Plant FIBer expression Database

External link	JGI Phytozome v13 [genome browser]
Symbol
Arabidopsis homologues Show only best Show top 10	Locus ID BLAST score/e-value TF class Alias TAIR10 short description AT5G58510 469 / 7e-159 unknown protein AT5G55060 110 / 1e-26 unknown protein
Paralogs Show only best Show top 10	Gene ID BLAST score/e-value At best hit BLAST score/e-value TAIR10 short description Lus10031287 [exp] 692 / 0 AT5G58510 1122 / 0.0 unknown protein Lus10020371 [exp] 155 / 4e-44 AT4G26680 241 / 3e-75 Tetratricopeptide repeat (TPR)-like superfamily protein (.1), Tetratricopeptide repeat (TPR)-like superfamily protein (.2) Lus10043118 [exp] 105 / 6e-25 AT5G55060 630 / 0.0 unknown protein Lus10040061 [exp] 101 / 2e-23 AT5G55060 753 / 0.0 unknown protein Lus10032631 [exp] 100 / 6e-23 AT5G55060 643 / 0.0 unknown protein Lus10000118 [exp] 92 / 2e-21 AT5G55060 319 / 1e-106 unknown protein
Poplar homologues Show only best Show top 10	Locus ID BLAST score/e-value At best hit BLAST score/e-value TAIR10 short description Potri.009G076000 [exp] 523 / 5e-180 AT5G58510 1237 / 0.0 unknown protein Potri.001G280900 [exp] 119 / 6e-33 AT5G58510 79 / 5e-18 unknown protein Potri.001G280832 [exp] 117 / 1e-31 AT5G58510 164 / 3e-47 unknown protein Potri.011G089300 [exp] 106 / 5e-25 AT5G55060 770 / 0.0 unknown protein
PFAM info
Representative CDS sequence Show only first row Show all	>Lus10031857 pacid=23180645 polypeptide=Lus10031857 locus=Lus10031857.g ID=Lus10031857.BGIv1.0 annot-version=v1.0 ATGACAGAGGACATGCATGAAGAGCGCCTGCAGGCTGTTGAAGCATTTGGTGATTCATTCAACTTTTCTGCTCAGTTAGAGAGAGATGTTTTAGCATCAG ACATGTCAGCATTCAAAGCAGCAAATCCAGATGCTTTCTTCGAGGATTTTATCCGGTGGCACTCACCTGGAGATTGGATAGACGATGAGATTGATGACAA GGCAGCATCCGGACGTTCAAGCTCGAAAGACGACTGGCCTCCTCGAGGCAGACTTTCGCAAAGAATGTCTGATCAAGGAAATTTGTGGAGACAGATCTGG AACGATGCTCCGGCTTCCCCAGCTTATGATCAGAAACCACTTCTGGACCCAAATCGAGAAGGAGAGAAGATACTTCATTACCTGGAGACACTGCAGCCTC ACCAACTGGTGGAACAGATGGTCTGTACTGCTTTTAAAGCAGCGGCAGACACACTAAACCTGACCAGTTACGGCGGCCTGAATCAGATGACAACGAAAAT GGAGCAACTTTACCCGACCATGGCATCTGCATTGAAGCCCTTACAAAGTAATAGTATATCCAATGGCAGTGAGGCTATCGAGGACTTAAAGAGGATATGC GTAGTGTTCGAAAACATCGAGAAGTTACTTACTCTTGCGGCTTCCCTCCATCGCAAGTTCTTGGACGCACCTCGTCTGTCTCAAGCAATTTTCTCAGACT ACTACAGCTTTTACCTTCCGAAAATGGCGACAGGGACCCGGTCGCGGTCGGATGATGCCAAGCACCAGGAGTTTGACAAGAAGCAGCAAGTGGGGGAGAA TGAAAGGGAGGTGGTGTCGAATCTGTTCAGGCAGCCGACGGCGAACCAGAAGTGGAGGAAAGTGATAAGCATGGGCAATCTTCTCAACGGCCACGAGCCA ACGGTAAGGGAGATCATATTCACAACGCACGGGACCAGGAATGCTAATGGCTGTAAGAGCTTGGAAGGTGAGATGGAGACTTATCGGATGTACATAGCCG GAACTTCGAATGATCTCCGTGTAGCCCTTTCTGTGACTTCCTGTGACTAG
AA sequence Show only first row Show all	>Lus10031857 pacid=23180645 polypeptide=Lus10031857 locus=Lus10031857.g ID=Lus10031857.BGIv1.0 annot-version=v1.0 MTEDMHEERLQAVEAFGDSFNFSAQLERDVLASDMSAFKAANPDAFFEDFIRWHSPGDWIDDEIDDKAASGRSSSKDDWPPRGRLSQRMSDQGNLWRQIW NDAPASPAYDQKPLLDPNREGEKILHYLETLQPHQLVEQMVCTAFKAAADTLNLTSYGGLNQMTTKMEQLYPTMASALKPLQSNSISNGSEAIEDLKRIC VVFENIEKLLTLAASLHRKFLDAPRLSQAIFSDYYSFYLPKMATGTRSRSDDAKHQEFDKKQQVGENEREVVSNLFRQPTANQKWRKVISMGNLLNGHEP TVREIIFTTHGTRNANGCKSLEGEMETYRMYIAGTSNDLRVALSVTSCD

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DESeq2's median of ratios [FLAX]

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Coexpressed genes

Compare expression of checked genes Schematic diagram [FLAX] Schematic diagram [POPLAR]

*If you select 4 or less genes and then press "compare expression", expression will be shown as a graph. If you select more than 4 genes, expresion will be shown as a heat map.
*Color represents relative expression level among samples for each gene.

At best	At TF class	At alias	At description		Locus	MR	r	Symbol	HYP	R_s2_CTR	R_s2_Fox	R_s4_CTR	R_s4_Fox	R_r1_CTR	R_r1_Fox	R_r3_CTR	R_r3_Fox	R_r1s2_CTR	R_r1s2_Fox	R_r3s2_CTR	R_r3s2_Fox	R_s6_CTR	R_s6_Al4	R_s6_Al12	R_s6_Al24	R_s8_CTR	R_s8_Al4	R_s8_Al12	R_s8_Al24	R_r5_CTR	R_r5_Al4	R_r5_Al12	R_r5_Al24	R_r7_CTR	R_r7_Al4	R_r7_Al12	R_r7_Al24	LEAF_N	LEAF_P	LEAF_NPK	SAM	AR_Bet	AR_rdf	cPAR	TOP_Bet	TOP_rdf	iFIBa	iFIBb	MID_Bet	MID_rdf	tFIBa	tFIB_Gr	tFIB_Li	tFIB_Bi	tFIBb	tFIBb_PUL8	tFIBb_PUL24	tFIBb_PUL96	tFIBb_OPP8	tFIBb_OPP24	tFIBb_OPP96	sXYLa	sXYLb	sXYLb_PUL8	sXYLb_PUL24	sXYLb_PUL96	sXYLb_OPP8	sXYLb_OPP24	sXYLb_OPP96
AT5G58510			unknown protein		Lus10031857 [exp]	0	1
AT3G48010		ATCNGC16	cyclic nucleotide-gated channe...		Lus10002363 [exp]	3.5	0.7803
AT2G38580			Mitochondrial ATP synthase D c...		Lus10021384 [exp]	4.7	0.7904
AT2G45670			calcineurin B subunit-related ...		Lus10015853 [exp]	5.3	0.7660
AT3G43600		AtAO3, atAO-2, ...	Arabidopsis thaliana aldehyde ...		Lus10013393 [exp]	11.0	0.7513
AT4G05160			AMP-dependent synthetase and l...		Lus10002549 [exp]	11.0	0.7597
AT1G79640			Protein kinase superfamily pro...		Lus10000416 [exp]	14.3	0.7719
AT2G28880		ADCS, EMB1997	embryo defective 1997, aminode...		Lus10041403 [exp]	20.5	0.7708
AT1G05170			Galactosyltransferase family p...		Lus10021538 [exp]	21.6	0.7669
AT3G55020			Ypt/Rab-GAP domain of gyp1p su...		Lus10040349 [exp]	21.9	0.7265
AT5G52560		ATUSP	UDP-sugar pyrophosphorylase (....		Lus10000971 [exp]	22.3	0.7318

Compare expression of checked genes

Lus10031857 coexpression network

*The number of genes in the network is adjusted within 50 genes.
*Gene name represents symbol(s) of closest Arabidopsis gene if symbol(s) for the gene itself doesn't exist.
*Circle diameter represents the number of connection with other genes within this network.
*Color for gene name represents subnetwork based on the result of network clustering.