Plant FIBer expression Database

External link	JGI Phytozome v13 [genome browser]
Symbol
Arabidopsis homologues Show only best Show top 10	Locus ID BLAST score/e-value TF class Alias TAIR10 short description AT3G51770 1045 / 0 ATEOL1, ETO1 ARABIDOPSIS ETHYLENE OVERPRODUCER 1, tetratricopeptide repeat (TPR)-containing protein (.1), tetratricopeptide repeat (TPR)-containing protein (.2) AT5G58550 958 / 0 EOL2 ETO1-like 2 (.1.2) AT4G02680 718 / 0 EOL1 ETO1-like 1 (.1) AT3G04240 57 / 8e-08 SEC secret agent, Tetratricopeptide repeat (TPR)-like superfamily protein (.1)
Paralogs Show only best Show top 10	Gene ID BLAST score/e-value At best hit BLAST score/e-value TAIR10 short description Lus10031289 [exp] 1729 / 0 AT3G51770 1083 / 0.0 ARABIDOPSIS ETHYLENE OVERPRODUCER 1, tetratricopeptide repeat (TPR)-containing protein (.1), tetratricopeptide repeat (TPR)-containing protein (.2) Lus10022660 [exp] 924 / 0 AT3G51770 1231 / 0.0 ARABIDOPSIS ETHYLENE OVERPRODUCER 1, tetratricopeptide repeat (TPR)-containing protein (.1), tetratricopeptide repeat (TPR)-containing protein (.2) Lus10002206 [exp] 847 / 0 AT3G51770 1089 / 0.0 ARABIDOPSIS ETHYLENE OVERPRODUCER 1, tetratricopeptide repeat (TPR)-containing protein (.1), tetratricopeptide repeat (TPR)-containing protein (.2) Lus10012238 [exp] 846 / 0 AT3G51770 1092 / 0.0 ARABIDOPSIS ETHYLENE OVERPRODUCER 1, tetratricopeptide repeat (TPR)-containing protein (.1), tetratricopeptide repeat (TPR)-containing protein (.2) Lus10022084 [exp] 753 / 0 AT4G02680 1267 / 0.0 ETO1-like 1 (.1) Lus10012472 [exp] 124 / 7e-32 AT3G51770 230 / 2e-70 ARABIDOPSIS ETHYLENE OVERPRODUCER 1, tetratricopeptide repeat (TPR)-containing protein (.1), tetratricopeptide repeat (TPR)-containing protein (.2) Lus10012510 [exp] 167 / 3e-27 AT3G51770 178 / 3e-35 ARABIDOPSIS ETHYLENE OVERPRODUCER 1, tetratricopeptide repeat (TPR)-containing protein (.1), tetratricopeptide repeat (TPR)-containing protein (.2) Lus10010040 [exp] 97 / 2e-23 AT3G51770 165 / 3e-48 ARABIDOPSIS ETHYLENE OVERPRODUCER 1, tetratricopeptide repeat (TPR)-containing protein (.1), tetratricopeptide repeat (TPR)-containing protein (.2) Lus10010041 [exp] 65 / 2e-12 AT3G51770 76 / 3e-17 ARABIDOPSIS ETHYLENE OVERPRODUCER 1, tetratricopeptide repeat (TPR)-containing protein (.1), tetratricopeptide repeat (TPR)-containing protein (.2)
Poplar homologues Show only best Show top 10	Locus ID BLAST score/e-value At best hit BLAST score/e-value TAIR10 short description Potri.001G280100 [exp] 1194 / 0 AT3G51770 1192 / 0.0 ARABIDOPSIS ETHYLENE OVERPRODUCER 1, tetratricopeptide repeat (TPR)-containing protein (.1), tetratricopeptide repeat (TPR)-containing protein (.2) Potri.009G075300 [exp] 1194 / 0 AT3G51770 1206 / 0.0 ARABIDOPSIS ETHYLENE OVERPRODUCER 1, tetratricopeptide repeat (TPR)-containing protein (.1), tetratricopeptide repeat (TPR)-containing protein (.2) Potri.016G123800 [exp] 1039 / 0 AT3G51770 1415 / 0.0 ARABIDOPSIS ETHYLENE OVERPRODUCER 1, tetratricopeptide repeat (TPR)-containing protein (.1), tetratricopeptide repeat (TPR)-containing protein (.2) Potri.006G103400 [exp] 1016 / 0 AT3G51770 1399 / 0.0 ARABIDOPSIS ETHYLENE OVERPRODUCER 1, tetratricopeptide repeat (TPR)-containing protein (.1), tetratricopeptide repeat (TPR)-containing protein (.2) Potri.002G048300 [exp] 766 / 0 AT4G02680 1293 / 0.0 ETO1-like 1 (.1) Potri.005G214400 [exp] 764 / 0 AT4G02680 1264 / 0.0 ETO1-like 1 (.1) Potri.019G025600 [exp] 52 / 2e-06 AT3G04240 1689 / 0.0 secret agent, Tetratricopeptide repeat (TPR)-like superfamily protein (.1) Potri.013G051400 [exp] 50 / 8e-06 AT3G04240 1684 / 0.0 secret agent, Tetratricopeptide repeat (TPR)-like superfamily protein (.1)
PFAM info	Clan ID Clan name Pfam ID Pfam name Pfam description CL0020 [flax] [poplar] TPR PF00515 [flax] [poplar] TPR_1 Tetratricopeptide repeat
Representative CDS sequence Show only first row Show all	>Lus10031859 pacid=23180767 polypeptide=Lus10031859 locus=Lus10031859.g ID=Lus10031859.BGIv1.0 annot-version=v1.0 ATGGGGAAACTCAGATCCCTTAAGGTATTGGAGAAGTTCAAAGCAGCTCAAGTTCACCATGCCTTCATCACTACTCCGCCGGAAACTCCTTACAGAGGAG GAAAACCACCACCCCAACAGCCGTCTTCTTCCTCCTCTGCCGCCTCTTCTTCGTCGTCGAAATCTGAAGCTGCTTGTATGTTGCTTCCGTATGGCCTCCC GACGACAGACCTAATGGAGCCGAGAATCGATCCCTGGTTGAAGCCGGTGGACTCCGCGGATTCATTATCCGACCTCTACCGTCGCTTTTCTGCTACTGCT GATTCCGCTTCGCATCTTCTTCTTCTTATGGAGCAGTACTCAATCTCGCTTTCAATGGCGGATCCTAAGCTCCCTCGGAAGTGCCTCTCCGCAGCTAGAA AGCACGCCGTTGATGTCTACTCGAAAGTGATTCTCTCCTCCTGGTTGAGATTTGACAAGAGAGAAGACCAGCTCACAGCTATCTCCCCCATGGATTGCTC TGGAGGTAATTTGCTAGAGTGTCCGACTTCTGCTTTGATTTCTGGTTTGAATTCCGTCAATCATGATGATGATCTCTGCCAATGCGGTAGCAAAGAGAAC GAAGAAAGTCAACAAAACGAATGCTTAGTTTCTCCTAGTGTTACCACCGCCATTGCGATGCTAGACCGTGTATTTCTTTGCATTAATGGAGATTCAGTAC TCTGCAGTAGATCCAGGATTGCTAGTCTGTCTGCTCCATTAAAGGCCATGTTGTACGGAGGATTCCTCGAATCAAGGACGAGGAAGATCGATTTATCCAA CACCGGCATTTCGCTCCAAGGAATGAAAGCTGTAGAGATTTACAGCAGGATCAACAGGTTCGAATTCGAATTTGCTACTCCGGATATAGTTCTCGAGGTC CTCTCCTTTTCGAGCAGATTCTGCTGCGAGGACATGAAATCGGCTTGCGATTCTCATTTGGCTTCTTTAGTTCATAGGATGGAAGATGCAGTGATCCTGA TCGATTACGGATTAGAACATAGGTCAACTCTACTCGTTGCCTCTTGTTTACAGGTAATGCTACGACACTTGCCCGATTCGCTCTCGAAAAACCGAAGAAT GCTTCGAGTTCTTTGCGGATCTAGAGCTAGGGAGAGACTATCCATCCTAGGACACCCTGCAGCTTTCTTGCTTTACTATTTCCTCGCGCAAGTCGCTCTC CAAGAAACGACGTCGTCCTCCTCCAACATCACAGTCATGTTGTTGGAAGGAATGCTGGAGTTTGCTGTATTAAAATGGCAGAAGGCTCTGGCGTTTCACC AGCTGGGATGTATAATGCTTGAAAGAAAGGAGTTTAACGATGCTCAGTGTTATTTCGAATCCGCAGCCGATTCTGGACATGTTTATTCTCTAGCTGGCGT TGCGAGGGCGAAATTCAAGCAAGGCCAACAATACTCAGCCTTCAGGTTGATGAACTCCTTAGTCTTTGAACATAAACCTGTGGGATGGATGTATCAAGAG AGGTCTTTATACGGACTTGGCCGCGAAAAGATCATGGATTTGAACACGGCCACTGAGCTCGATCCGACTCTTTCGTTTCCTTACAAGTTTAGAGCAGTGA AGAAGGTGGAAGAGAAGAAGGATATTGCAGCAGGTGTATCAGAGATTGATAAGTTCATCGGGTTCAAGATCGAGGCTGATTGCCTTGAGCTGCGAGCTTG GTTTTTCATTGCGCTCGAGGATTATGACCGAGCTTCCAGGGATCTACGAGCCTTGCTGACTCTGGAACCGAATTATATGATGTATAACGGGAAGATGTGC GCGAGTTATGTCGTTGAGCTGCTGAACTGCCGGCTTCTTCTTCAGCAGTGGAGCTTGGCTGATTGCTGGTTTCAGCTTCACGACCGATGGTCGAGTGTCG ATGATATTGGTTCGTTGGCTATCATTCATCAGATGCTAGTGAATGATCCAACGAACAGCCTGCTCCGGTTTCGACAGTCTTTGCTCTTGCTCAGGTTGAA CTCTCCAAAGGCTGCAATGAGCTGTCTACGATTAGCTCGAAATCACGCTACCTCGGAATACGAGAAGCTTATCTACGAAGGGTGGATTCTTTACGACATC GGTCATAGAGTCAAAGCACTTTCGAAAGCCGAGAAATCCCTTCTGATCAAGAGATCTTTCGAAGCATTTTTTCTGAAAGCTTACATATTGGCTGACACAA ACTTAGATCCCTTATCTTCATCTCATGTCATCCAACTCTTGGAAGAAGCTCTCAAATGTCCTTCAGATTGTCTGAGGAAAGGGCAAGCATTGAACAACTT GGGAAGTATGTACGTGGACTGTGGGAAGCTAGATAAGGCTGCAGATTGCTACACGAATGCTCTCACCATTAAACACACGAGAGCTCATCAAGGACTGGCG CGAGTCTATCAACTGCGAAATCAGCGAAAGGCTGCGTATGATGAGATGACCAAGTTGGTAGAGATAGCACATTGCAACGCTTCAGCGTACGAGAAACGAT CGGAGTATTGCGACCGTGAGATGGCCAAGGACGACCTGAATATGGCCACCCGACTCGACCCCCTAAGAACATATCCTTACAGATTCAGAGCTGCTGTGCT AATGGACGACCAGAAGGAAACGGAAGCTGTGGAAGAGCTAAGCAGGGCTATAGCTTTCAAACCTGAGCTTCAAATGCTGCATCTTCGAGCAGCATTCTAC GAATCGATGGGAGACACCCTCTCCGCCTTACGTGACTGCGAGGCAGCTCTCTGCCTCAATCCAAACCACATCGACACACTCGATCTATACAACAGGACTA AGGACAGAGCCAGCCGGCAGCATGGCATTTGA
AA sequence Show only first row Show all	>Lus10031859 pacid=23180767 polypeptide=Lus10031859 locus=Lus10031859.g ID=Lus10031859.BGIv1.0 annot-version=v1.0 MGKLRSLKVLEKFKAAQVHHAFITTPPETPYRGGKPPPQQPSSSSSAASSSSSKSEAACMLLPYGLPTTDLMEPRIDPWLKPVDSADSLSDLYRRFSATA DSASHLLLLMEQYSISLSMADPKLPRKCLSAARKHAVDVYSKVILSSWLRFDKREDQLTAISPMDCSGGNLLECPTSALISGLNSVNHDDDLCQCGSKEN EESQQNECLVSPSVTTAIAMLDRVFLCINGDSVLCSRSRIASLSAPLKAMLYGGFLESRTRKIDLSNTGISLQGMKAVEIYSRINRFEFEFATPDIVLEV LSFSSRFCCEDMKSACDSHLASLVHRMEDAVILIDYGLEHRSTLLVASCLQVMLRHLPDSLSKNRRMLRVLCGSRARERLSILGHPAAFLLYYFLAQVAL QETTSSSSNITVMLLEGMLEFAVLKWQKALAFHQLGCIMLERKEFNDAQCYFESAADSGHVYSLAGVARAKFKQGQQYSAFRLMNSLVFEHKPVGWMYQE RSLYGLGREKIMDLNTATELDPTLSFPYKFRAVKKVEEKKDIAAGVSEIDKFIGFKIEADCLELRAWFFIALEDYDRASRDLRALLTLEPNYMMYNGKMC ASYVVELLNCRLLLQQWSLADCWFQLHDRWSSVDDIGSLAIIHQMLVNDPTNSLLRFRQSLLLLRLNSPKAAMSCLRLARNHATSEYEKLIYEGWILYDI GHRVKALSKAEKSLLIKRSFEAFFLKAYILADTNLDPLSSSHVIQLLEEALKCPSDCLRKGQALNNLGSMYVDCGKLDKAADCYTNALTIKHTRAHQGLA RVYQLRNQRKAAYDEMTKLVEIAHCNASAYEKRSEYCDREMAKDDLNMATRLDPLRTYPYRFRAAVLMDDQKETEAVEELSRAIAFKPELQMLHLRAAFY ESMGDTLSALRDCEAALCLNPNHIDTLDLYNRTKDRASRQHGI

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DESeq2's median of ratios [FLAX]

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Coexpressed genes

Compare expression of checked genes Schematic diagram [FLAX] Schematic diagram [POPLAR]

*If you select 4 or less genes and then press "compare expression", expression will be shown as a graph. If you select more than 4 genes, expresion will be shown as a heat map.
*Color represents relative expression level among samples for each gene.

At best	At TF class	At alias	At description		Locus	MR	r	Symbol	HYP	R_s2_CTR	R_s2_Fox	R_s4_CTR	R_s4_Fox	R_r1_CTR	R_r1_Fox	R_r3_CTR	R_r3_Fox	R_r1s2_CTR	R_r1s2_Fox	R_r3s2_CTR	R_r3s2_Fox	R_s6_CTR	R_s6_Al4	R_s6_Al12	R_s6_Al24	R_s8_CTR	R_s8_Al4	R_s8_Al12	R_s8_Al24	R_r5_CTR	R_r5_Al4	R_r5_Al12	R_r5_Al24	R_r7_CTR	R_r7_Al4	R_r7_Al12	R_r7_Al24	LEAF_N	LEAF_P	LEAF_NPK	SAM	AR_Bet	AR_rdf	cPAR	TOP_Bet	TOP_rdf	iFIBa	iFIBb	MID_Bet	MID_rdf	tFIBa	tFIB_Gr	tFIB_Li	tFIB_Bi	tFIBb	tFIBb_PUL8	tFIBb_PUL24	tFIBb_PUL96	tFIBb_OPP8	tFIBb_OPP24	tFIBb_OPP96	sXYLa	sXYLb	sXYLb_PUL8	sXYLb_PUL24	sXYLb_PUL96	sXYLb_OPP8	sXYLb_OPP24	sXYLb_OPP96
AT3G51770		ATEOL1, ETO1	ARABIDOPSIS ETHYLENE OVERPRODU...		Lus10031859 [exp]	0	1
AT2G28670		ESB1	ENHANCED SUBERIN 1, Disease re...		Lus10029585 [exp]	3.3	0.9482
AT1G22360		ATUGT85A2, AT2	UDP-glucosyl transferase 85A2 ...		Lus10041055 [exp]	4.5	0.9404
AT3G56230			BTB/POZ domain-containing prot...		Lus10010216 [exp]	4.9	0.9386
AT2G28670		ESB1	ENHANCED SUBERIN 1, Disease re...		Lus10006317 [exp]	6.0	0.9382
AT1G19230			Riboflavin synthase-like super...		Lus10033423 [exp]	6.5	0.8945
AT2G21100			Disease resistance-responsive ...		Lus10034478 [exp]	7.5	0.9364
AT3G55230			Disease resistance-responsive ...		Lus10030318 [exp]	10.0	0.9375
AT4G30190		PMA2, AHA2	PLASMA MEMBRANE PROTON ATPASE ...		Lus10001631 [exp]	11.5	0.8596
AT4G06536			SPla/RYanodine receptor (SPRY)...		Lus10010045 [exp]	12.3	0.9272
AT3G15730		PLDALPHA1	phospholipase D alpha 1 (.1)		Lus10018575 [exp]	12.7	0.9373

Compare expression of checked genes

Lus10031859 coexpression network

*The number of genes in the network is adjusted within 50 genes.
*Gene name represents symbol(s) of closest Arabidopsis gene if symbol(s) for the gene itself doesn't exist.
*Circle diameter represents the number of connection with other genes within this network.
*Color for gene name represents subnetwork based on the result of network clustering.