Plant FIBer expression Database

External link	JGI Phytozome v13 [genome browser]
Symbol
Arabidopsis homologues Show only best Show top 10	Locus ID BLAST score/e-value TF class Alias TAIR10 short description AT5G58510 107 / 1e-26 unknown protein AT4G33355 61 / 3e-12 Bifunctional inhibitor/lipid-transfer protein/seed storage 2S albumin superfamily protein (.1.2) AT5G59310 59 / 3e-11 LTP4 lipid transfer protein 4 (.1) AT2G18370 58 / 7e-11 Bifunctional inhibitor/lipid-transfer protein/seed storage 2S albumin superfamily protein (.1) AT5G59320 52 / 1e-08 LTP3 lipid transfer protein 3 (.1) AT3G08770 51 / 2e-08 LTP6 lipid transfer protein 6 (.1.2) AT2G38540 50 / 3e-08 ATLTP1, LP1 ARABIDOPSIS THALIANA LIPID TRANSFER PROTEIN 1, lipid transfer protein 1 (.1) AT2G38530 50 / 6e-08 cdf3, LP2, LTP2 cell growth defect factor-3, lipid transfer protein 2 (.1) AT3G51590 49 / 2e-07 LTP12 lipid transfer protein 12 (.1) AT2G15050 47 / 5e-07 LTP7, LTP lipid transfer protein 7, lipid transfer protein (.1.2.3)
Paralogs Show only best Show top 10	Gene ID BLAST score/e-value At best hit BLAST score/e-value TAIR10 short description Lus10031287 [exp] 197 / 3e-58 AT5G58510 1122 / 0.0 unknown protein Lus10039270 [exp] 169 / 3e-54 AT5G59310 69 / 4e-16 lipid transfer protein 4 (.1) Lus10042512 [exp] 167 / 1e-53 AT2G18370 64 / 2e-14 Bifunctional inhibitor/lipid-transfer protein/seed storage 2S albumin superfamily protein (.1) Lus10031282 [exp] 166 / 4e-53 AT4G33355 56 / 1e-11 Bifunctional inhibitor/lipid-transfer protein/seed storage 2S albumin superfamily protein (.1.2) Lus10032716 [exp] 87 / 2e-22 AT4G33355 42 / 2e-06 Bifunctional inhibitor/lipid-transfer protein/seed storage 2S albumin superfamily protein (.1.2) Lus10009630 [exp] 84 / 2e-20 AT3G51590 59 / 5e-12 lipid transfer protein 12 (.1) Lus10009003 [exp] 83 / 2e-20 AT3G51590 59 / 5e-12 lipid transfer protein 12 (.1) Lus10026418 [exp] 67 / 2e-14 AT5G59320 115 / 2e-34 lipid transfer protein 3 (.1) Lus10025234 [exp] 66 / 9e-14 AT2G38530 118 / 2e-35 cell growth defect factor-3, lipid transfer protein 2 (.1)
Poplar homologues Show only best Show top 10	Locus ID BLAST score/e-value At best hit BLAST score/e-value TAIR10 short description Potri.009G076000 [exp] 135 / 2e-36 AT5G58510 1237 / 0.0 unknown protein Potri.001G232700 [exp] 64 / 5e-13 AT2G18370 93 / 1e-25 Bifunctional inhibitor/lipid-transfer protein/seed storage 2S albumin superfamily protein (.1) Potri.001G232900 [exp] 62 / 3e-12 AT2G18370 100 / 3e-28 Bifunctional inhibitor/lipid-transfer protein/seed storage 2S albumin superfamily protein (.1) Potri.014G046500 [exp] 61 / 5e-12 AT4G33355 76 / 6e-19 Bifunctional inhibitor/lipid-transfer protein/seed storage 2S albumin superfamily protein (.1.2) Potri.016G135700 [exp] 60 / 2e-11 AT5G59310 92 / 3e-25 lipid transfer protein 4 (.1) Potri.016G135500 [exp] 57 / 2e-10 AT5G59320 94 / 8e-26 lipid transfer protein 3 (.1) Potri.006G108100 [exp] 55 / 8e-10 AT2G38540 121 / 6e-37 ARABIDOPSIS THALIANA LIPID TRANSFER PROTEIN 1, lipid transfer protein 1 (.1) Potri.016G135400 [exp] 53 / 5e-09 AT5G59320 109 / 3e-32 lipid transfer protein 3 (.1) Potri.011G021900 [exp] 50 / 4e-08 AT3G08770 60 / 8e-13 lipid transfer protein 6 (.1.2) Potri.009G025200 [exp] 49 / 1e-07 AT2G18370 86 / 6e-23 Bifunctional inhibitor/lipid-transfer protein/seed storage 2S albumin superfamily protein (.1)
PFAM info	Clan ID Clan name Pfam ID Pfam name Pfam description CL0482 [flax] [poplar] Prolamin PF00234 [flax] [poplar] Tryp_alpha_amyl Protease inhibitor/seed storage/LTP family
Representative CDS sequence Show only first row Show all	>Lus10031851 pacid=23180734 polypeptide=Lus10031851 locus=Lus10031851.g ID=Lus10031851.BGIv1.0 annot-version=v1.0 ATGACTTCCATTACTTGTAACACGGTAGACGACGATGCACGCCCTTGTTTACCATATGCAACAGGGAAAAGCAACTCGGTATCACCCGACTGTTGTTCCG GCCTCAATAATCTAATTGCAAGTACATCCACTATTGGCGATAAGAAGATAGCTTGCAATTGTCTTGCCACCGCTTTCAAGATCTTCCCGGTACAGGATGA CTTATTGAAAAACATTCCAGACTTGTGCAAACTTCAAGTTCCTTTCAACATGTCCACCACCGTCAGTTGCGACAAGTTTATATCGGAGATAGAAGCAGTT TGTCGGAAGTGGATCGCTGATGATCTCAAATCCAAAGTTCTGCTAACGATCTCTGTCCTTTGGATAGAGTTTATTCGAGAAGTTCGGTGGTGTTGGGAAG AATCGCAGCCTTTGCCTAAAGTTCAAGTAAATGGTTCAATTGACCTGGCAACCTGTTTGATTAATCAGAAACTGCAAATGCTTGCCATTTGCATTGAGAG GAGGGTTGACTTAAACGATGATTTCCAAGACTGCGAGGGAAGTAATGATCAAACTGATACTCATAAGAAGGAAGATGGTCAACTAAGGAATGATGCAGCT ACCTCAAAAGTACCCCGTGTACAGTCCGACAGAAGTCATGACAGGTGA
AA sequence Show only first row Show all	>Lus10031851 pacid=23180734 polypeptide=Lus10031851 locus=Lus10031851.g ID=Lus10031851.BGIv1.0 annot-version=v1.0 MTSITCNTVDDDARPCLPYATGKSNSVSPDCCSGLNNLIASTSTIGDKKIACNCLATAFKIFPVQDDLLKNIPDLCKLQVPFNMSTTVSCDKFISEIEAV CRKWIADDLKSKVLLTISVLWIEFIREVRWCWEESQPLPKVQVNGSIDLATCLINQKLQMLAICIERRVDLNDDFQDCEGSNDQTDTHKKEDGQLRNDAA TSKVPRVQSDRSHDR

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DESeq2's median of ratios [FLAX]

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Coexpressed genes

Compare expression of checked genes Schematic diagram [FLAX] Schematic diagram [POPLAR]

*If you select 4 or less genes and then press "compare expression", expression will be shown as a graph. If you select more than 4 genes, expresion will be shown as a heat map.
*Color represents relative expression level among samples for each gene.

At best	At TF class	At alias	At description		Locus	MR	r	Symbol	HYP	R_s2_CTR	R_s2_Fox	R_s4_CTR	R_s4_Fox	R_r1_CTR	R_r1_Fox	R_r3_CTR	R_r3_Fox	R_r1s2_CTR	R_r1s2_Fox	R_r3s2_CTR	R_r3s2_Fox	R_s6_CTR	R_s6_Al4	R_s6_Al12	R_s6_Al24	R_s8_CTR	R_s8_Al4	R_s8_Al12	R_s8_Al24	R_r5_CTR	R_r5_Al4	R_r5_Al12	R_r5_Al24	R_r7_CTR	R_r7_Al4	R_r7_Al12	R_r7_Al24	LEAF_N	LEAF_P	LEAF_NPK	SAM	AR_Bet	AR_rdf	cPAR	TOP_Bet	TOP_rdf	iFIBa	iFIBb	MID_Bet	MID_rdf	tFIBa	tFIB_Gr	tFIB_Li	tFIB_Bi	tFIBb	tFIBb_PUL8	tFIBb_PUL24	tFIBb_PUL96	tFIBb_OPP8	tFIBb_OPP24	tFIBb_OPP96	sXYLa	sXYLb	sXYLb_PUL8	sXYLb_PUL24	sXYLb_PUL96	sXYLb_OPP8	sXYLb_OPP24	sXYLb_OPP96
AT5G58510			unknown protein		Lus10031851 [exp]	0	1
AT2G27830			unknown protein		Lus10015082 [exp]	6.6	0.7088
AT4G15840			BTB/POZ domain-containing prot...		Lus10002873 [exp]	12.2	0.7924
AT1G58250		SAB	SABRE, Golgi-body localisation...		Lus10002603 [exp]	13.1	0.8042
AT2G35160		SGD9, SUVH5	SET DOMAIN-CONTAINING PROTEIN ...		Lus10011011 [exp]	16.2	0.7584
					Lus10019222 [exp]	21.5	0.6857
AT4G32180		ATPANK2	pantothenate kinase 2 (.1.2.3)		Lus10020341 [exp]	28.0	0.7036
AT2G05590			TLD-domain containing nucleola...		Lus10014476 [exp]	29.2	0.7417
AT1G67960		POD1	POLLEN DEFECTIVE IN GUIDANCE 1...		Lus10033013 [exp]	31.3	0.7570
AT4G39420			unknown protein		Lus10014010 [exp]	32.4	0.7582
AT1G65580		FRA3	FRAGILE FIBER3, Endonuclease/e...		Lus10041607 [exp]	43.8	0.7249

Compare expression of checked genes

Lus10031851 coexpression network

*The number of genes in the network is adjusted within 50 genes.
*Gene name represents symbol(s) of closest Arabidopsis gene if symbol(s) for the gene itself doesn't exist.
*Circle diameter represents the number of connection with other genes within this network.
*Color for gene name represents subnetwork based on the result of network clustering.