Plant FIBer expression Database

External link	JGI Phytozome v13 [genome browser]
Symbol
Arabidopsis homologues Show only best Show top 10	Locus ID BLAST score/e-value TF class Alias TAIR10 short description AT5G58560 341 / 7e-119 FOLK farnesol kinase, Phosphatidate cytidylyltransferase family protein (.1) AT5G04490 178 / 5e-55 VTE5 vitamin E pathway gene 5 (.1)
Paralogs Show only best Show top 10	Gene ID BLAST score/e-value At best hit BLAST score/e-value TAIR10 short description Lus10031288 [exp] 449 / 3e-161 AT5G58560 321 / 1e-109 farnesol kinase, Phosphatidate cytidylyltransferase family protein (.1) Lus10017447 [exp] 191 / 1e-59 AT5G04490 330 / 3e-113 vitamin E pathway gene 5 (.1) Lus10028835 [exp] 151 / 3e-44 AT5G04490 280 / 1e-93 vitamin E pathway gene 5 (.1)
Poplar homologues Show only best Show top 10	Locus ID BLAST score/e-value At best hit BLAST score/e-value TAIR10 short description Potri.009G074800 [exp] 413 / 3e-147 AT5G58560 354 / 8e-123 farnesol kinase, Phosphatidate cytidylyltransferase family protein (.1) Potri.001G279900 [exp] 394 / 7e-141 AT5G58560 333 / 8e-116 farnesol kinase, Phosphatidate cytidylyltransferase family protein (.1) Potri.009G074700 [exp] 385 / 5e-137 AT5G58560 332 / 3e-115 farnesol kinase, Phosphatidate cytidylyltransferase family protein (.1) Potri.010G232600 [exp] 199 / 4e-63 AT5G04490 320 / 2e-109 vitamin E pathway gene 5 (.1) Potri.008G029000 [exp] 54 / 4e-09 AT5G04490 117 / 7e-33 vitamin E pathway gene 5 (.1)
PFAM info	Clan ID Clan name Pfam ID Pfam name Pfam description CL0234 [flax] [poplar] CTPT PF01148 [flax] [poplar] CTP_transf_1 Cytidylyltransferase family
Representative CDS sequence Show only first row Show all	>Lus10031858 pacid=23180589 polypeptide=Lus10031858 locus=Lus10031858.g ID=Lus10031858.BGIv1.0 annot-version=v1.0 ATGTTGCTCCATCAGGATCCGATCGTATCGGACGCCATAGCGACGGGCTTGTCCGGAGTTGTCGCTCTATCTGTCCTCCGGCTGTGGGAAGAAACCGCCA AGCGCGGCGTCTTCGATCAGAAAGTGAATAGGAAGCTTGTGCACATAAGTATTGGGCTAGTTTTCATGCTTTGCTGGCCAATGTTCAGTTCTGGAAATCG CGGGGCCATCATGGCAGCTCTTATTCCAGGTGCCAACATTATAAAAATGTTTCTTATTGGATCTGGCATGTGGAAAGATGAAGCCACCGTCAAATCAATG AGCAGATTCGGCGATCGCAGGGAACTACTCAAAGGCCCGCTCTACTATGCTGCAGCAATCACGCTGGCTTGTGCAGTCGGTTGGAGGACTTCTCCGGTCG CCATTGCAGCAATATGCAATCTCTGTGCTGGAGACGGCATGGCAGACATAGTGGGGAGGCGATTTGGCAAACAGAAACTCAGTTACAACCGCAACAAGTC GATAGCAGGGAGCGTCGCAATGGCATCGTCTGGCTTCTTAGCATCTCTTGGGTATATGCATTATTTCGCGTCGTTCGGGTATGTCGAGGAGAGCTGGGGG ATGGTGTTGGGTTTCCTAATTGCCTCCCTTGCCTCGGCGTTTGTCGAATCACTCCCGATAAGTACGGAACTCGACGACAACCTTACTGTCACCCTGACTT CTTTCTTGGTAGGCAAGCTTGTCTTCTGA
AA sequence Show only first row Show all	>Lus10031858 pacid=23180589 polypeptide=Lus10031858 locus=Lus10031858.g ID=Lus10031858.BGIv1.0 annot-version=v1.0 MLLHQDPIVSDAIATGLSGVVALSVLRLWEETAKRGVFDQKVNRKLVHISIGLVFMLCWPMFSSGNRGAIMAALIPGANIIKMFLIGSGMWKDEATVKSM SRFGDRRELLKGPLYYAAAITLACAVGWRTSPVAIAAICNLCAGDGMADIVGRRFGKQKLSYNRNKSIAGSVAMASSGFLASLGYMHYFASFGYVEESWG MVLGFLIASLASAFVESLPISTELDDNLTVTLTSFLVGKLVF

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DESeq2's median of ratios [FLAX]

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Coexpressed genes

Compare expression of checked genes Schematic diagram [FLAX] Schematic diagram [POPLAR]

*If you select 4 or less genes and then press "compare expression", expression will be shown as a graph. If you select more than 4 genes, expresion will be shown as a heat map.
*Color represents relative expression level among samples for each gene.

At best	At TF class	At alias	At description		Locus	MR	r	Symbol	HYP	R_s2_CTR	R_s2_Fox	R_s4_CTR	R_s4_Fox	R_r1_CTR	R_r1_Fox	R_r3_CTR	R_r3_Fox	R_r1s2_CTR	R_r1s2_Fox	R_r3s2_CTR	R_r3s2_Fox	R_s6_CTR	R_s6_Al4	R_s6_Al12	R_s6_Al24	R_s8_CTR	R_s8_Al4	R_s8_Al12	R_s8_Al24	R_r5_CTR	R_r5_Al4	R_r5_Al12	R_r5_Al24	R_r7_CTR	R_r7_Al4	R_r7_Al12	R_r7_Al24	LEAF_N	LEAF_P	LEAF_NPK	SAM	AR_Bet	AR_rdf	cPAR	TOP_Bet	TOP_rdf	iFIBa	iFIBb	MID_Bet	MID_rdf	tFIBa	tFIB_Gr	tFIB_Li	tFIB_Bi	tFIBb	tFIBb_PUL8	tFIBb_PUL24	tFIBb_PUL96	tFIBb_OPP8	tFIBb_OPP24	tFIBb_OPP96	sXYLa	sXYLb	sXYLb_PUL8	sXYLb_PUL24	sXYLb_PUL96	sXYLb_OPP8	sXYLb_OPP24	sXYLb_OPP96
AT5G58560		FOLK	farnesol kinase, Phosphatidate...		Lus10031858 [exp]	0	1
AT1G67280			Glyoxalase/Bleomycin resistanc...		Lus10043235 [exp]	5.1	0.8482
AT1G69740		HEMB1	Aldolase superfamily protein (...		Lus10042716 [exp]	6.7	0.8370
AT1G76080		ATCDSP32, CDSP3...	ARABIDOPSIS THALIANA CHLOROPLA...		Lus10005624 [exp]	9.8	0.8352
AT3G17020			Adenine nucleotide alpha hydro...		Lus10016900 [exp]	10.5	0.8221
					Lus10018772 [exp]	11.9	0.8537
AT1G21760		ATFBP7	F-box protein 7 (.1)		Lus10029676 [exp]	18.2	0.8040
AT1G55535			unknown protein		Lus10021858 [exp]	18.9	0.8066
AT1G70100			unknown protein		Lus10010725 [exp]	20.8	0.8017
AT4G39150			DNAJ heat shock N-terminal dom...		Lus10017472 [exp]	24.2	0.7865
AT5G64260		EXL2, MSJ1.10	EXORDIUM like 2 (.1)		Lus10013789 [exp]	24.4	0.8226

Compare expression of checked genes

Lus10031858 coexpression network

*The number of genes in the network is adjusted within 50 genes.
*Gene name represents symbol(s) of closest Arabidopsis gene if symbol(s) for the gene itself doesn't exist.
*Circle diameter represents the number of connection with other genes within this network.
*Color for gene name represents subnetwork based on the result of network clustering.