Plant FIBer expression Database

External link	JGI Phytozome v13 [genome browser]
Symbol
Arabidopsis homologues Show only best Show top 10	Locus ID BLAST score/e-value TF class Alias TAIR10 short description AT1G73340 625 / 0 Cytochrome P450 superfamily protein (.1) AT3G50660 301 / 1e-96 PSC1, CYP90B1, CLM, SNP2, DWF4, SAV1 SUPPRESSOR OF NPH4 2, SHADE AVOIDANCE 1, PARTIALLY SUPPRESSING COI1 INSENSITIVITY TO JA 1, DWARF 4, CYTOCHROME P450 90B1, CLOMAZONE-RESISTANT, Cytochrome P450 superfamily protein (.1) AT3G13730 283 / 1e-89 CYP90D1 "cytochrome P450, family 90, subfamily D, polypeptide 1", cytochrome P450, family 90, subfamily D, polypeptide 1 (.1) AT5G05690 278 / 5e-88 CBB3, DWF3, CYP90A1, CYP90A, CPD DWARF 3, CYTOCHROME P450 90A1, CONSTITUTIVE PHOTOMORPHOGENIC DWARF, CABBAGE 3, Cytochrome P450 superfamily protein (.1.2.3) AT4G36380 261 / 5e-81 ROT3 ROTUNDIFOLIA 3, Cytochrome P450 superfamily protein (.1) AT1G12740 233 / 1e-70 CYP87A2 "cytochrome P450, family 87, subfamily A, polypeptide 2", cytochrome P450, family 87, subfamily A, polypeptide 2 (.1.2) AT3G30180 229 / 2e-69 CYP85A2, BR6OX2 brassinosteroid-6-oxidase 2 (.1) AT5G45340 226 / 3e-68 CYP707A3 "cytochrome P450, family 707, subfamily A, polypeptide 3", cytochrome P450, family 707, subfamily A, polypeptide 3 (.1.2) AT4G19230 223 / 4e-67 CYP707A1 "cytochrome P450, family 707, subfamily A, polypeptide 1", cytochrome P450, family 707, subfamily A, polypeptide 1 (.1.2) AT5G14400 217 / 6e-66 CYP724A1 "cytochrome P450, family 724, subfamily A, polypeptide 1", cytochrome P450, family 724, subfamily A, polypeptide 1 (.1)
Paralogs Show only best Show top 10	Gene ID BLAST score/e-value At best hit BLAST score/e-value TAIR10 short description Lus10031295 [exp] 941 / 0 AT1G73340 624 / 0.0 Cytochrome P450 superfamily protein (.1) Lus10016065 [exp] 273 / 1e-85 AT3G50660 399 / 3e-134 SUPPRESSOR OF NPH4 2, SHADE AVOIDANCE 1, PARTIALLY SUPPRESSING COI1 INSENSITIVITY TO JA 1, DWARF 4, CYTOCHROME P450 90B1, CLOMAZONE-RESISTANT, Cytochrome P450 superfamily protein (.1) Lus10040193 [exp] 269 / 2e-84 AT5G05690 687 / 0.0 DWARF 3, CYTOCHROME P450 90A1, CONSTITUTIVE PHOTOMORPHOGENIC DWARF, CABBAGE 3, Cytochrome P450 superfamily protein (.1.2.3) Lus10014850 [exp] 261 / 2e-81 AT5G05690 679 / 0.0 DWARF 3, CYTOCHROME P450 90A1, CONSTITUTIVE PHOTOMORPHOGENIC DWARF, CABBAGE 3, Cytochrome P450 superfamily protein (.1.2.3) Lus10024016 [exp] 252 / 3e-78 AT3G50660 643 / 0.0 SUPPRESSOR OF NPH4 2, SHADE AVOIDANCE 1, PARTIALLY SUPPRESSING COI1 INSENSITIVITY TO JA 1, DWARF 4, CYTOCHROME P450 90B1, CLOMAZONE-RESISTANT, Cytochrome P450 superfamily protein (.1) Lus10003650 [exp] 246 / 6e-76 AT5G14400 353 / 3e-119 "cytochrome P450, family 724, subfamily A, polypeptide 1", cytochrome P450, family 724, subfamily A, polypeptide 1 (.1) Lus10028345 [exp] 244 / 1e-74 AT4G36380 652 / 0.0 ROTUNDIFOLIA 3, Cytochrome P450 superfamily protein (.1) Lus10041794 [exp] 240 / 4e-73 AT4G36380 643 / 0.0 ROTUNDIFOLIA 3, Cytochrome P450 superfamily protein (.1) Lus10024495 [exp] 237 / 3e-72 AT1G12740 751 / 0.0 "cytochrome P450, family 87, subfamily A, polypeptide 2", cytochrome P450, family 87, subfamily A, polypeptide 2 (.1.2)
Poplar homologues Show only best Show top 10	Locus ID BLAST score/e-value At best hit BLAST score/e-value TAIR10 short description Potri.017G154600 [exp] 681 / 0 AT1G73340 714 / 0.0 Cytochrome P450 superfamily protein (.1) Potri.007G026500 [exp] 313 / 2e-101 AT3G50660 757 / 0.0 SUPPRESSOR OF NPH4 2, SHADE AVOIDANCE 1, PARTIALLY SUPPRESSING COI1 INSENSITIVITY TO JA 1, DWARF 4, CYTOCHROME P450 90B1, CLOMAZONE-RESISTANT, Cytochrome P450 superfamily protein (.1) Potri.005G124000 [exp] 304 / 9e-98 AT3G50660 738 / 0.0 SUPPRESSOR OF NPH4 2, SHADE AVOIDANCE 1, PARTIALLY SUPPRESSING COI1 INSENSITIVITY TO JA 1, DWARF 4, CYTOCHROME P450 90B1, CLOMAZONE-RESISTANT, Cytochrome P450 superfamily protein (.1) Potri.010G189800 [exp] 289 / 2e-92 AT5G05690 717 / 0.0 DWARF 3, CYTOCHROME P450 90A1, CONSTITUTIVE PHOTOMORPHOGENIC DWARF, CABBAGE 3, Cytochrome P450 superfamily protein (.1.2.3) Potri.003G038200 [exp] 287 / 3e-91 AT3G13730 662 / 0.0 "cytochrome P450, family 90, subfamily D, polypeptide 1", cytochrome P450, family 90, subfamily D, polypeptide 1 (.1) Potri.008G067500 [exp] 282 / 1e-89 AT5G05690 710 / 0.0 DWARF 3, CYTOCHROME P450 90A1, CONSTITUTIVE PHOTOMORPHOGENIC DWARF, CABBAGE 3, Cytochrome P450 superfamily protein (.1.2.3) Potri.001G200100 [exp] 281 / 8e-89 AT3G13730 663 / 0.0 "cytochrome P450, family 90, subfamily D, polypeptide 1", cytochrome P450, family 90, subfamily D, polypeptide 1 (.1) Potri.014G171700 [exp] 270 / 5e-85 AT3G50660 408 / 1e-138 SUPPRESSOR OF NPH4 2, SHADE AVOIDANCE 1, PARTIALLY SUPPRESSING COI1 INSENSITIVITY TO JA 1, DWARF 4, CYTOCHROME P450 90B1, CLOMAZONE-RESISTANT, Cytochrome P450 superfamily protein (.1) Potri.001G341000 [exp] 269 / 2e-84 AT5G14400 424 / 6e-147 "cytochrome P450, family 724, subfamily A, polypeptide 1", cytochrome P450, family 724, subfamily A, polypeptide 1 (.1) Potri.007G018400 [exp] 267 / 2e-83 AT4G36380 626 / 0.0 ROTUNDIFOLIA 3, Cytochrome P450 superfamily protein (.1)
PFAM info	Clan ID Clan name Pfam ID Pfam name Pfam description PF00067 [flax] [poplar] p450 Cytochrome P450
Representative CDS sequence Show only first row Show all	>Lus10031866 pacid=23180584 polypeptide=Lus10031866 locus=Lus10031866.g ID=Lus10031866.BGIv1.0 annot-version=v1.0 ATGGAGTTCCAAAATCCCACCGCAGTCTTCCTCTCAACACTACTCTTCCTAATCTGCTTATCCACCTTCATCTTTTTCCGCCGCCAATCTCAAAACAACA ACCACACTGAAAAACGGAGTCGGCTCCCGCCGGGGAGCAGAGGATGGCCGGTGATTGGCGACAGCTTCAGCTGGTACAATGCGGTACTGGGTTCCCACCC GCCGGACTTCGTCGAGAAGCAGGTGGCACGGTTCGGGAGTAAGGTGTTCTCGTGCAGGCTGTTCGGCGGGTACTGGGCGGTTGTGTCGGCCGACCCAGGG TTCAACCGGTTCGTGATGCAGAGCGAAGGGCGGCTGTTCAAATCGAGCTACCCGAAACCGTTTCGTGATCTGGTTGGGAAGAACGGGGTGGTTACTGCTC AAGGCGAGCAACAGAGGAAGCTCCACGGGATTGCTTCCGGTTTGATGAAGGTAGAGCGGTTAAACCGGACCGATTTTGTTGAGGAGATTCAGTCGGTTAT GATTCGGACTCTGGGTAATTGCTCCGGCGACGGTGACCGGGTCATTTGCCTGCAGGATCTTTGTAGAAAGGTGGCAATCAATCTAATGGTGAACCAGTTG TTGGGCGTGTCGTCGGACATGGAAGTCGATGAAATGGCGCTGCTGTTCTCCGACTTCGTGGACGGCTGTCTCTCCGTTCCCGTCAATTTGCCTGGCTTTG CTTACCATACAGCTATGAAGGCAAGGGAGAAAATCACGAGCAAGATAAACAAGGTAGTAGACAAAACCAGAGGTGCAGAAGCCTCCTGGGAGGAGGATAC TTGCGGTGCAAGTAAGGGTTTGCTCGGGCGGGTATTGAAGGAAGGAAGCATCGAAGACGATGCGATTCCGGACTTCATCATCAATCTTCTCTTTGCCGGC AACGAAACCACCGCCAAGACGATGGTTTTCGCCCTTTACTTCCTCACTCGCTGCCCGAAGGCAATGCAGCAACTCCTGGAGGAACAAAATGGTCTTAGAT GCGGCCGGATGCTCACTTGGGATGATTATAAAGCCATGCACTTCACTCAATGTGTAATTGATGAGACACTACGACTTGGGGGCATAGCAATTTGGCTATT CAGGGAGGCTATAGAAGACGTATCATATGAAGATTACGTTATCCCGAAAGGAAGCTTAGTCGTCCCATTCTTATCGGCGGTCCATCTGGATGAAAAATTG TACGACGAAGCTCGCACATTCAATCCATGGAGATGGACGGAGCCTCAAAATCAGGGCAAGATAAACTGGAGGAGTAGTCCGTATTTTACACCGTTCGGGG CAGGAGCTCGGTTCTGCCCCGGAGCAGAGCTGGCTCGTCTCCAGATTGCTCTGTTTCTGCATTACTTCGTCACAACTTACAGGTGGTCGCAAGTGAAAGA AGATAGAATGTCGTTCTTCCCCTCTGCTCGTCTAGTGAATGGCTTCCAGATTTGGTTGTGTAGACGGCAAGAGGGGGAAGAACCCGAATTAGACTTGCAA CGCACGTAA
AA sequence Show only first row Show all	>Lus10031866 pacid=23180584 polypeptide=Lus10031866 locus=Lus10031866.g ID=Lus10031866.BGIv1.0 annot-version=v1.0 MEFQNPTAVFLSTLLFLICLSTFIFFRRQSQNNNHTEKRSRLPPGSRGWPVIGDSFSWYNAVLGSHPPDFVEKQVARFGSKVFSCRLFGGYWAVVSADPG FNRFVMQSEGRLFKSSYPKPFRDLVGKNGVVTAQGEQQRKLHGIASGLMKVERLNRTDFVEEIQSVMIRTLGNCSGDGDRVICLQDLCRKVAINLMVNQL LGVSSDMEVDEMALLFSDFVDGCLSVPVNLPGFAYHTAMKAREKITSKINKVVDKTRGAEASWEEDTCGASKGLLGRVLKEGSIEDDAIPDFIINLLFAG NETTAKTMVFALYFLTRCPKAMQQLLEEQNGLRCGRMLTWDDYKAMHFTQCVIDETLRLGGIAIWLFREAIEDVSYEDYVIPKGSLVVPFLSAVHLDEKL YDEARTFNPWRWTEPQNQGKINWRSSPYFTPFGAGARFCPGAELARLQIALFLHYFVTTYRWSQVKEDRMSFFPSARLVNGFQIWLCRRQEGEEPELDLQ RT

---

DESeq2's median of ratios [FLAX]

Order by: Tissue Experiment Show only core collection Show again Show schematic diagram

---

Coexpressed genes

Compare expression of checked genes Schematic diagram [FLAX] Schematic diagram [POPLAR]

*If you select 4 or less genes and then press "compare expression", expression will be shown as a graph. If you select more than 4 genes, expresion will be shown as a heat map.
*Color represents relative expression level among samples for each gene.

At best	At TF class	At alias	At description		Locus	MR	r	Symbol	HYP	R_s2_CTR	R_s2_Fox	R_s4_CTR	R_s4_Fox	R_r1_CTR	R_r1_Fox	R_r3_CTR	R_r3_Fox	R_r1s2_CTR	R_r1s2_Fox	R_r3s2_CTR	R_r3s2_Fox	R_s6_CTR	R_s6_Al4	R_s6_Al12	R_s6_Al24	R_s8_CTR	R_s8_Al4	R_s8_Al12	R_s8_Al24	R_r5_CTR	R_r5_Al4	R_r5_Al12	R_r5_Al24	R_r7_CTR	R_r7_Al4	R_r7_Al12	R_r7_Al24	LEAF_N	LEAF_P	LEAF_NPK	SAM	AR_Bet	AR_rdf	cPAR	TOP_Bet	TOP_rdf	iFIBa	iFIBb	MID_Bet	MID_rdf	tFIBa	tFIB_Gr	tFIB_Li	tFIB_Bi	tFIBb	tFIBb_PUL8	tFIBb_PUL24	tFIBb_PUL96	tFIBb_OPP8	tFIBb_OPP24	tFIBb_OPP96	sXYLa	sXYLb	sXYLb_PUL8	sXYLb_PUL24	sXYLb_PUL96	sXYLb_OPP8	sXYLb_OPP24	sXYLb_OPP96
AT1G73340			Cytochrome P450 superfamily pr...		Lus10031866 [exp]	0	1
AT5G25900		ATKO1, CYP701A3...	CYTOCHROME P450 701 A3, ARABID...		Lus10011667 [exp]	3.7	0.7434
AT1G78520			Carbohydrate-binding X8 domain...		Lus10042492 [exp]	6.9	0.7084
					Lus10025138 [exp]	11.8	0.6878
AT5G41140			Myosin heavy chain-related pro...		Lus10024517 [exp]	12.4	0.7135
AT1G58280			Phosphoglycerate mutase family...		Lus10032821 [exp]	26.7	0.6748
AT5G38530		TSBtype2	tryptophan synthase beta type ...		Lus10000306 [exp]	36.4	0.6250
AT1G78520			Carbohydrate-binding X8 domain...		Lus10026175 [exp]	38.5	0.6681
AT5G60870		RUG3	RCC1/UVR8/GEF-like 3, Regulato...		Lus10042215 [exp]	56.4	0.6379
AT5G52140			RING/U-box superfamily protein...		Lus10005768 [exp]	84.7	0.5855
AT5G14180		MPL1	Myzus persicae-induced lipase ...		Lus10015063 [exp]	85.1	0.6105

Compare expression of checked genes

Lus10031866 coexpression network

*The number of genes in the network is adjusted within 50 genes.
*Gene name represents symbol(s) of closest Arabidopsis gene if symbol(s) for the gene itself doesn't exist.
*Circle diameter represents the number of connection with other genes within this network.
*Color for gene name represents subnetwork based on the result of network clustering.