Plant FIBer expression Database

External link	JGI Phytozome v13 [genome browser]
Symbol
Arabidopsis homologues Show only best Show top 10	Locus ID BLAST score/e-value TF class Alias TAIR10 short description AT4G36250 549 / 0 ALDH3F1 aldehyde dehydrogenase 3F1 (.1) AT1G44170 477 / 9e-166 ALDH4, ALDH3H1 aldehyde dehydrogenase 4, aldehyde dehydrogenase 3H1 (.1.2.3) AT4G34240 447 / 4e-153 ALDH3I1 aldehyde dehydrogenase 3I1 (.1.2) AT3G66658 164 / 2e-44 ALDH22A1 aldehyde dehydrogenase 22A1 (.1.2) AT1G79440 145 / 9e-38 ENF1, SSADH1, ALDH5F1 SUCCINIC SEMIALDEHYDE DEHYDROGENASE 1, SUCCINIC SEMIALDEHYDE DEHYDROGENASE, ENLARGED FIL EXPRESSION DOMAIN 1, aldehyde dehydrogenase 5F1 (.1) AT1G74920 142 / 8e-37 ALDH10A8 aldehyde dehydrogenase 10A8 (.1.2) AT3G48170 140 / 2e-36 ALDH10A9 aldehyde dehydrogenase 10A9 (.1) AT1G23800 124 / 3e-30 ALDH2B7 aldehyde dehydrogenase 2B7 (.1) AT3G48000 118 / 2e-28 ALDH2A, ALDH2B4 aldehyde dehydrogenase 2A, aldehyde dehydrogenase 2B4 (.1) AT2G24270 111 / 2e-26 ALDH11A3 aldehyde dehydrogenase 11A3 (.1.2.3.4)
Paralogs Show only best Show top 10	Gene ID BLAST score/e-value At best hit BLAST score/e-value TAIR10 short description Lus10031280 [exp] 925 / 0 AT4G36250 555 / 0.0 aldehyde dehydrogenase 3F1 (.1) Lus10002557 [exp] 816 / 0 AT3G12080 869 / 0.0 embryo defective 2738, GTP-binding family protein (.1.2) Lus10041806 [exp] 529 / 0 AT4G36250 640 / 0.0 aldehyde dehydrogenase 3F1 (.1) Lus10028357 [exp] 520 / 0 AT4G36250 635 / 0.0 aldehyde dehydrogenase 3F1 (.1) Lus10027372 [exp] 515 / 0 AT4G36250 351 / 4e-118 aldehyde dehydrogenase 3F1 (.1) Lus10029684 [exp] 467 / 1e-161 AT1G44170 742 / 0.0 aldehyde dehydrogenase 4, aldehyde dehydrogenase 3H1 (.1.2.3) Lus10018153 [exp] 447 / 4e-154 AT1G44170 734 / 0.0 aldehyde dehydrogenase 4, aldehyde dehydrogenase 3H1 (.1.2.3) Lus10025681 [exp] 446 / 2e-153 AT1G44170 743 / 0.0 aldehyde dehydrogenase 4, aldehyde dehydrogenase 3H1 (.1.2.3) Lus10015688 [exp] 444 / 3e-152 AT4G34240 674 / 0.0 aldehyde dehydrogenase 3I1 (.1.2)
Poplar homologues Show only best Show top 10	Locus ID BLAST score/e-value At best hit BLAST score/e-value TAIR10 short description Potri.001G259100 [exp] 768 / 0 AT4G36250 556 / 0.0 aldehyde dehydrogenase 3F1 (.1) Potri.007G017100 [exp] 568 / 0 AT4G36250 635 / 0.0 aldehyde dehydrogenase 3F1 (.1) Potri.002G081800 [exp] 472 / 1e-163 AT1G44170 731 / 0.0 aldehyde dehydrogenase 4, aldehyde dehydrogenase 3H1 (.1.2.3) Potri.005G179300 [exp] 465 / 5e-161 AT1G44170 736 / 0.0 aldehyde dehydrogenase 4, aldehyde dehydrogenase 3H1 (.1.2.3) Potri.001G412900 [exp] 466 / 9e-161 AT4G34240 678 / 0.0 aldehyde dehydrogenase 3I1 (.1.2) Potri.005G069800 [exp] 459 / 9e-158 AT4G34240 626 / 0.0 aldehyde dehydrogenase 3I1 (.1.2) Potri.008G106000 [exp] 161 / 2e-43 AT3G66658 1049 / 0.0 aldehyde dehydrogenase 22A1 (.1.2) Potri.012G075600 [exp] 144 / 1e-37 AT1G74920 861 / 0.0 aldehyde dehydrogenase 10A8 (.1.2) Potri.015G070600 [exp] 141 / 1e-36 AT1G74920 896 / 0.0 aldehyde dehydrogenase 10A8 (.1.2) Potri.010G174000 [exp] 139 / 1e-35 AT1G79440 810 / 0.0 SUCCINIC SEMIALDEHYDE DEHYDROGENASE 1, SUCCINIC SEMIALDEHYDE DEHYDROGENASE, ENLARGED FIL EXPRESSION DOMAIN 1, aldehyde dehydrogenase 5F1 (.1)
PFAM info	Clan ID Clan name Pfam ID Pfam name Pfam description CL0099 [flax] [poplar] ALDH-like PF00171 [flax] [poplar] Aldedh Aldehyde dehydrogenase family
Representative CDS sequence Show only first row Show all	>Lus10031849 pacid=23180798 polypeptide=Lus10031849 locus=Lus10031849.g ID=Lus10031849.BGIv1.0 annot-version=v1.0 ATGGAGAGTGATTTGGAGGAGATGAGGGATTACTTCAGAAGTGGGAAGACCAAAGATGGAGAGTGGAGAAAAGCTCAGCTCAAAGGGTTGCTAGCCTTCC TCAAGAGGAATGAGTCTGACATTTTCCAGGCTCTGATGCAGGACTTGGGTAAGCCTCAAGTTGAGGCCTACAGGGATGAGGTTGGGACATTGTTAAAGTC TGTGAATTTCGCTTTGAAAGGATTGAAAGGGTGGATGTCAAGTAAGAAGGCTAAGCTCCCAAGTATTGCTCTCTTGTCTTCTGCAGAGTTGGTTCCAGAG CCACTTGGACTTGTCCTCATTATTTCATCTTGGAACTTCCCTTTTGGACTGTCCTTGGAACCATTGATAGGAGCAATAGCAGCAGGGAACACCATGGTTT TGAAGCCTTCGGAACTTGCACCTGCATCTGCTTATGTCCTAGCTAATATCCTCACGAATTACCTTGATACTAAAGCTATCAGGATCGTCCAAGGAGGACC GGATGTCGGCGAACAACTGCTTCAGCAAAAATGGGACAAAATATTCTTCACTGGAAGTGCACGAGTAGGAAGGACTATCATGACTGCTGCAGTGAAACAT CTAACACCAGTTGTTCTTGAGCTGGGTGGAAAGTGTCCTGCAGTTCTTGATTCCTTGGCTTCATGGGAATTGAAGGTGGCTGTAAATCGAATAATTGGCT CGAAGTTTGGACCTTGTGCTGGTCAAGCCTGCATAGCAGTTGATTATATTCTGGTGGAGAAGAGACTAGCCTCTGCTGTGGTGGAGTTGATGAAAGTATT GGTCACGAAGATGTTTGGAGAGAACCCAAGAGATTCAGTTTCCATGACGAGAATAGTCAACAAGAAACACTTCTCAAGATTGAAGAGCCTTCTCACTGAT CCATTAGTCGAATCTTGTGTTGTTTACGGCGGATTCATGGATGAAGAACATCTATTCATTGAGCCAACTATTCTGGTAGATCCACCACTCGACTCCCCAA TCATGACTGAAGAAATCTTTGGCCCATTGCTCCCAATTATTACAGTGGAGAAGATCGAAGAAAGCATCAACTTCATAAACGCAAGGCCGAAGTCACTAGC CATATACGGCTTCACCAAGAACAAGTCATTCAGCAAAAGACTGCTCTCCGAGACATCATCAGGGAGCCTGGTGTTCAACGATGCAGTGATTCAGTATGCA GCAGATAGCTTGCCGTTCGGAGGTATCGGTGGGAGCGGGATGGGGAAGTACCACGGCAAGTTCTCTTTCGAGACGTTCAGCCATTACAAAGCGGTCGCGA GGCGAAGCTACCTGACCGATTTCTGGTTCAGGTTTCCTCCATGGAACAATCACAAGTTGTTGCTGTTTGAAGCTAGCTATCACCTTGATTACCTCAGATT GGTACTGGTAATTCTTGGCATGAAGAAGTCTAGATATGGATCCTAA
AA sequence Show only first row Show all	>Lus10031849 pacid=23180798 polypeptide=Lus10031849 locus=Lus10031849.g ID=Lus10031849.BGIv1.0 annot-version=v1.0 MESDLEEMRDYFRSGKTKDGEWRKAQLKGLLAFLKRNESDIFQALMQDLGKPQVEAYRDEVGTLLKSVNFALKGLKGWMSSKKAKLPSIALLSSAELVPE PLGLVLIISSWNFPFGLSLEPLIGAIAAGNTMVLKPSELAPASAYVLANILTNYLDTKAIRIVQGGPDVGEQLLQQKWDKIFFTGSARVGRTIMTAAVKH LTPVVLELGGKCPAVLDSLASWELKVAVNRIIGSKFGPCAGQACIAVDYILVEKRLASAVVELMKVLVTKMFGENPRDSVSMTRIVNKKHFSRLKSLLTD PLVESCVVYGGFMDEEHLFIEPTILVDPPLDSPIMTEEIFGPLLPIITVEKIEESINFINARPKSLAIYGFTKNKSFSKRLLSETSSGSLVFNDAVIQYA ADSLPFGGIGGSGMGKYHGKFSFETFSHYKAVARRSYLTDFWFRFPPWNNHKLLLFEASYHLDYLRLVLVILGMKKSRYGS

---

DESeq2's median of ratios [FLAX]

Order by: Tissue Experiment Show only core collection Show again Show schematic diagram

---

Coexpressed genes

Compare expression of checked genes Schematic diagram [FLAX] Schematic diagram [POPLAR]

*If you select 4 or less genes and then press "compare expression", expression will be shown as a graph. If you select more than 4 genes, expresion will be shown as a heat map.
*Color represents relative expression level among samples for each gene.

At best	At TF class	At alias	At description		Locus	MR	r	Symbol	HYP	R_s2_CTR	R_s2_Fox	R_s4_CTR	R_s4_Fox	R_r1_CTR	R_r1_Fox	R_r3_CTR	R_r3_Fox	R_r1s2_CTR	R_r1s2_Fox	R_r3s2_CTR	R_r3s2_Fox	R_s6_CTR	R_s6_Al4	R_s6_Al12	R_s6_Al24	R_s8_CTR	R_s8_Al4	R_s8_Al12	R_s8_Al24	R_r5_CTR	R_r5_Al4	R_r5_Al12	R_r5_Al24	R_r7_CTR	R_r7_Al4	R_r7_Al12	R_r7_Al24	LEAF_N	LEAF_P	LEAF_NPK	SAM	AR_Bet	AR_rdf	cPAR	TOP_Bet	TOP_rdf	iFIBa	iFIBb	MID_Bet	MID_rdf	tFIBa	tFIB_Gr	tFIB_Li	tFIB_Bi	tFIBb	tFIBb_PUL8	tFIBb_PUL24	tFIBb_PUL96	tFIBb_OPP8	tFIBb_OPP24	tFIBb_OPP96	sXYLa	sXYLb	sXYLb_PUL8	sXYLb_PUL24	sXYLb_PUL96	sXYLb_OPP8	sXYLb_OPP24	sXYLb_OPP96
AT4G36250		ALDH3F1	aldehyde dehydrogenase 3F1 (.1...		Lus10031849 [exp]	0	1
AT4G10310		ATHKT1, HKT1	high-affinity K+ transporter 1...		Lus10026948 [exp]	1.4	0.8622
AT3G61940		ATMTPA1, MTPA1	Cation efflux family protein (...		Lus10012604 [exp]	5.0	0.8099
AT3G18440		ATALMT9	aluminum-activated malate tran...		Lus10024711 [exp]	6.7	0.7851
AT5G02070			Protein kinase family protein ...		Lus10014387 [exp]	14.8	0.8293
AT3G18440		ATALMT9	aluminum-activated malate tran...		Lus10024710 [exp]	17.5	0.7886
AT1G63300			Myosin heavy chain-related pro...		Lus10038860 [exp]	19.9	0.7760
AT5G03810			GDSL-like Lipase/Acylhydrolase...		Lus10035585 [exp]	23.5	0.7875
AT1G69970		CLE26	CLAVATA3/ESR-RELATED 26 (.1.2)		Lus10010735 [exp]	27.2	0.8170
AT1G13970			Protein of unknown function (D...		Lus10036799 [exp]	28.0	0.7854
AT4G14750		IQD19	IQ-domain 19 (.1)		Lus10006613 [exp]	30.6	0.7804

Compare expression of checked genes

Lus10031849 coexpression network

*The number of genes in the network is adjusted within 50 genes.
*Gene name represents symbol(s) of closest Arabidopsis gene if symbol(s) for the gene itself doesn't exist.
*Circle diameter represents the number of connection with other genes within this network.
*Color for gene name represents subnetwork based on the result of network clustering.