Plant FIBer expression Database

External link	JGI Phytozome v13 [genome browser]
Symbol
Arabidopsis homologues Show only best Show top 10	Locus ID BLAST score/e-value TF class Alias TAIR10 short description AT2G40270 411 / 9e-138 Protein kinase family protein (.1.2) AT4G18640 411 / 4e-135 MRH1 morphogenesis of root hair 1, Leucine-rich repeat protein kinase family protein (.1) AT5G45840 396 / 2e-129 Leucine-rich repeat protein kinase family protein (.1.2) AT3G56050 385 / 2e-127 Protein kinase family protein (.1.2) AT5G58540 362 / 1e-120 Protein kinase superfamily protein (.1.2.3) AT5G07150 336 / 1e-107 Leucine-rich repeat protein kinase family protein (.1) AT1G63430 252 / 2e-74 Leucine-rich repeat protein kinase family protein (.1.2) AT5G41180 227 / 3e-65 leucine-rich repeat transmembrane protein kinase family protein (.1) AT4G22130 143 / 3e-36 SRF8 STRUBBELIG-receptor family 8 (.1.2) AT1G78980 142 / 3e-35 SRF5 STRUBBELIG-receptor family 5 (.1)
Paralogs Show only best Show top 10	Gene ID BLAST score/e-value At best hit BLAST score/e-value TAIR10 short description Lus10031290 [exp] 937 / 0 AT4G18640 457 / 7e-153 morphogenesis of root hair 1, Leucine-rich repeat protein kinase family protein (.1) Lus10017439 [exp] 447 / 5e-149 AT5G45840 457 / 1e-152 Leucine-rich repeat protein kinase family protein (.1.2) Lus10007516 [exp] 444 / 5e-148 AT5G45840 463 / 4e-155 Leucine-rich repeat protein kinase family protein (.1.2) Lus10029228 [exp] 386 / 1e-128 AT5G45840 444 / 5e-151 Leucine-rich repeat protein kinase family protein (.1.2) Lus10025400 [exp] 386 / 2e-125 AT5G45840 608 / 0.0 Leucine-rich repeat protein kinase family protein (.1.2) Lus10015277 [exp] 379 / 3e-123 AT5G45840 548 / 0.0 Leucine-rich repeat protein kinase family protein (.1.2) Lus10007281 [exp] 365 / 1e-116 AT5G45840 568 / 0.0 Leucine-rich repeat protein kinase family protein (.1.2) Lus10008486 [exp] 248 / 7e-73 AT1G63430 878 / 0.0 Leucine-rich repeat protein kinase family protein (.1.2) Lus10001489 [exp] 244 / 2e-71 AT1G63430 879 / 0.0 Leucine-rich repeat protein kinase family protein (.1.2)
Poplar homologues Show only best Show top 10	Locus ID BLAST score/e-value At best hit BLAST score/e-value TAIR10 short description Potri.009G075400 [exp] 559 / 0 AT2G40270 449 / 9e-152 Protein kinase family protein (.1.2) Potri.001G280200 [exp] 549 / 0 AT2G40270 430 / 2e-144 Protein kinase family protein (.1.2) Potri.008G072100 [exp] 477 / 2e-161 AT2G40270 451 / 2e-153 Protein kinase family protein (.1.2) Potri.010G185300 [exp] 469 / 7e-158 AT2G40270 434 / 1e-146 Protein kinase family protein (.1.2) Potri.011G067400 [exp] 416 / 1e-136 AT4G18640 678 / 0.0 morphogenesis of root hair 1, Leucine-rich repeat protein kinase family protein (.1) Potri.004G058100 [exp] 415 / 4e-136 AT4G18640 694 / 0.0 morphogenesis of root hair 1, Leucine-rich repeat protein kinase family protein (.1) Potri.001G106600 [exp] 246 / 3e-72 AT1G63430 839 / 0.0 Leucine-rich repeat protein kinase family protein (.1.2) Potri.003G124800 [exp] 240 / 4e-70 AT1G63430 858 / 0.0 Leucine-rich repeat protein kinase family protein (.1.2) Potri.005G036600 [exp] 148 / 1e-38 AT1G54820 434 / 4e-150 Protein kinase superfamily protein (.1) Potri.013G025700 [exp] 148 / 1e-38 AT1G54820 438 / 7e-152 Protein kinase superfamily protein (.1)
PFAM info	Clan ID Clan name Pfam ID Pfam name Pfam description CL0016 [flax] [poplar] PKinase PF07714 [flax] [poplar] PK_Tyr_Ser-Thr Protein tyrosine and serine/threonine kinase CL0022 [flax] [poplar] LRR PF00560 [flax] [poplar] LRR_1 Leucine Rich Repeat CL0022 [flax] [poplar] PF08263 [flax] [poplar] LRRNT_2 Leucine rich repeat N-terminal domain
Representative CDS sequence Show only first row Show all	>Lus10031860 pacid=23180724 polypeptide=Lus10031860 locus=Lus10031860.g ID=Lus10031860.BGIv1.0 annot-version=v1.0 ATGTCTGGGTTTTATCTCTCAATCTTACTGCTACTGCTGTTTCTCCAAACTCTCACCTCCTCCTGCTACTCTCTCAATCCTCAACGCACGGCGCTGCTGA GATTCAAGGAGAAAGTGGAGAGTGACCCATTCGGAGGTTTGTCCACGTGGCACCGCAATTCGGCTCACTCCCATTGTTCTTGGTTTGGGGTTCGCTGCTC TGAACTCGGCCAAGTTGTCAGCTTGCATTTGCAAGATCTGTGCCTGAGTGGGACATTGGCTCCTGAGATTCAGAAGTTGACTCACTTGAAATCCTTAGTT CTAAGGAACAATTCATTTAGTGGAAACATTCCCAGCGAGATTGCGGAGTTGAATGAGTTGGAGGTGTTGGACTTGGGATATAACAACTTCAGCGGACCGT TTCCATCAGACTTCTTTGTGACAACTCTTTTGCTTGACAATAACAAGTTACTTGTCGGTGGCTTGTCTTCTGAATTCAATAAGCTTCAGCCGTTGTCTGA TGAGAATGCGATGCGAATGAAGGCTCATGATAGGGATGTTACCTGCTTCAAAGATGGAGAAACAGCTGCGAAACGGATGCTGCTACAAATAGCCGAAGTC CCAAGCTCACCGGATTTGTTTCCGCCATCATTTCCGCCCTTGGAATCTCCGTTCTCACAGTCACTACCGCCCTCTAGATCACCAGCACCATCATTTTCCC CATCACCATCTCCTAAGGCTCCATCCTTAAGCCCTGCAACAGCACCATCTTCATCATCCGATCCACCGAACATTGCATTTGTGCGTCCACAAGATCGTCA GGCTCCTGCTCCTAATGGCGGACATATGAACAATGACGGCTTCAGACGAAAACACCACCGCACAGCTTTAATTGCTGGTATAGCTGGAGGATCTCTGTTC ATGGTGCTTTCAGTTGTTGGACTCGCCTTCATCAGAAGCAACAAGGTCGTAACTGTCAGGCCTTGGGCCACAGGACTAAGTGGACAGCTACAGAGGGCAT TCGTAACAGGTGTTCCGAAACTGAAGAGGTTGGAACTTCAAGCAGCTTGTGAAGATTTCAGTAACATAATTGGTTCCTTCGTTGATGGCACTGTTTATAA AGGTACATTATCGAGCGGGGTTGAAATCGCTGTAACATCGGTCTCAGTCTCGTCTAAGAGGGACTGGTCGAAGAATATGGAAGCACGATTCCAAAAAAAG ATCGCCACGTTATCGAGAGTGAACCACAAGAATTTCGTCAATCTTATCGGATTCTGTGAAGAGGACGAGCCTTTCACGAGGATGATGGTTTTCGAGTATG CCCCCAACGGAACGCTATTCGAACATTTGCACATAAAGGAAGCAGAACACTTAGACTGGGGAGCGAGATTACGGATAGCGATGGGAATGGCTTACTGCCT CGAACACATGCACCAACTGACGCCACCAATTTACCATGACACTCTTCGGTCATCCTCGGTGTATCTAACGGAAGACTACGCCGGGAAGATATCGGATTTC TGCTTCTGGAACGACGTAACAGCAGCGAAGATGGGACCGGAGGCGACGACAATAGAGATTCTCGAATCCCCACCGGCGGATGCAGGAAGCAATGTGTACA GTTTCGGGATGGTTCTGCTCGAACTGATAACCGGCCGGATCCCATATACATCAGTCGACGGCTCTCTCACCGACTGGGCGTCTAATCATTTGAGGTCGGA CCAACCGTTGGGCAAAATGGTCGATCCGAGTCTGAAAGCGTTCCAGCAGGTCGAGCTCGAGAAGCTGGTTGATGTTATAAGGGACTGCATTCGTCCTGAT CCGAAAACGAGACTACCAATGAGAGATGTTGCGGAGAGACTGCGAGAGATCACTTCCATGGATCCTGATCGAGCAACGCCGCGATTGTCTCCTCTGTGGT GGGCGGAACTCGAGATAATGTCGACCGATGGATGCTGA
AA sequence Show only first row Show all	>Lus10031860 pacid=23180724 polypeptide=Lus10031860 locus=Lus10031860.g ID=Lus10031860.BGIv1.0 annot-version=v1.0 MSGFYLSILLLLLFLQTLTSSCYSLNPQRTALLRFKEKVESDPFGGLSTWHRNSAHSHCSWFGVRCSELGQVVSLHLQDLCLSGTLAPEIQKLTHLKSLV LRNNSFSGNIPSEIAELNELEVLDLGYNNFSGPFPSDFFVTTLLLDNNKLLVGGLSSEFNKLQPLSDENAMRMKAHDRDVTCFKDGETAAKRMLLQIAEV PSSPDLFPPSFPPLESPFSQSLPPSRSPAPSFSPSPSPKAPSLSPATAPSSSSDPPNIAFVRPQDRQAPAPNGGHMNNDGFRRKHHRTALIAGIAGGSLF MVLSVVGLAFIRSNKVVTVRPWATGLSGQLQRAFVTGVPKLKRLELQAACEDFSNIIGSFVDGTVYKGTLSSGVEIAVTSVSVSSKRDWSKNMEARFQKK IATLSRVNHKNFVNLIGFCEEDEPFTRMMVFEYAPNGTLFEHLHIKEAEHLDWGARLRIAMGMAYCLEHMHQLTPPIYHDTLRSSSVYLTEDYAGKISDF CFWNDVTAAKMGPEATTIEILESPPADAGSNVYSFGMVLLELITGRIPYTSVDGSLTDWASNHLRSDQPLGKMVDPSLKAFQQVELEKLVDVIRDCIRPD PKTRLPMRDVAERLREITSMDPDRATPRLSPLWWAELEIMSTDGC

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DESeq2's median of ratios [FLAX]

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Coexpressed genes

Compare expression of checked genes Schematic diagram [FLAX] Schematic diagram [POPLAR]

*If you select 4 or less genes and then press "compare expression", expression will be shown as a graph. If you select more than 4 genes, expresion will be shown as a heat map.
*Color represents relative expression level among samples for each gene.

At best	At TF class	At alias	At description		Locus	MR	r	Symbol	HYP	R_s2_CTR	R_s2_Fox	R_s4_CTR	R_s4_Fox	R_r1_CTR	R_r1_Fox	R_r3_CTR	R_r3_Fox	R_r1s2_CTR	R_r1s2_Fox	R_r3s2_CTR	R_r3s2_Fox	R_s6_CTR	R_s6_Al4	R_s6_Al12	R_s6_Al24	R_s8_CTR	R_s8_Al4	R_s8_Al12	R_s8_Al24	R_r5_CTR	R_r5_Al4	R_r5_Al12	R_r5_Al24	R_r7_CTR	R_r7_Al4	R_r7_Al12	R_r7_Al24	LEAF_N	LEAF_P	LEAF_NPK	SAM	AR_Bet	AR_rdf	cPAR	TOP_Bet	TOP_rdf	iFIBa	iFIBb	MID_Bet	MID_rdf	tFIBa	tFIB_Gr	tFIB_Li	tFIB_Bi	tFIBb	tFIBb_PUL8	tFIBb_PUL24	tFIBb_PUL96	tFIBb_OPP8	tFIBb_OPP24	tFIBb_OPP96	sXYLa	sXYLb	sXYLb_PUL8	sXYLb_PUL24	sXYLb_PUL96	sXYLb_OPP8	sXYLb_OPP24	sXYLb_OPP96
AT5G45840			Leucine-rich repeat protein ki...		Lus10031860 [exp]	0	1
AT4G18640		MRH1	morphogenesis of root hair 1, ...		Lus10031290 [exp]	1.0	0.9870
AT1G27920		MAP65-8	microtubule-associated protein...		Lus10015789 [exp]	1.4	0.9815
AT1G63300			Myosin heavy chain-related pro...		Lus10008482 [exp]	2.6	0.9651
AT4G28500	NAC	ANAC073, SND2, ...	SECONDARY WALL-ASSOCIATED NAC ...		Lus10013967 [exp]	3.2	0.9715
AT5G55970			RING/U-box superfamily protein...		Lus10022567 [exp]	3.5	0.9730
AT1G30900		VSR6, VSR3;3, B...	VACUOLAR SORTING RECEPTOR 3;3,...		Lus10006944 [exp]	4.6	0.9735
AT5G42710			unknown protein		Lus10010807 [exp]	6.6	0.9615
AT1G61100			disease resistance protein (TI...		Lus10032661 [exp]	6.7	0.9574
AT5G55970			RING/U-box superfamily protein...		Lus10016652 [exp]	7.7	0.9712
AT1G71320			F-box family protein (.1)		Lus10038210 [exp]	7.7	0.9600

Compare expression of checked genes

Lus10031860 coexpression network

*The number of genes in the network is adjusted within 50 genes.
*Gene name represents symbol(s) of closest Arabidopsis gene if symbol(s) for the gene itself doesn't exist.
*Circle diameter represents the number of connection with other genes within this network.
*Color for gene name represents subnetwork based on the result of network clustering.