Plant FIBer expression Database

External link	JGI Phytozome v13 [genome browser]
Symbol
Arabidopsis homologues Show only best Show top 10	Locus ID BLAST score/e-value TF class Alias TAIR10 short description AT1G07060 132 / 5e-37 unknown protein
Paralogs Show only best Show top 10	Gene ID BLAST score/e-value At best hit BLAST score/e-value TAIR10 short description Lus10031286 [exp] 362 / 6e-127 AT1G07060 134 / 3e-39 unknown protein
Poplar homologues Show only best Show top 10	Locus ID BLAST score/e-value At best hit BLAST score/e-value TAIR10 short description Potri.001G281500 [exp] 174 / 8e-53 AT1G07060 146 / 2e-43 unknown protein
PFAM info
Representative CDS sequence Show only first row Show all	>Lus10031856 pacid=23180596 polypeptide=Lus10031856 locus=Lus10031856.g ID=Lus10031856.BGIv1.0 annot-version=v1.0 ATGGCGTCTATGAGGAAAGCTGGTCCGTCTGGAGAAGACGGAACCGACAAACTCATTCGCTTATTCCGCTCCCAAATCATAGGCAGAAGGTTTTCTTCCT TCTCTTACGTTTTTCCGACATTCAGAGCTCACTCTAAGTTCCAATTTCGCAGGTTCGGCGATGAATCCCTGAGAATTCTCGAATCGATTGTGGCTTGCAA AGACAGGAAGACTATCACGGAAACGCGAACGAGCTTGAGAGACTTCATGAGATCCGAATCTCTCGCAGCCATTCGCGATCTCTCAGAGCGCACAGTTGAG CGGAAGCTTTTGACCGTTGAATTCTTTATACGCTCTTTCACTCTTATAGGAGATATCGAGAGTGTCTTGGCTCTCAACTATGAGGGATTGTTGCTGCGGG AACTGAAATCCACCACTCATCACTGGATGCGAGTTTCGTACGAGGAATGGCTGAATTTTGCTCAGCACTCGTTTGATAACGGATACCATGCAGTTGCTAT ACAGGCATGTGACAAAGCCCTGTTATGCCTTAAGAATTATGACTCCGACGATGTCAGAACCGGCGAACCTATCAAACGTGCAGAAGAAGTTGACAAAGTT AAGAAGCTCAAAGACTCTGCCCTTAGGTTTGAAGCTTCAAATTCTGGGCATTGCTGGATCTGCATAGATAGATGGAGAGAGACAGCTTGGTTTTGGCTCT CTGATGCCAAAGAATCACAGTGCATTCTGATATGGAGGGACCTCGGAATCTTAACGGGTCAAACGAACCAAATTGCTCGTGAAACAATCTCGTCCGGTGC TCGATCTCGTACCATTCACGACCAAAGCCTTCTTCGGCATGGGACGTTGAGTTTTGAAGAGAACTTGAACATTGAAACGTGCTTTGCTAGAAGTGTCGCG AGGGTGACCTTTCAGGAAGCCACCGTCTTGTTCCCAGAAACTCCATTAAGGCTTGTGCTTGGTTATAGAGGTCACGTTGATTTCGAGCCGAGGCCGAGCT AA
AA sequence Show only first row Show all	>Lus10031856 pacid=23180596 polypeptide=Lus10031856 locus=Lus10031856.g ID=Lus10031856.BGIv1.0 annot-version=v1.0 MASMRKAGPSGEDGTDKLIRLFRSQIIGRRFSSFSYVFPTFRAHSKFQFRRFGDESLRILESIVACKDRKTITETRTSLRDFMRSESLAAIRDLSERTVE RKLLTVEFFIRSFTLIGDIESVLALNYEGLLLRELKSTTHHWMRVSYEEWLNFAQHSFDNGYHAVAIQACDKALLCLKNYDSDDVRTGEPIKRAEEVDKV KKLKDSALRFEASNSGHCWICIDRWRETAWFWLSDAKESQCILIWRDLGILTGQTNQIARETISSGARSRTIHDQSLLRHGTLSFEENLNIETCFARSVA RVTFQEATVLFPETPLRLVLGYRGHVDFEPRPS

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DESeq2's median of ratios [FLAX]

Order by: Tissue Experiment Show only core collection Show again Show schematic diagram

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Coexpressed genes

Compare expression of checked genes Schematic diagram [FLAX] Schematic diagram [POPLAR]

*If you select 4 or less genes and then press "compare expression", expression will be shown as a graph. If you select more than 4 genes, expresion will be shown as a heat map.
*Color represents relative expression level among samples for each gene.

At best	At TF class	At alias	At description		Locus	MR	r	Symbol	HYP	R_s2_CTR	R_s2_Fox	R_s4_CTR	R_s4_Fox	R_r1_CTR	R_r1_Fox	R_r3_CTR	R_r3_Fox	R_r1s2_CTR	R_r1s2_Fox	R_r3s2_CTR	R_r3s2_Fox	R_s6_CTR	R_s6_Al4	R_s6_Al12	R_s6_Al24	R_s8_CTR	R_s8_Al4	R_s8_Al12	R_s8_Al24	R_r5_CTR	R_r5_Al4	R_r5_Al12	R_r5_Al24	R_r7_CTR	R_r7_Al4	R_r7_Al12	R_r7_Al24	LEAF_N	LEAF_P	LEAF_NPK	SAM	AR_Bet	AR_rdf	cPAR	TOP_Bet	TOP_rdf	iFIBa	iFIBb	MID_Bet	MID_rdf	tFIBa	tFIB_Gr	tFIB_Li	tFIB_Bi	tFIBb	tFIBb_PUL8	tFIBb_PUL24	tFIBb_PUL96	tFIBb_OPP8	tFIBb_OPP24	tFIBb_OPP96	sXYLa	sXYLb	sXYLb_PUL8	sXYLb_PUL24	sXYLb_PUL96	sXYLb_OPP8	sXYLb_OPP24	sXYLb_OPP96
AT1G07060			unknown protein		Lus10031856 [exp]	0	1
AT5G47670	CCAAT	NF-YB6, L1L	"nuclear factor Y, subunit B6"...		Lus10028845 [exp]	7.5	0.5664
AT5G33340		CDR1	CONSTITUTIVE DISEASE RESISTANC...		Lus10023445 [exp]	11.0	0.5390
AT1G05270			TraB family protein (.1)		Lus10038419 [exp]	13.0	0.5302
AT5G51490			Plant invertase/pectin methyle...		Lus10031141 [exp]	15.3	0.5168
AT2G01050			zinc ion binding;nucleic acid ...		Lus10032865 [exp]	18.3	0.5210
AT2G20710			Tetratricopeptide repeat (TPR)...		Lus10005599 [exp]	22.7	0.4852
AT3G18990	B3	REM39, VRN1	REDUCED VERNALIZATION RESPONSE...		Lus10019977 [exp]	29.8	0.4137
AT4G17920			RING/U-box superfamily protein...		Lus10000487 [exp]	37.3	0.4357
AT2G34740			Protein phosphatase 2C family ...		Lus10038455 [exp]	38.7	0.4387
AT5G40400			Pentatricopeptide repeat (PPR)...		Lus10022182 [exp]	41.4	0.4298

Compare expression of checked genes

Lus10031856 coexpression network

*The number of genes in the network is adjusted within 50 genes.
*Gene name represents symbol(s) of closest Arabidopsis gene if symbol(s) for the gene itself doesn't exist.
*Circle diameter represents the number of connection with other genes within this network.
*Color for gene name represents subnetwork based on the result of network clustering.