Plant FIBer expression Database

External link	JGI Phytozome v13 [genome browser]
Symbol
Arabidopsis homologues Show only best Show top 10	Locus ID BLAST score/e-value TF class Alias TAIR10 short description AT1G07010 289 / 6e-97 AtSLP1 Shewenella-like protein phosphatase 1, Calcineurin-like metallo-phosphoesterase superfamily protein (.1.2.3) AT1G18480 126 / 6e-34 AtSLP2 Shewenella-like protein phosphatase 2, Calcineurin-like metallo-phosphoesterase superfamily protein (.1)
Paralogs Show only best Show top 10	Gene ID BLAST score/e-value At best hit BLAST score/e-value TAIR10 short description Lus10031284 [exp] 428 / 5e-151 AT1G07010 467 / 2e-164 Shewenella-like protein phosphatase 1, Calcineurin-like metallo-phosphoesterase superfamily protein (.1.2.3) Lus10038865 [exp] 105 / 5e-26 AT1G18480 496 / 5e-176 Shewenella-like protein phosphatase 2, Calcineurin-like metallo-phosphoesterase superfamily protein (.1) Lus10014985 [exp] 104 / 9e-26 AT1G18480 492 / 1e-174 Shewenella-like protein phosphatase 2, Calcineurin-like metallo-phosphoesterase superfamily protein (.1)
Poplar homologues Show only best Show top 10	Locus ID BLAST score/e-value At best hit BLAST score/e-value TAIR10 short description Potri.009G077900 [exp] 318 / 3e-108 AT1G07010 538 / 0.0 Shewenella-like protein phosphatase 1, Calcineurin-like metallo-phosphoesterase superfamily protein (.1.2.3) Potri.013G127500 [exp] 118 / 9e-31 AT1G18480 538 / 0.0 Shewenella-like protein phosphatase 2, Calcineurin-like metallo-phosphoesterase superfamily protein (.1)
PFAM info
Representative CDS sequence Show only first row Show all	>Lus10031854 pacid=23180756 polypeptide=Lus10031854 locus=Lus10031854.g ID=Lus10031854.BGIv1.0 annot-version=v1.0 ATGGCGATTCCCTTGTTTAGAATCGCGATTCCTCACCAGTCCAATCTCCATAATGCATCATCATGCACTAAGAGAGACAAGCTCCGAACTCCTTCTGCTT TATCCGAGTTCAACGCCGTCTCTAGTGACAGATGCTGGGATCGATGGACTGGTGGCCAAACGGTTTTGGTGCAGCTTGGGGATGTGTTGGATAGAGGCGG AGGTGAGATAGCCATACTCTCCTTGCTGCGTTCGTTGGATGTTCAAGCAAGGCTACAAGGTGGAGTTGTTTTCCAGATCAATGGGAATCATGAGACGATG AACGTGGAAGGAGACTTCAGGTACGTTGATTCGACTGGATTCGACGACTGTCTTGATTTCCTGGCCTACTTGGAAGATGGCTTCGAGGATGATTGGGAGA GACGATTCATTGCCTGGGTTAGCGCATCAGACAAGCGAAGAAAAGAGCAGAACACGTCACGTAATCGCTGGGATCCATGGAACTTAGTCAAGAGGCAAAA GGGAATTGTTACTATATCAACCCTGTTGAGGCCTGGTGGAGCACTAGCGTGTGAATTGGCAAAACATGGTGTTCTGTTAAAGATCAATGACTGGGTTTTC TGCCATGGAGGCATTCTTCCTCACCATGTTGCACATGGTGTAGAGAGAACGAACAGGGAAGTGTCCCAGTGGATGAGAGGCCTTGGAAACGGTGACGATC AAAGTCCAAGCACTCGTTTCCTCGCGACACGAGGGTACGACAGTGTCGTCTGGAATCGGTTGTACTCAGCAAGACCTCTCTGCTCTAGGGGACCACCAAA TTAA
AA sequence Show only first row Show all	>Lus10031854 pacid=23180756 polypeptide=Lus10031854 locus=Lus10031854.g ID=Lus10031854.BGIv1.0 annot-version=v1.0 MAIPLFRIAIPHQSNLHNASSCTKRDKLRTPSALSEFNAVSSDRCWDRWTGGQTVLVQLGDVLDRGGGEIAILSLLRSLDVQARLQGGVVFQINGNHETM NVEGDFRYVDSTGFDDCLDFLAYLEDGFEDDWERRFIAWVSASDKRRKEQNTSRNRWDPWNLVKRQKGIVTISTLLRPGGALACELAKHGVLLKINDWVF CHGGILPHHVAHGVERTNREVSQWMRGLGNGDDQSPSTRFLATRGYDSVVWNRLYSARPLCSRGPPN

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DESeq2's median of ratios [FLAX]

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Coexpressed genes

Compare expression of checked genes Schematic diagram [FLAX] Schematic diagram [POPLAR]

*If you select 4 or less genes and then press "compare expression", expression will be shown as a graph. If you select more than 4 genes, expresion will be shown as a heat map.
*Color represents relative expression level among samples for each gene.

At best	At TF class	At alias	At description		Locus	MR	r	Symbol	HYP	R_s2_CTR	R_s2_Fox	R_s4_CTR	R_s4_Fox	R_r1_CTR	R_r1_Fox	R_r3_CTR	R_r3_Fox	R_r1s2_CTR	R_r1s2_Fox	R_r3s2_CTR	R_r3s2_Fox	R_s6_CTR	R_s6_Al4	R_s6_Al12	R_s6_Al24	R_s8_CTR	R_s8_Al4	R_s8_Al12	R_s8_Al24	R_r5_CTR	R_r5_Al4	R_r5_Al12	R_r5_Al24	R_r7_CTR	R_r7_Al4	R_r7_Al12	R_r7_Al24	LEAF_N	LEAF_P	LEAF_NPK	SAM	AR_Bet	AR_rdf	cPAR	TOP_Bet	TOP_rdf	iFIBa	iFIBb	MID_Bet	MID_rdf	tFIBa	tFIB_Gr	tFIB_Li	tFIB_Bi	tFIBb	tFIBb_PUL8	tFIBb_PUL24	tFIBb_PUL96	tFIBb_OPP8	tFIBb_OPP24	tFIBb_OPP96	sXYLa	sXYLb	sXYLb_PUL8	sXYLb_PUL24	sXYLb_PUL96	sXYLb_OPP8	sXYLb_OPP24	sXYLb_OPP96
AT1G07010		AtSLP1	Shewenella-like protein phosph...		Lus10031854 [exp]	0	1
AT1G07010		AtSLP1	Shewenella-like protein phosph...		Lus10031853 [exp]	1.0	0.9216
					Lus10030151 [exp]	4.5	0.8730
					Lus10008379 [exp]	8.4	0.8471
AT3G50140			Plant protein of unknown funct...		Lus10037762 [exp]	11.2	0.8389
AT1G07010		AtSLP1	Shewenella-like protein phosph...		Lus10031284 [exp]	19.3	0.8676
AT5G67140			F-box/RNI-like superfamily pro...		Lus10039564 [exp]	21.0	0.8361
AT1G65230			Uncharacterized conserved prot...		Lus10027002 [exp]	22.1	0.8550
AT4G16360			5'-AMP-activated protein kinas...		Lus10006390 [exp]	23.0	0.8168
AT3G19340			Protein of unknown function (D...		Lus10031975 [exp]	24.5	0.8338
AT1G53440			Leucine-rich repeat transmembr...		Lus10038153 [exp]	27.1	0.8239

Compare expression of checked genes

Lus10031854 coexpression network

*The number of genes in the network is adjusted within 50 genes.
*Gene name represents symbol(s) of closest Arabidopsis gene if symbol(s) for the gene itself doesn't exist.
*Circle diameter represents the number of connection with other genes within this network.
*Color for gene name represents subnetwork based on the result of network clustering.