Plant FIBer expression Database

External link	JGI Phytozome v13 [genome browser]
Symbol
Arabidopsis homologues Show only best Show top 10	Locus ID BLAST score/e-value TF class Alias TAIR10 short description AT5G58520 766 / 0 Protein kinase superfamily protein (.1) AT5G07140 696 / 0 Protein kinase superfamily protein (.1) AT2G17700 162 / 6e-43 STY8 serine/threonine/tyrosine kinase 8, ACT-like protein tyrosine kinase family protein (.1) AT4G35780 162 / 1e-42 STY17 serine/threonine/tyrosine kinase 17, ACT-like protein tyrosine kinase family protein (.1) AT4G38470 151 / 6e-39 STY46 serine/threonine/tyrosine kinase 46, ACT-like protein tyrosine kinase family protein (.1) AT5G58950 148 / 4e-38 Protein kinase superfamily protein (.1) AT4G31170 138 / 1e-35 Protein kinase superfamily protein (.1.2.3.4) AT1G62400 132 / 7e-34 HT1 high leaf temperature 1, Protein kinase superfamily protein (.1) AT2G24360 132 / 3e-33 Protein kinase superfamily protein (.1) AT4G14780 123 / 1e-30 Protein kinase superfamily protein (.1)
Paralogs Show only best Show top 10	Gene ID BLAST score/e-value At best hit BLAST score/e-value TAIR10 short description Lus10031294 [exp] 1072 / 0 AT5G58520 801 / 0.0 Protein kinase superfamily protein (.1) Lus10022653 [exp] 157 / 2e-41 AT4G38470 673 / 0.0 serine/threonine/tyrosine kinase 46, ACT-like protein tyrosine kinase family protein (.1) Lus10023989 [exp] 157 / 4e-41 AT4G38470 771 / 0.0 serine/threonine/tyrosine kinase 46, ACT-like protein tyrosine kinase family protein (.1) Lus10025092 [exp] 159 / 8e-41 AT1G78610 779 / 0.0 mechanosensitive channel of small conductance-like 6 (.1) Lus10012517 [exp] 156 / 2e-40 AT4G35780 754 / 0.0 serine/threonine/tyrosine kinase 17, ACT-like protein tyrosine kinase family protein (.1) Lus10025442 [exp] 147 / 4e-38 AT5G58950 510 / 2e-178 Protein kinase superfamily protein (.1) Lus10020374 [exp] 141 / 1e-36 AT4G31170 697 / 0.0 Protein kinase superfamily protein (.1.2.3.4) Lus10004153 [exp] 145 / 4e-36 AT2G17700 611 / 0.0 serine/threonine/tyrosine kinase 8, ACT-like protein tyrosine kinase family protein (.1) Lus10015436 [exp] 141 / 4e-36 AT5G58950 572 / 0.0 Protein kinase superfamily protein (.1)
Poplar homologues Show only best Show top 10	Locus ID BLAST score/e-value At best hit BLAST score/e-value TAIR10 short description Potri.001G280700 [exp] 834 / 0 AT5G58520 800 / 0.0 Protein kinase superfamily protein (.1) Potri.009G075900 [exp] 826 / 0 AT5G58520 787 / 0.0 Protein kinase superfamily protein (.1) Potri.002G015400 [exp] 162 / 4e-43 AT4G38470 650 / 0.0 serine/threonine/tyrosine kinase 46, ACT-like protein tyrosine kinase family protein (.1) Potri.004G179457 [exp] 159 / 8e-43 AT4G38470 654 / 0.0 serine/threonine/tyrosine kinase 46, ACT-like protein tyrosine kinase family protein (.1) Potri.004G179100 [exp] 158 / 3e-42 AT4G35780 612 / 0.0 serine/threonine/tyrosine kinase 17, ACT-like protein tyrosine kinase family protein (.1) Potri.004G179514 [exp] 159 / 5e-42 AT4G38470 786 / 0.0 serine/threonine/tyrosine kinase 46, ACT-like protein tyrosine kinase family protein (.1) Potri.005G246500 [exp] 159 / 9e-42 AT4G38470 645 / 0.0 serine/threonine/tyrosine kinase 46, ACT-like protein tyrosine kinase family protein (.1) Potri.002G070000 [exp] 157 / 2e-41 AT4G38470 498 / 1e-171 serine/threonine/tyrosine kinase 46, ACT-like protein tyrosine kinase family protein (.1) Potri.005G106200 [exp] 157 / 5e-41 AT4G35780 821 / 0.0 serine/threonine/tyrosine kinase 17, ACT-like protein tyrosine kinase family protein (.1) Potri.007G060600 [exp] 157 / 7e-41 AT4G35780 793 / 0.0 serine/threonine/tyrosine kinase 17, ACT-like protein tyrosine kinase family protein (.1)
PFAM info	Clan ID Clan name Pfam ID Pfam name Pfam description CL0016 [flax] [poplar] PKinase PF07714 [flax] [poplar] PK_Tyr_Ser-Thr Protein tyrosine and serine/threonine kinase
Representative CDS sequence Show only first row Show all	>Lus10031864 pacid=23180743 polypeptide=Lus10031864 locus=Lus10031864.g ID=Lus10031864.BGIv1.0 annot-version=v1.0 ATGGCTGCAGCGCTGGAATGTTGGTCCAGCAGCAAGGCGGCGAAGAGCACCGCTTCCGCTGCCGACGAGGACATGGTGGAGCAAGTCCTGATGGGTTCCA ATAACAGATCCGAATCAGCTCCGGATCACCACGATAGGGATCCTTCCTCCTCAGGGATGCAGAAGCGGTTTCAGAAGCTATCTCGCAACGTCTCTGAAGC CATCTCCTCGATTAAGAATTCACTCAATCTCGATTCCGTTCGAGAAATCCACCACCACCAGCTGCAGGGAGGGGTTGGTAATGGTAAAGGAAGAGTTGAT CAGAGCTGCCGGAAGCTTGTTTGGGCTACCGTTGTACGGAATCTGACCCAGTTGTATCCAGGGAGCCAGCTTCCGGAGAAGCTCGTTTCCAGTATAAAAA AGCATTACGATTCCTTGCCATTGAGTTATGCACAGGCGGAATTCGACATGAAAGAAGTGTTCCTCCACATGAAATTGATGGAGCAGGCGGTAGCCGATGA TCATCCTTCGATGATGCTTCACGAGGTTTCCGACGATGACGTACACGGTACTGTATTCAAGCTTACGTTCGCTTGCAACTCTCCGATTTCCTGGCCTGCG ATGTCCGGCGCATTAGACAGTGCCTCGATGTGTTGCAAGAAGATCCAGATCTTCGAAAAGAAAGGTTTCACATTGGGAGTGGTTCTTCTTTTGGTTCAAG CCGGTCAGGAGAGGCTGTTCAAGGCTAGGATCGAGAGCGCTTTGAAATTCGCTGCAAAGAAGCCGAAATCGAACTCGGTCAAGCTTTCGTTTGGACTATG TGGATGCCAGGAGGAGAATTCTAAAGGTAGGGAGTTTGGGGAGATCGAAGAGGATCCTTGTGATCATGTTAGTTATAGAAATGGGATCATCCAGCTCGAA ATGCCATTATCCAGCTCGAAATTCGTTGTATCGGTAGACGAATGGCAGACGGTTCAGTCTGGTGGCGAGGATCTCGGAAAATGGCTTCTGAATCATGACA GCCTAGAGTTCACCGATCAGGTCGGTCCGACCTCGTTCAAAGGAGTGTACAAGGGGAAAAAAATCGGGATCGAGAAGCTGAAAGGTTACGAGAAGGGGAA CTCGTACGACTTCGAAGTCCGTAGAGACCTCCTCGAGCTGATGACTTGCGGGCATAAGAACGTCCTGCAGTTTCACGGCGTGTGTGTCGACGACACCCAC GGATTGTGCGTGGTCACGAAGCTGATGGACGGTGGCTCTGTCAACGAGCTGATGTTCAAGAGCAAGAATAATAAGCTTCAAAATAAGGAGATACTGAGGA TTGCTGTTGATGTAGCGGAAGGGCTCAGGTTCTTGAACGATCATGGCGTGGCGTTTCGAGATCTGAACACGCAGAGGATTCTGTTGGATAGACATGGCAA TGCTTGCTTGGGCGACGTAGGTATCGTGTCCGCTTGCAAGAATGCTGGCGAGGCGCTCGAGTACGAAACCGATGGCTACCGATGGCTAGCCCCAGAGATA ATAGCAGGAGACCCGGAGTCGGTCTCTGAGACATGGATGAGCAACGTGTACAGTTTCGGGATGGTGATATGGGAGATGGTGACCGGCGAGGCTGCCTATG GTTCGTGCTCCCCCGTGCAGGCCGCAGTCGGTATAGCTGCTTGTGGACTCAGACCTGAGATCCCTAAGGATTGCCCGCAAATCCTTAGGTCTCTGATGAC CAAGTGCTGGAACAACGTCCCCTTGAAGCGGCCGAATTTCGACGAGATCCTGTCGGTTTTGCTGCAGTGCTACAACAACAAACAACAATTCTTGTAG
AA sequence Show only first row Show all	>Lus10031864 pacid=23180743 polypeptide=Lus10031864 locus=Lus10031864.g ID=Lus10031864.BGIv1.0 annot-version=v1.0 MAAALECWSSSKAAKSTASAADEDMVEQVLMGSNNRSESAPDHHDRDPSSSGMQKRFQKLSRNVSEAISSIKNSLNLDSVREIHHHQLQGGVGNGKGRVD QSCRKLVWATVVRNLTQLYPGSQLPEKLVSSIKKHYDSLPLSYAQAEFDMKEVFLHMKLMEQAVADDHPSMMLHEVSDDDVHGTVFKLTFACNSPISWPA MSGALDSASMCCKKIQIFEKKGFTLGVVLLLVQAGQERLFKARIESALKFAAKKPKSNSVKLSFGLCGCQEENSKGREFGEIEEDPCDHVSYRNGIIQLE MPLSSSKFVVSVDEWQTVQSGGEDLGKWLLNHDSLEFTDQVGPTSFKGVYKGKKIGIEKLKGYEKGNSYDFEVRRDLLELMTCGHKNVLQFHGVCVDDTH GLCVVTKLMDGGSVNELMFKSKNNKLQNKEILRIAVDVAEGLRFLNDHGVAFRDLNTQRILLDRHGNACLGDVGIVSACKNAGEALEYETDGYRWLAPEI IAGDPESVSETWMSNVYSFGMVIWEMVTGEAAYGSCSPVQAAVGIAACGLRPEIPKDCPQILRSLMTKCWNNVPLKRPNFDEILSVLLQCYNNKQQFL

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DESeq2's median of ratios [FLAX]

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Coexpressed genes

Compare expression of checked genes Schematic diagram [FLAX] Schematic diagram [POPLAR]

*If you select 4 or less genes and then press "compare expression", expression will be shown as a graph. If you select more than 4 genes, expresion will be shown as a heat map.
*Color represents relative expression level among samples for each gene.

At best	At TF class	At alias	At description		Locus	MR	r	Symbol	HYP	R_s2_CTR	R_s2_Fox	R_s4_CTR	R_s4_Fox	R_r1_CTR	R_r1_Fox	R_r3_CTR	R_r3_Fox	R_r1s2_CTR	R_r1s2_Fox	R_r3s2_CTR	R_r3s2_Fox	R_s6_CTR	R_s6_Al4	R_s6_Al12	R_s6_Al24	R_s8_CTR	R_s8_Al4	R_s8_Al12	R_s8_Al24	R_r5_CTR	R_r5_Al4	R_r5_Al12	R_r5_Al24	R_r7_CTR	R_r7_Al4	R_r7_Al12	R_r7_Al24	LEAF_N	LEAF_P	LEAF_NPK	SAM	AR_Bet	AR_rdf	cPAR	TOP_Bet	TOP_rdf	iFIBa	iFIBb	MID_Bet	MID_rdf	tFIBa	tFIB_Gr	tFIB_Li	tFIB_Bi	tFIBb	tFIBb_PUL8	tFIBb_PUL24	tFIBb_PUL96	tFIBb_OPP8	tFIBb_OPP24	tFIBb_OPP96	sXYLa	sXYLb	sXYLb_PUL8	sXYLb_PUL24	sXYLb_PUL96	sXYLb_OPP8	sXYLb_OPP24	sXYLb_OPP96
AT5G58520			Protein kinase superfamily pro...		Lus10031864 [exp]	0	1
AT1G10790			unknown protein		Lus10022968 [exp]	2.0	0.8834
AT3G56590			hydroxyproline-rich glycoprote...		Lus10001613 [exp]	3.9	0.8620
AT5G59350			unknown protein		Lus10023421 [exp]	7.1	0.8196
AT4G11090		TBL23	TRICHOME BIREFRINGENCE-LIKE 23...		Lus10033950 [exp]	7.6	0.8738
AT5G03340			ATPase, AAA-type, CDC48 protei...		Lus10016123 [exp]	9.4	0.8331
AT3G05675			BTB/POZ domain-containing prot...		Lus10033220 [exp]	12.5	0.8351
AT3G22550			Protein of unknown function (D...		Lus10010568 [exp]	15.8	0.8370
AT1G67410			Exostosin family protein (.1)		Lus10015791 [exp]	17.3	0.8335
AT1G80530			Major facilitator superfamily ...		Lus10041962 [exp]	17.3	0.8448
AT4G17615		ATCBL1, SCABP5,...	SOS3-LIKE CALCIUM BINDING PROT...		Lus10011028 [exp]	19.7	0.7913

Compare expression of checked genes

Lus10031864 coexpression network

*The number of genes in the network is adjusted within 50 genes.
*Gene name represents symbol(s) of closest Arabidopsis gene if symbol(s) for the gene itself doesn't exist.
*Circle diameter represents the number of connection with other genes within this network.
*Color for gene name represents subnetwork based on the result of network clustering.