Plant FIBer expression Database

External link	JGI Phytozome v13 [genome browser]
Symbol
Arabidopsis homologues Show only best Show top 10	Locus ID BLAST score/e-value TF class Alias TAIR10 short description AT1G07120 372 / 3e-127 unknown protein AT4G18570 265 / 2e-82 Tetratricopeptide repeat (TPR)-like superfamily protein (.1) AT3G25690 231 / 3e-68 AtCHUP1, CHUP1 Arabidopsis thaliana CHLOROPLAST UNUSUAL POSITIONING 1, Hydroxyproline-rich glycoprotein family protein (.1.2.3) AT1G48280 191 / 5e-55 hydroxyproline-rich glycoprotein family protein (.1) AT1G11070 52 / 7e-07 unknown protein
Paralogs Show only best Show top 10	Gene ID BLAST score/e-value At best hit BLAST score/e-value TAIR10 short description Lus10031293 [exp] 503 / 8e-180 AT1G07120 267 / 3e-87 unknown protein Lus10000986 [exp] 275 / 4e-87 AT4G18570 501 / 1e-171 Tetratricopeptide repeat (TPR)-like superfamily protein (.1) Lus10015292 [exp] 275 / 2e-86 AT4G18570 568 / 0.0 Tetratricopeptide repeat (TPR)-like superfamily protein (.1) Lus10025419 [exp] 270 / 2e-84 AT4G18570 565 / 0.0 Tetratricopeptide repeat (TPR)-like superfamily protein (.1) Lus10034382 [exp] 234 / 1e-68 AT3G25690 1221 / 0.0 Arabidopsis thaliana CHLOROPLAST UNUSUAL POSITIONING 1, Hydroxyproline-rich glycoprotein family protein (.1.2.3) Lus10034264 [exp] 232 / 8e-68 AT3G25690 1230 / 0.0 Arabidopsis thaliana CHLOROPLAST UNUSUAL POSITIONING 1, Hydroxyproline-rich glycoprotein family protein (.1.2.3) Lus10033704 [exp] 75 / 3e-14 AT4G04980 311 / 4e-94 unknown protein Lus10031636 [exp] 71 / 7e-13 AT4G04980 313 / 3e-95 unknown protein Lus10013931 [exp] 0 / 1 AT4G18570 321 / 5e-102 Tetratricopeptide repeat (TPR)-like superfamily protein (.1)
Poplar homologues Show only best Show top 10	Locus ID BLAST score/e-value At best hit BLAST score/e-value TAIR10 short description Potri.009G073600 [exp] 451 / 1e-157 AT1G07120 434 / 4e-151 unknown protein Potri.001G279000 [exp] 442 / 6e-154 AT1G07120 440 / 2e-153 unknown protein Potri.004G054900 [exp] 282 / 2e-89 AT4G18570 420 / 1e-139 Tetratricopeptide repeat (TPR)-like superfamily protein (.1) Potri.011G064500 [exp] 276 / 8e-87 AT4G18570 432 / 2e-144 Tetratricopeptide repeat (TPR)-like superfamily protein (.1) Potri.001G460300 [exp] 249 / 2e-75 AT3G25690 345 / 3e-106 Arabidopsis thaliana CHLOROPLAST UNUSUAL POSITIONING 1, Hydroxyproline-rich glycoprotein family protein (.1.2.3) Potri.011G156500 [exp] 243 / 8e-73 AT3G25690 338 / 2e-103 Arabidopsis thaliana CHLOROPLAST UNUSUAL POSITIONING 1, Hydroxyproline-rich glycoprotein family protein (.1.2.3) Potri.010G130800 [exp] 236 / 2e-69 AT3G25690 1030 / 0.0 Arabidopsis thaliana CHLOROPLAST UNUSUAL POSITIONING 1, Hydroxyproline-rich glycoprotein family protein (.1.2.3) Potri.010G003100 [exp] 219 / 7e-66 AT1G48280 356 / 2e-116 hydroxyproline-rich glycoprotein family protein (.1)
PFAM info
Representative CDS sequence Show only first row Show all	>Lus10031863 pacid=23180588 polypeptide=Lus10031863 locus=Lus10031863.g ID=Lus10031863.BGIv1.0 annot-version=v1.0 ATGTTGAAGCAAGAGGAGGAATCGTTGATGCACTACCTGAAGAAAGAAGTTGAAGCAGCTCTTGTGAGGAATGATCAGCTGGAGAGACAAAATCAAGAAC TGAGGCAAGAGGTTGTTCATCTGAAGGCTCAGATCGCTGCCCTCAAAGCGCACGAGAACGAGAGGAAATCGATGCTCTGGAAGAGGTTTCAGAGCTTCAA CGAGGTAAGCAAGAACGATATGTCTCTGCAGAAGCCACAGCAACAACAGCATCTCAAGGTACCAGAAGCCAGTCTAGAACAGTTGAGTTCTAGGCCAAAA TTACCAGAAAGAACGGCGAAAGCAGCATCAAATTTCCCGCCAGCACCACCTCCTCCACCGTCAAAGTTGCTTGTCGGGTCGAGATCGATTCGACGGGTTC CAGAAGTGATTGAGTTCTATCGTGCGGTGACCAAGAAGGATATGAGCATGGACGCGAAGAAGAATCGTGTCGCCACATCAACACTTGCATCAACGACAGA CATGATAGGGGAAATAGAGAACCGTTCGACATATCTTTCTGCTATAAAGTCGGATGTTGAGAAGCAGAAGCAACTGATAACTTCGTTAATCAAAGAAGTG GAGTTGGCAGCTTTTGAGGAAATATCGGAAGTGGAGACGTTCATGAAGAGGCTGGATAATCAGTTATCTTCACTGGTTGATGAAAGGGCAGTGTTGAAGC ATTTCCCACAGTGGCCAGAACAGAAAGTGGATGCTTTGAGGGAAGCTGCTTCCAACTACCGGAGCTTAAGAAACTTGGAGTCTGAGGTCTCGTTGTTCGA GGACAGCCCAAAGGAGCCATTGATGAAAGCTCTAGCAAAGATGCAAGCTTTGCAAGAAAGGTTGGAGAGAAGTGTTAACAGCATCGAGAAGACTAGAGAA AACATGGTGAAGAGATACAAGAGCTTCCAGATCCCTTGGCAATGGCTGCTTAACACAGGATTCCTTGGTCAGATAAAAGTTGGTTCATTGAAGATAGCAA GGGAGTACATGAAGAGGATAAGCAAAGAACTGAAGCTCAATCAAAGCTCAGAGGACAATCTGCTACATCAAGTAGCTAGACTCGCATATAGAGTGCACCA GTTTGCAGGCGGATTTGACACGGAAACCATAAATGTATTCCAAGAACTCAAGAAGGCTGCGATATCATGCCATGAATATGGTCTCGACGAAATCATCTCT TACCCACCGGTTGTTGTACTGATGTAA
AA sequence Show only first row Show all	>Lus10031863 pacid=23180588 polypeptide=Lus10031863 locus=Lus10031863.g ID=Lus10031863.BGIv1.0 annot-version=v1.0 MLKQEEESLMHYLKKEVEAALVRNDQLERQNQELRQEVVHLKAQIAALKAHENERKSMLWKRFQSFNEVSKNDMSLQKPQQQQHLKVPEASLEQLSSRPK LPERTAKAASNFPPAPPPPPSKLLVGSRSIRRVPEVIEFYRAVTKKDMSMDAKKNRVATSTLASTTDMIGEIENRSTYLSAIKSDVEKQKQLITSLIKEV ELAAFEEISEVETFMKRLDNQLSSLVDERAVLKHFPQWPEQKVDALREAASNYRSLRNLESEVSLFEDSPKEPLMKALAKMQALQERLERSVNSIEKTRE NMVKRYKSFQIPWQWLLNTGFLGQIKVGSLKIAREYMKRISKELKLNQSSEDNLLHQVARLAYRVHQFAGGFDTETINVFQELKKAAISCHEYGLDEIIS YPPVVVLM

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DESeq2's median of ratios [FLAX]

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Coexpressed genes

Compare expression of checked genes Schematic diagram [FLAX] Schematic diagram [POPLAR]

*If you select 4 or less genes and then press "compare expression", expression will be shown as a graph. If you select more than 4 genes, expresion will be shown as a heat map.
*Color represents relative expression level among samples for each gene.

At best	At TF class	At alias	At description		Locus	MR	r	Symbol	HYP	R_s2_CTR	R_s2_Fox	R_s4_CTR	R_s4_Fox	R_r1_CTR	R_r1_Fox	R_r3_CTR	R_r3_Fox	R_r1s2_CTR	R_r1s2_Fox	R_r3s2_CTR	R_r3s2_Fox	R_s6_CTR	R_s6_Al4	R_s6_Al12	R_s6_Al24	R_s8_CTR	R_s8_Al4	R_s8_Al12	R_s8_Al24	R_r5_CTR	R_r5_Al4	R_r5_Al12	R_r5_Al24	R_r7_CTR	R_r7_Al4	R_r7_Al12	R_r7_Al24	LEAF_N	LEAF_P	LEAF_NPK	SAM	AR_Bet	AR_rdf	cPAR	TOP_Bet	TOP_rdf	iFIBa	iFIBb	MID_Bet	MID_rdf	tFIBa	tFIB_Gr	tFIB_Li	tFIB_Bi	tFIBb	tFIBb_PUL8	tFIBb_PUL24	tFIBb_PUL96	tFIBb_OPP8	tFIBb_OPP24	tFIBb_OPP96	sXYLa	sXYLb	sXYLb_PUL8	sXYLb_PUL24	sXYLb_PUL96	sXYLb_OPP8	sXYLb_OPP24	sXYLb_OPP96
AT1G07120			unknown protein		Lus10031863 [exp]	0	1
AT4G28500	NAC	ANAC073, SND2, ...	SECONDARY WALL-ASSOCIATED NAC ...		Lus10013967 [exp]	2.4	0.9589
AT4G28500	NAC	ANAC073, SND2, ...	SECONDARY WALL-ASSOCIATED NAC ...		Lus10015392 [exp]	2.4	0.9567
AT5G39785			Protein of unknown function (D...		Lus10036751 [exp]	3.7	0.9346
AT5G39785			Protein of unknown function (D...		Lus10037176 [exp]	4.6	0.9453
AT1G27920		MAP65-8	microtubule-associated protein...		Lus10015789 [exp]	5.1	0.9577
AT1G29200			O-fucosyltransferase family pr...		Lus10007290 [exp]	8.0	0.9322
AT5G45840			Leucine-rich repeat protein ki...		Lus10031860 [exp]	8.5	0.9542
AT5G55970			RING/U-box superfamily protein...		Lus10022567 [exp]	8.8	0.9481
AT1G63300			Myosin heavy chain-related pro...		Lus10001482 [exp]	9.9	0.9165
AT1G63300			Myosin heavy chain-related pro...		Lus10008482 [exp]	10.4	0.9434

Compare expression of checked genes

Lus10031863 coexpression network

*The number of genes in the network is adjusted within 50 genes.
*Gene name represents symbol(s) of closest Arabidopsis gene if symbol(s) for the gene itself doesn't exist.
*Circle diameter represents the number of connection with other genes within this network.
*Color for gene name represents subnetwork based on the result of network clustering.