Plant FIBer expression Database

External link	JGI Phytozome v13 [genome browser]
Symbol
Arabidopsis homologues Show only best Show top 10	Locus ID BLAST score/e-value TF class Alias TAIR10 short description AT1G07010 88 / 4e-22 AtSLP1 Shewenella-like protein phosphatase 1, Calcineurin-like metallo-phosphoesterase superfamily protein (.1.2.3) AT1G18480 54 / 8e-10 AtSLP2 Shewenella-like protein phosphatase 2, Calcineurin-like metallo-phosphoesterase superfamily protein (.1)
Paralogs Show only best Show top 10	Gene ID BLAST score/e-value At best hit BLAST score/e-value TAIR10 short description Lus10031284 [exp] 154 / 7e-47 AT1G07010 467 / 2e-164 Shewenella-like protein phosphatase 1, Calcineurin-like metallo-phosphoesterase superfamily protein (.1.2.3) Lus10014985 [exp] 53 / 1e-09 AT1G18480 492 / 1e-174 Shewenella-like protein phosphatase 2, Calcineurin-like metallo-phosphoesterase superfamily protein (.1) Lus10038865 [exp] 52 / 4e-09 AT1G18480 496 / 5e-176 Shewenella-like protein phosphatase 2, Calcineurin-like metallo-phosphoesterase superfamily protein (.1)
Poplar homologues Show only best Show top 10	Locus ID BLAST score/e-value At best hit BLAST score/e-value TAIR10 short description Potri.009G077900 [exp] 95 / 1e-24 AT1G07010 538 / 0.0 Shewenella-like protein phosphatase 1, Calcineurin-like metallo-phosphoesterase superfamily protein (.1.2.3) Potri.013G127500 [exp] 54 / 7e-10 AT1G18480 538 / 0.0 Shewenella-like protein phosphatase 2, Calcineurin-like metallo-phosphoesterase superfamily protein (.1)
PFAM info
Representative CDS sequence Show only first row Show all	>Lus10031853 pacid=23180769 polypeptide=Lus10031853 locus=Lus10031853.g ID=Lus10031853.BGIv1.0 annot-version=v1.0 ATGAGTAATGACTTCGGTTTCCAGATACAAGCGGCTCTAGATGACACTTTGAGATCGCTTGATGCAAAGGGAATGGTGGTTGGACATACCCCTCAACCTA GAGGAGCAAACGGTGAATGTAATGGCCGGATATGGAGAGTTGATGTGGGGATGTCTAAAGGAGTGTTCAACTCAAGACCTGAGGTTCTGGAAACCAACGA GAGCAAGACGAGAGTCTTGAGATTGGGAAGGGATACCATTGGTGAATCTGAGGCTGTCAGGTACTTGTGA
AA sequence Show only first row Show all	>Lus10031853 pacid=23180769 polypeptide=Lus10031853 locus=Lus10031853.g ID=Lus10031853.BGIv1.0 annot-version=v1.0 MSNDFGFQIQAALDDTLRSLDAKGMVVGHTPQPRGANGECNGRIWRVDVGMSKGVFNSRPEVLETNESKTRVLRLGRDTIGESEAVRYL

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DESeq2's median of ratios [FLAX]

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Coexpressed genes

Compare expression of checked genes Schematic diagram [FLAX] Schematic diagram [POPLAR]

*If you select 4 or less genes and then press "compare expression", expression will be shown as a graph. If you select more than 4 genes, expresion will be shown as a heat map.
*Color represents relative expression level among samples for each gene.

At best	At TF class	At alias	At description		Locus	MR	r	Symbol	HYP	R_s2_CTR	R_s2_Fox	R_s4_CTR	R_s4_Fox	R_r1_CTR	R_r1_Fox	R_r3_CTR	R_r3_Fox	R_r1s2_CTR	R_r1s2_Fox	R_r3s2_CTR	R_r3s2_Fox	R_s6_CTR	R_s6_Al4	R_s6_Al12	R_s6_Al24	R_s8_CTR	R_s8_Al4	R_s8_Al12	R_s8_Al24	R_r5_CTR	R_r5_Al4	R_r5_Al12	R_r5_Al24	R_r7_CTR	R_r7_Al4	R_r7_Al12	R_r7_Al24	LEAF_N	LEAF_P	LEAF_NPK	SAM	AR_Bet	AR_rdf	cPAR	TOP_Bet	TOP_rdf	iFIBa	iFIBb	MID_Bet	MID_rdf	tFIBa	tFIB_Gr	tFIB_Li	tFIB_Bi	tFIBb	tFIBb_PUL8	tFIBb_PUL24	tFIBb_PUL96	tFIBb_OPP8	tFIBb_OPP24	tFIBb_OPP96	sXYLa	sXYLb	sXYLb_PUL8	sXYLb_PUL24	sXYLb_PUL96	sXYLb_OPP8	sXYLb_OPP24	sXYLb_OPP96
AT1G07010		AtSLP1	Shewenella-like protein phosph...		Lus10031853 [exp]	0	1
AT1G07010		AtSLP1	Shewenella-like protein phosph...		Lus10031854 [exp]	1.0	0.9216
AT1G68090		ANN5, ANNAT5	ANNEXIN ARABIDOPSIS THALIANA 5...		Lus10040415 [exp]	15.3	0.8313
AT4G24972		TPD1	tapetum determinant 1 (.1)		Lus10016744 [exp]	16.3	0.7804
AT1G65230			Uncharacterized conserved prot...		Lus10027002 [exp]	19.3	0.8388
AT5G01750			Protein of unknown function (D...		Lus10025254 [exp]	22.7	0.8101
AT1G61600			Protein of unknown function (D...		Lus10031916 [exp]	24.7	0.8191
AT1G14040			EXS (ERD1/XPR1/SYG1) family pr...		Lus10036779 [exp]	29.1	0.7815
AT3G04890			Uncharacterized conserved prot...		Lus10015938 [exp]	29.8	0.7944
AT5G04220		SYT3, NTMCTYPE1...	synaptotagmin 3, Calcium-depen...		Lus10023529 [exp]	33.9	0.7483
AT2G45080		CYCP3;1	cyclin p3;1 (.1)		Lus10028174 [exp]	38.7	0.7826

Compare expression of checked genes

Lus10031853 coexpression network

*The number of genes in the network is adjusted within 50 genes.
*Gene name represents symbol(s) of closest Arabidopsis gene if symbol(s) for the gene itself doesn't exist.
*Circle diameter represents the number of connection with other genes within this network.
*Color for gene name represents subnetwork based on the result of network clustering.