Plant FIBer expression Database

External link	JGI Phytozome v13 [genome browser]
Symbol
Arabidopsis homologues Show only best Show top 10	Locus ID BLAST score/e-value TF class Alias TAIR10 short description AT5G37060 564 / 0 ATCHX24 cation/H+ exchanger 24, ARABIDOPSIS THALIANA CATION/H+ EXCHANGER 24, cation/H+ exchanger 24 (.1) AT5G58460 527 / 7e-177 ATCHX25 cation/H+ exchanger 25, ARABIDOPSIS THALIANA CATION/H+ EXCHANGER 25, cation/H+ exchanger 25 (.1) AT2G13620 343 / 1e-106 ATCHX15 CATION/H+ EXCHANGER 15, cation/hydrogen exchanger 15 (.1) AT5G22900 295 / 9e-89 ATCHX3 cation/H+ exchanger 3, ARABIDOPSIS THALIANA CATION/H+ EXCHANGER 3, cation/H+ exchanger 3 (.1) AT3G44900 285 / 7e-85 ATCHX4 cation/H+ exchanger 4, cation/H+ exchanger 4, cation/H+ exchanger 4 (.1) AT1G06970 279 / 1e-82 ATCHX14, CHX14 cation/hydrogen exchanger 14 (.1) AT2G30240 259 / 2e-75 ATCHX13 CATION/H+ EXCHANGER 13, Cation/hydrogen exchanger family protein (.1) AT2G31910 258 / 7e-75 ATCHX21 cation/H+ exchanger 21, cation/H+ exchanger 21, cation/H+ exchanger 21 (.1) AT1G08150 257 / 1e-74 ATCHX5 CATION/H+ EXCHANGER 5, Cation/hydrogen exchanger family protein (.1) AT2G28180 257 / 2e-74 CHX08, ATCHX8 CATION/H+ EXCHANGER 8, Cation/hydrogen exchanger family protein (.1)
Paralogs Show only best Show top 10	Gene ID BLAST score/e-value At best hit BLAST score/e-value TAIR10 short description Lus10031283 [exp] 1302 / 0 AT5G37060 672 / 0.0 cation/H+ exchanger 24, ARABIDOPSIS THALIANA CATION/H+ EXCHANGER 24, cation/H+ exchanger 24 (.1) Lus10042254 [exp] 1039 / 0 AT5G37060 659 / 0.0 cation/H+ exchanger 24, ARABIDOPSIS THALIANA CATION/H+ EXCHANGER 24, cation/H+ exchanger 24 (.1) Lus10026398 [exp] 1026 / 0 AT5G37060 649 / 0.0 cation/H+ exchanger 24, ARABIDOPSIS THALIANA CATION/H+ EXCHANGER 24, cation/H+ exchanger 24 (.1) Lus10030013 [exp] 332 / 4e-102 AT2G13620 1160 / 0.0 CATION/H+ EXCHANGER 15, cation/hydrogen exchanger 15 (.1) Lus10035312 [exp] 323 / 2e-98 AT2G13620 1160 / 0.0 CATION/H+ EXCHANGER 15, cation/hydrogen exchanger 15 (.1) Lus10026408 [exp] 275 / 8e-81 AT2G13620 441 / 2e-142 CATION/H+ EXCHANGER 15, cation/hydrogen exchanger 15 (.1) Lus10043128 [exp] 273 / 1e-80 AT3G44900 540 / 0.0 cation/H+ exchanger 4, cation/H+ exchanger 4, cation/H+ exchanger 4 (.1) Lus10013423 [exp] 272 / 5e-80 AT3G44900 375 / 2e-117 cation/H+ exchanger 4, cation/H+ exchanger 4, cation/H+ exchanger 4 (.1) Lus10040963 [exp] 270 / 4e-79 AT3G44900 376 / 2e-117 cation/H+ exchanger 4, cation/H+ exchanger 4, cation/H+ exchanger 4 (.1)
Poplar homologues Show only best Show top 10	Locus ID BLAST score/e-value At best hit BLAST score/e-value TAIR10 short description Potri.001G282800 [exp] 639 / 0 AT5G37060 604 / 0.0 cation/H+ exchanger 24, ARABIDOPSIS THALIANA CATION/H+ EXCHANGER 24, cation/H+ exchanger 24 (.1) Potri.009G078000 [exp] 579 / 0 AT5G37060 677 / 0.0 cation/H+ exchanger 24, ARABIDOPSIS THALIANA CATION/H+ EXCHANGER 24, cation/H+ exchanger 24 (.1) Potri.019G123700 [exp] 343 / 2e-106 AT2G13620 536 / 4e-179 CATION/H+ EXCHANGER 15, cation/hydrogen exchanger 15 (.1) Potri.007G105200 [exp] 338 / 6e-105 AT2G13620 1112 / 0.0 CATION/H+ EXCHANGER 15, cation/hydrogen exchanger 15 (.1) Potri.019G123800 [exp] 291 / 2e-87 AT2G13620 443 / 5e-144 CATION/H+ EXCHANGER 15, cation/hydrogen exchanger 15 (.1) Potri.016G127800 [exp] 283 / 2e-84 AT5G01680 436 / 6e-142 cation/H+ exchanger 26, ARABIDOPSIS THALIANA CATION/HYDROGEN EXCHANGER 26, cation/H+ exchanger 26 (.1) Potri.010G183000 [exp] 268 / 8e-79 AT2G13620 474 / 8e-156 CATION/H+ EXCHANGER 15, cation/hydrogen exchanger 15 (.1) Potri.007G111400 [exp] 263 / 2e-76 AT1G05580 645 / 0.0 cation/H+ exchanger 23, cation/H+ exchanger 23, cation/H+ exchanger 23 (.1), cation/H+ exchanger 23 (.2) Potri.018G098300 [exp] 261 / 3e-76 AT5G22900 470 / 3e-154 cation/H+ exchanger 3, ARABIDOPSIS THALIANA CATION/H+ EXCHANGER 3, cation/H+ exchanger 3 (.1) Potri.013G153200 [exp] 259 / 2e-75 AT2G13620 427 / 2e-137 CATION/H+ EXCHANGER 15, cation/hydrogen exchanger 15 (.1)
PFAM info	Clan ID Clan name Pfam ID Pfam name Pfam description CL0064 [flax] [poplar] CPA_AT PF00999 [flax] [poplar] Na_H_Exchanger Sodium/hydrogen exchanger family
Representative CDS sequence Show only first row Show all	>Lus10031852 pacid=23180591 polypeptide=Lus10031852 locus=Lus10031852.g ID=Lus10031852.BGIv1.0 annot-version=v1.0 ATGCCGACAACGGTTCAATTTGTGATAAAAAACCTAGGGCTCATGGGCTTCATGTTCTTCCTTTTCCTGAGTGGAGTGAAGATGGACCTCTCGGTCATTA AAAGCTCAGAGAAGAAAGACTGGTTTGTCACCCTAATAGGGATGACAATCCCTATTGTACTACTTACTGCAGTGGCGATCTCCGTTCGTCCGTCGATGGA TCCCGAGCTTGCTAAGGTATCCTCCATCGGTGCGATCATCGGCTTGTTGTCTCTCTCGGGTTTCTACGTCATCCACCCGATCCTCCAAGAGATGAACTTG TTGAGCTCTGAGGTAGGGCGCATAGCCCTCTCCACATCGATAATCGCGGACATGTTTGGACTTTCTTTCATGATTATTTTCGAGGTCTTGCGACACGCTG AGTACAGCTATCAAGCCGCAATATGGTACAATATATCGGTGCTGGTTCTGGTTTTGTTTATGAGCATCACCGTGCGAACGCTGGTGAGGTGGATCATCAA CAACCATCCGATCGGGACCCCAATCGAACAAATGTATGTAGTGGGGTTGGTGCTTGGCTCCATGGTGGTAGGGTTTCTGAGTGACATGTTCGGGATTGGG ATAGCCAATGGTTCCTTCTGGCTAGGGCTCGTGATCCCTGACGGTCCACCGTTGGGTTCGACCATTGTGGAGAAGAGCGAGACCTTCATATTGCACCTCT TCATGCCCTTCTCTTACATCTTTCTTGGGATGCTCGTTGATGTGTTTTCTATGTTCAGCGTCCCGTGGTCGACCCTTTCGCCGCTTTTTGCGATTGCTAT GACTGGTTTCGTGGGGAGGATCTTCGCGAACATCATCGCATCTCTGGTGCTCGAGATGTCGATTAAAGAGCAGATCAGTTTGAGCCTCATGCTTAGCTTG AGAGGCCAGATGGAGTTCATCATCATGGTGCATTGGCTAGACAAAGGGATAATAGGAGTTCCATCATTCACGATGCTAGTGCTGATGACGGTGGTCGCGA CATTCATCGTGACCCCGATTTTTCGAGCCCTGTACGACCCATCGAAGCCGTACATGATAAGCAAATGGAGGACCATCCAGCATCACCCTCCGAACACGGA CCTAAAGCTTCTCCTTTGTGTCAACGACCACGAAACCCTAGCTGGACTCGTGAACCTCCTCGAGTTCACTTTCCCGACCCAGTCCAGCCCGTTCACCATC TACGGGATCCACATTATCGAGATGATCGGTCGCGCTGCCCCGATATTCGTGGACCATGAACACCAACGCCTCACAACCAAATACGCGAGCTCGATGTCCA TCCACAACTCCCTCAAGTTATACCAAGAATCTAAAGAGGCCAACCTCGTCAAGCTCCACTCGTTCACGGCCGTGGTCCCCAAGAGGACCATGTACCAGGA CGTGTGCGAGCTGGCCTTAACCAAGAAGGCCACCCTCATAATCATCCCTTTCCACGGGATGTGGACCGGGCCCATCCCTGACCCGCGATCCCAAACCCTA ACCACGACCGCCCTAACCAAAACCCTGGACCACGCGCCCTGCTCCATCGCGGTGCTGGTCCAAAAGGGGGAGTTTCAGAACCCGATGTTCGCGGTCTCCG ACGCTTACACCATCCACCCTTTCATCATGATCTTCATGGGCGGGTCCGACGCCAGAGAGGCCCTGTCCTACGCGGACCGGATGATGGCGAACCCTTACGT GACCATGACCGTGATCCGGTTCCTCGCGGTGAACGGCCGCGGGGACGACGAGATGGAGAGGAAGCTCGACGAAGGGGTGCTCCAGTGGTTCATGGCCAGG AACGAGAACACGAACCGGATCACATACCAAGAGATCGAGGTGAACAACGGCGAGGAGACATTGGCATCCATCAATGCCCTCAAGAATGTGATGAACTATG AGGTGTGGATATTGGGGAGGGAGATTGGGATCAATCCTGTGTTGTTGGAAGGTTTGACTGGTTGGAGCAATCATGAAGAACTGGGAGTGATTGGAGACTA TGTGTCTTCTAGTGATTTTGGGACACAATCATCTGTGTTAGTTATCCAACAACAAATCCTAAGAGGAAATAAACCTAAGAGGCCTAGACTTAGAAGCTTC TCTCTTAACAATTACTTTTAG
AA sequence Show only first row Show all	>Lus10031852 pacid=23180591 polypeptide=Lus10031852 locus=Lus10031852.g ID=Lus10031852.BGIv1.0 annot-version=v1.0 MPTTVQFVIKNLGLMGFMFFLFLSGVKMDLSVIKSSEKKDWFVTLIGMTIPIVLLTAVAISVRPSMDPELAKVSSIGAIIGLLSLSGFYVIHPILQEMNL LSSEVGRIALSTSIIADMFGLSFMIIFEVLRHAEYSYQAAIWYNISVLVLVLFMSITVRTLVRWIINNHPIGTPIEQMYVVGLVLGSMVVGFLSDMFGIG IANGSFWLGLVIPDGPPLGSTIVEKSETFILHLFMPFSYIFLGMLVDVFSMFSVPWSTLSPLFAIAMTGFVGRIFANIIASLVLEMSIKEQISLSLMLSL RGQMEFIIMVHWLDKGIIGVPSFTMLVLMTVVATFIVTPIFRALYDPSKPYMISKWRTIQHHPPNTDLKLLLCVNDHETLAGLVNLLEFTFPTQSSPFTI YGIHIIEMIGRAAPIFVDHEHQRLTTKYASSMSIHNSLKLYQESKEANLVKLHSFTAVVPKRTMYQDVCELALTKKATLIIIPFHGMWTGPIPDPRSQTL TTTALTKTLDHAPCSIAVLVQKGEFQNPMFAVSDAYTIHPFIMIFMGGSDAREALSYADRMMANPYVTMTVIRFLAVNGRGDDEMERKLDEGVLQWFMAR NENTNRITYQEIEVNNGEETLASINALKNVMNYEVWILGREIGINPVLLEGLTGWSNHEELGVIGDYVSSSDFGTQSSVLVIQQQILRGNKPKRPRLRSF SLNNYF

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DESeq2's median of ratios [FLAX]

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Coexpressed genes

Compare expression of checked genes Schematic diagram [FLAX] Schematic diagram [POPLAR]

*If you select 4 or less genes and then press "compare expression", expression will be shown as a graph. If you select more than 4 genes, expresion will be shown as a heat map.
*Color represents relative expression level among samples for each gene.

At best	At TF class	At alias	At description		Locus	MR	r	Symbol	HYP	R_s2_CTR	R_s2_Fox	R_s4_CTR	R_s4_Fox	R_r1_CTR	R_r1_Fox	R_r3_CTR	R_r3_Fox	R_r1s2_CTR	R_r1s2_Fox	R_r3s2_CTR	R_r3s2_Fox	R_s6_CTR	R_s6_Al4	R_s6_Al12	R_s6_Al24	R_s8_CTR	R_s8_Al4	R_s8_Al12	R_s8_Al24	R_r5_CTR	R_r5_Al4	R_r5_Al12	R_r5_Al24	R_r7_CTR	R_r7_Al4	R_r7_Al12	R_r7_Al24	LEAF_N	LEAF_P	LEAF_NPK	SAM	AR_Bet	AR_rdf	cPAR	TOP_Bet	TOP_rdf	iFIBa	iFIBb	MID_Bet	MID_rdf	tFIBa	tFIB_Gr	tFIB_Li	tFIB_Bi	tFIBb	tFIBb_PUL8	tFIBb_PUL24	tFIBb_PUL96	tFIBb_OPP8	tFIBb_OPP24	tFIBb_OPP96	sXYLa	sXYLb	sXYLb_PUL8	sXYLb_PUL24	sXYLb_PUL96	sXYLb_OPP8	sXYLb_OPP24	sXYLb_OPP96
AT5G37060		ATCHX24	cation/H+ exchanger 24, ARABID...		Lus10031852 [exp]	0	1
AT1G65450			HXXXD-type acyl-transferase fa...		Lus10029920 [exp]	1.4	0.9902
AT5G11730			Core-2/I-branching beta-1,6-N-...		Lus10034348 [exp]	2.0	0.9902
AT5G45670			GDSL-like Lipase/Acylhydrolase...		Lus10011999 [exp]	3.0	0.9753
AT2G40190		LEW3	LEAF WILTING 3, UDP-Glycosyltr...		Lus10007909 [exp]	3.5	0.9718
					Lus10011637 [exp]	3.9	0.9704
AT1G77980	MADS	AGL66	AGAMOUS-like 66 (.1)		Lus10018493 [exp]	4.0	0.9205
					Lus10042238 [exp]	4.2	0.9002
AT1G52190			Major facilitator superfamily ...		Lus10008539 [exp]	4.9	0.9589
AT4G16295		SPH1	S-protein homologue 1 (.1)		Lus10029377 [exp]	4.9	0.9673
AT4G02340			alpha/beta-Hydrolases superfam...		Lus10008682 [exp]	5.3	0.9633

Compare expression of checked genes

Lus10031852 coexpression network

*The number of genes in the network is adjusted within 50 genes.
*Gene name represents symbol(s) of closest Arabidopsis gene if symbol(s) for the gene itself doesn't exist.
*Circle diameter represents the number of connection with other genes within this network.
*Color for gene name represents subnetwork based on the result of network clustering.