	0.8362

Compare expression of checked genes

Lus10031847 coexpression network

*The number of genes in the network is adjusted within 50 genes.
*Gene name represents symbol(s) of closest Arabidopsis gene if symbol(s) for the gene itself doesn't exist.
*Circle diameter represents the number of connection with other genes within this network.
*Color for gene name represents subnetwork based on the result of network clustering.