Plant FIBer expression Database

External link	JGI Phytozome v13 [genome browser]
Symbol
Arabidopsis homologues Show only best Show top 10	Locus ID BLAST score/e-value TF class Alias TAIR10 short description AT5G09280 278 / 6e-94 Pectin lyase-like superfamily protein (.1) AT1G30350 209 / 5e-66 Pectin lyase-like superfamily protein (.1) AT4G22090 207 / 4e-65 Pectin lyase-like superfamily protein (.1) AT4G22080 206 / 1e-64 RHS14 root hair specific 14 (.1) AT1G11920 204 / 9e-64 Pectin lyase-like superfamily protein (.1) AT3G24230 194 / 2e-59 Pectate lyase family protein (.1) AT4G13210 186 / 7e-57 Pectin lyase-like superfamily protein (.1.2) AT5G04310 189 / 1e-56 Pectin lyase-like superfamily protein (.1) AT1G67750 184 / 8e-56 Pectate lyase family protein (.1) AT5G55720 183 / 1e-55 Pectin lyase-like superfamily protein (.1)
Paralogs Show only best Show top 10	Gene ID BLAST score/e-value At best hit BLAST score/e-value TAIR10 short description Lus10031296 [exp] 258 / 1e-88 AT5G09280 236 / 9e-80 Pectin lyase-like superfamily protein (.1) Lus10011258 [exp] 212 / 9e-67 AT1G11920 549 / 0.0 Pectin lyase-like superfamily protein (.1) Lus10018430 [exp] 210 / 6e-66 AT1G11920 525 / 0.0 Pectin lyase-like superfamily protein (.1) Lus10011257 [exp] 208 / 5e-65 AT1G11920 530 / 0.0 Pectin lyase-like superfamily protein (.1) Lus10023542 [exp] 192 / 4e-58 AT5G04310 579 / 0.0 Pectin lyase-like superfamily protein (.1) Lus10037945 [exp] 188 / 8e-55 AT3G54920 599 / 0.0 powdery mildew resistant 6, Pectin lyase-like superfamily protein (.1) Lus10022310 [exp] 179 / 5e-54 AT5G63180 626 / 0.0 Pectin lyase-like superfamily protein (.1) Lus10038157 [exp] 179 / 1e-53 AT4G13710 685 / 0.0 Pectin lyase-like superfamily protein (.1.2) Lus10011400 [exp] 178 / 1e-53 AT1G67750 623 / 0.0 Pectate lyase family protein (.1)
Poplar homologues Show only best Show top 10	Locus ID BLAST score/e-value At best hit BLAST score/e-value TAIR10 short description Potri.003G218200 [exp] 358 / 2e-124 AT5G09280 414 / 2e-145 Pectin lyase-like superfamily protein (.1) Potri.001G007400 [exp] 354 / 4e-123 AT5G09280 416 / 2e-146 Pectin lyase-like superfamily protein (.1) Potri.011G008000 [exp] 213 / 3e-67 AT4G22080 540 / 0.0 root hair specific 14 (.1) Potri.004G007300 [exp] 209 / 8e-66 AT4G22080 489 / 1e-173 root hair specific 14 (.1) Potri.011G008100 [exp] 204 / 1e-63 AT4G22080 504 / 2e-179 root hair specific 14 (.1) Potri.010G229000 [exp] 182 / 4e-54 AT5G04310 583 / 0.0 Pectin lyase-like superfamily protein (.1) Potri.011G093400 [exp] 179 / 6e-54 AT5G63180 509 / 0.0 Pectin lyase-like superfamily protein (.1) Potri.001G339500 [exp] 176 / 9e-53 AT4G24780 617 / 0.0 Pectin lyase-like superfamily protein (.1.2) Potri.008G032700 [exp] 177 / 2e-52 AT5G04310 556 / 0.0 Pectin lyase-like superfamily protein (.1) Potri.015G087800 [exp] 174 / 5e-52 AT5G63180 657 / 0.0 Pectin lyase-like superfamily protein (.1)
PFAM info	Clan ID Clan name Pfam ID Pfam name Pfam description CL0268 [flax] [poplar] Pec_lyase-like PF00544 [flax] [poplar] Pectate_lyase_4 Pectate lyase
Representative CDS sequence Show only first row Show all	>Lus10031867 pacid=23180628 polypeptide=Lus10031867 locus=Lus10031867.g ID=Lus10031867.BGIv1.0 annot-version=v1.0 ATGGAAATCAAGCTTCAGAAGCCCCTCTTGATAAGTAGCTACACTGCCTTCGATGGTCGTGGGGTTGATGTCCACATACAGATGATGCATGTCTCGTTGT TTACAAGGCTAGCAATGTCATTATCCATGGGCTACACATCCATCACGGAGCCATGGAAAGTCCTACCACTAGGAGCCATGGACGGAGACGCCATCCGATT GGTGACGGCCCACAAAGTTTGGATAGACCACAACACACTCTACTCTTGCCAAGATGGTTTGCTCGACATGACCCATGGTTCGACCAACGTGACCATTTCC AACGACTGGTTCAGGAACCAAGACAAGGTCATGCTCCTAGGCCACGATGACGGCTATGTTCGAGACAAGGGTATGAAGGTTACGGTTTTGCTGAACCATT TCGGCCCGAATTGTAACCAACGCATGCCTAGGGTTCGACATGGATATGCACATGTTGCGAACAACTTATACCAAGGATGGACCCAATATGCAATTGGTGG AAGCATGAACCCGATCATCAAGAGTGAATCTAATTACTTTATTGCCCCTACCGGAAGAAAAGAGGTGACATGGAGAAACGGAGTCGATGGGAAGGATGAG CCGTGGAGCTTCTACTCGGTGAACGACTACTTCGAGAACGGGGCTAACTTTGACGAAACTGGGGAAGGCGGAGCCAAGCCTAACTACGACAGCGACCAGA AGTTCAAGGTTGCTGTCGCTCAAACTGTCAAGAACTTGACTTCCTCCGCCGGTGCTCTCGCTTAA
AA sequence Show only first row Show all	>Lus10031867 pacid=23180628 polypeptide=Lus10031867 locus=Lus10031867.g ID=Lus10031867.BGIv1.0 annot-version=v1.0 MEIKLQKPLLISSYTAFDGRGVDVHIQMMHVSLFTRLAMSLSMGYTSITEPWKVLPLGAMDGDAIRLVTAHKVWIDHNTLYSCQDGLLDMTHGSTNVTIS NDWFRNQDKVMLLGHDDGYVRDKGMKVTVLLNHFGPNCNQRMPRVRHGYAHVANNLYQGWTQYAIGGSMNPIIKSESNYFIAPTGRKEVTWRNGVDGKDE PWSFYSVNDYFENGANFDETGEGGAKPNYDSDQKFKVAVAQTVKNLTSSAGALA

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DESeq2's median of ratios [FLAX]

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Coexpressed genes

Compare expression of checked genes Schematic diagram [FLAX] Schematic diagram [POPLAR]

*If you select 4 or less genes and then press "compare expression", expression will be shown as a graph. If you select more than 4 genes, expresion will be shown as a heat map.
*Color represents relative expression level among samples for each gene.

At best	At TF class	At alias	At description		Locus	MR	r	Symbol	HYP	R_s2_CTR	R_s2_Fox	R_s4_CTR	R_s4_Fox	R_r1_CTR	R_r1_Fox	R_r3_CTR	R_r3_Fox	R_r1s2_CTR	R_r1s2_Fox	R_r3s2_CTR	R_r3s2_Fox	R_s6_CTR	R_s6_Al4	R_s6_Al12	R_s6_Al24	R_s8_CTR	R_s8_Al4	R_s8_Al12	R_s8_Al24	R_r5_CTR	R_r5_Al4	R_r5_Al12	R_r5_Al24	R_r7_CTR	R_r7_Al4	R_r7_Al12	R_r7_Al24	LEAF_N	LEAF_P	LEAF_NPK	SAM	AR_Bet	AR_rdf	cPAR	TOP_Bet	TOP_rdf	iFIBa	iFIBb	MID_Bet	MID_rdf	tFIBa	tFIB_Gr	tFIB_Li	tFIB_Bi	tFIBb	tFIBb_PUL8	tFIBb_PUL24	tFIBb_PUL96	tFIBb_OPP8	tFIBb_OPP24	tFIBb_OPP96	sXYLa	sXYLb	sXYLb_PUL8	sXYLb_PUL24	sXYLb_PUL96	sXYLb_OPP8	sXYLb_OPP24	sXYLb_OPP96
AT5G09280			Pectin lyase-like superfamily ...		Lus10031867 [exp]	0	1
					Lus10003272 [exp]	3.6	1.0000
					Lus10010826 [exp]	5.1	1.0000
					Lus10022108 [exp]	6.2	1.0000
AT2G36780			UDP-Glycosyltransferase superf...		Lus10023893 [exp]	7.2	1.0000
AT3G47090			Leucine-rich repeat protein ki...		Lus10028479 [exp]	8.1	1.0000
					Lus10030783 [exp]	8.8	1.0000
AT2G04040		ATDTX1	detoxification 1, MATE efflux ...		Lus10009132 [exp]	9.6	0.8771
					Lus10036152 [exp]	9.9	1.0000
					Lus10037861 [exp]	10.6	1.0000
AT1G24430			HXXXD-type acyl-transferase fa...		Lus10037952 [exp]	11.2	1.0000

Compare expression of checked genes

Lus10031867 coexpression network

*The number of genes in the network is adjusted within 50 genes.
*Gene name represents symbol(s) of closest Arabidopsis gene if symbol(s) for the gene itself doesn't exist.
*Circle diameter represents the number of connection with other genes within this network.
*Color for gene name represents subnetwork based on the result of network clustering.