Plant FIBer expression Database

External link	JGI Phytozome v13 [genome browser]
Symbol
Arabidopsis homologues Show only best Show top 10	Locus ID BLAST score/e-value TF class Alias TAIR10 short description AT1G07110 1024 / 0 FKFBP, ATF2KP, F2KP "fructose-2,6-bisphosphatase", fructose-2,6-bisphosphatase (.1) AT3G30200 65 / 9e-11 Plant transposase (Ptta/En/Spm family) (.1) AT5G04120 50 / 2e-06 Phosphoglycerate mutase family protein (.1)
Paralogs Show only best Show top 10	Gene ID BLAST score/e-value At best hit BLAST score/e-value TAIR10 short description Lus10031299 [exp] 1295 / 0 AT1G07110 1128 / 0.0 "fructose-2,6-bisphosphatase", fructose-2,6-bisphosphatase (.1) Lus10031298 [exp] 1295 / 0 AT1G07110 1129 / 0.0 "fructose-2,6-bisphosphatase", fructose-2,6-bisphosphatase (.1) Lus10042278 [exp] 1119 / 0 AT1G07110 1122 / 0.0 "fructose-2,6-bisphosphatase", fructose-2,6-bisphosphatase (.1) Lus10026380 [exp] 1068 / 0 AT1G07110 1069 / 0.0 "fructose-2,6-bisphosphatase", fructose-2,6-bisphosphatase (.1) Lus10014360 [exp] 46 / 7e-05 AT3G50520 313 / 5e-108 Phosphoglycerate mutase family protein (.1) Lus10026068 [exp] 45 / 0.0002 AT3G50520 312 / 1e-107 Phosphoglycerate mutase family protein (.1)
Poplar homologues Show only best Show top 10	Locus ID BLAST score/e-value At best hit BLAST score/e-value TAIR10 short description Potri.001G279100 [exp] 1128 / 0 AT1G07110 1161 / 0.0 "fructose-2,6-bisphosphatase", fructose-2,6-bisphosphatase (.1) Potri.009G073800 [exp] 1117 / 0 AT1G07110 1170 / 0.0 "fructose-2,6-bisphosphatase", fructose-2,6-bisphosphatase (.1)
PFAM info	Clan ID Clan name Pfam ID Pfam name Pfam description CL0023 [flax] [poplar] P-loop_NTPase PF01591 [flax] [poplar] 6PF2K 6-phosphofructo-2-kinase CL0071 [flax] [poplar] His_phosphatase PF00300 [flax] [poplar] His_Phos_1 Histidine phosphatase superfamily (branch 1) CL0369 [flax] [poplar] GHD PF00686 [flax] [poplar] CBM_20 Starch binding domain
Representative CDS sequence Show only first row Show all	>Lus10031869 pacid=23180814 polypeptide=Lus10031869 locus=Lus10031869.g ID=Lus10031869.BGIv1.0 annot-version=v1.0 ATGGGTACGGGGACGTCGAAAGATGGCGGAGACGGGGTGTTGCACGGCGACGGAGACGACGACCATGGCGGAGGACAGCTGTACGTGTCGTTGAAAATGG AGAACTACAAGCTTAAAGGCGAGATTATCCCTCACGTCTATGGCTCTGTCCCTCTCGTTGGCTCTTGGGATCCTTCCAAGGCTCTGTCAATGGAGAGGGA ATCGGCTTTAATGTGGGAGTTGAGCTTCGTTGTTCCTCCTGATCACGAAACTCTGGATTTCAAGTTCCTTCTGAAGCCAAAGCACGGTAGCGTTCCTTGT GTGATTGAGGAAGGTCCGAACCGGCTTCTATCTAGAGGGGCACTGCAAGGGGAATCAAGGCTAGTTGTCTTTAGGAATGGTGAGGAGACTTTGGAATATA GAGTATTCATTAAGGCTGATAGAGTTTCTCCGTTTGATCTCGCGGCTAGTTGGAGGGCTTACCAGGAGAACCATAGGCCTTCAACTGTTCGTGGGATTCC CGATGTTAGTATCGATTCCGCACCAACCACTGGAGCTGAGAATGTATCTTCCGCTGGCTTAGAGCTTGATCTTGAACACTACGTGGTTCCAGCACCATCG AATTCTGCAGTGTACGCAGCTAATAATGCAGCTACTCCAAGGTTTACGATTTCTGATGCACCATGGTCTAGTTCCCATTCCATCAAGGATTCTGGTGGTT CTTCTTCTGATCAGCCTCCATCTGTTAAGAGCATTGAGGTTGTCATCCCGGATTTTTCCCAAGTGTATCCCAGTACTGGAATAGTTGAATCAAAGTCGGT GGGGACTTTTTCGCCCGTGCAAAAGCAAGATAGTCACAGAGGACTCTTCGTGGACAGGGGTGTTGGATCTCTTAGGCTTACTAAGTCATTAAGTTCAAGT ACTTTTACGCTTGATCTTAAAAAAGTTGCTGAAGCCAAGAACTTGATGCCAGCAGCTGCTGGAGCTGTTGCCGCTGCTGCTGTAGCAGATCAGATGCTTG GTCCAAAGGAAGACAGACATTTAGCAATTGTGCTGGTTGGTCTTCCCGCTAGGGGGAAAACATTTACAGCAGTTAAACTTACTCGCTATCTTCGCTGGTT GGGTCATAATACCAAACATTTCAACGTTGGGAAGGCAAGTTTTTATTTGCTGGAGTACCAGACCTTTCTTAGAAGCCTTTTGCTGATGCAGTATGCGGAC TTTTTCCGAAATGACAACCCTGAAGGTGTGGAAGCACGTAATGAGGTAGCAGCACTCGCGATGGAAGACATGATTGCCTGGATGCAAGAGGGTGGCCAGG TAGGAATATTCGATGCCACGAATAGTACCAGAAGTAGAAGGAATATGCTGATGAAAATGGCAGAAGGGAAGTGCAAGATAATATTCTTGGAAACTTTATG CAATGACAAACGCATTATTGAGAGGAACATACGTCTCAAAATCCAGCAGAGTCCGGATTATGCCGAACAGCCAGATTTTGAAGCAGGATATGAAGACTTC AAAAGTCGGCTAGATAATTATGAAAAGGCCTACGAGGCAGTTGAAGAAGGTTCTTACATTAAAATGATAGACATGGTCAGTGGTCATGGTGGACAAATTC AGGTGAACAATATAAGTGGCTACCTTCCTGGACGCATCGTTTTCTTCCTGGTGAATACCCATCTCACACCACGTCCGATTTTACTTACAAGGCATGGAGA AAGCCGGCACAATGTTCGATCCAGAATCGGAGGGGATTCTTTGTTGAGTGACACTGGAGAAGTATACTCAAAGAAGCTCTCTAACTTCGTCGAAAAGCGA CTGAAATTGGAGAAAGCAGCTTCTATTTGGACTAGCACACTGCAGAGGACAATCCTTACAGCTGGCCCAATTACTGGGTTCCCAAAGATCCAATGGCGTG CCCTAGACGAGATAAATTCAGGAGTGTGCGATGGAATGACGTACGAGGAAATCAAGAGGAACATGCCGGAGGAATACGAGAACCGTAAGAAGGACAAGTT ACGGTACAGGTATCCTCGCGGCGAGTCGTATCTAGACGTCATTCAGAGGTTGGAGCCAGTAATCATTGAGCTTGAGAGACAAAGAGCACCCGTTGTGGTT ATATCTCACCAGGCAGTATTGAGAGCTCTGTATGCTTATTTTGCTGATAGGCCCCTCAGTGAAATCCCTCATATTGAGATGCCACTCCACACAATCATTG AGATACAGATGGGAGTTACTGGTGTGCAAGAGAAACGATACAAACTCATGGACTGA
AA sequence Show only first row Show all	>Lus10031869 pacid=23180814 polypeptide=Lus10031869 locus=Lus10031869.g ID=Lus10031869.BGIv1.0 annot-version=v1.0 MGTGTSKDGGDGVLHGDGDDDHGGGQLYVSLKMENYKLKGEIIPHVYGSVPLVGSWDPSKALSMERESALMWELSFVVPPDHETLDFKFLLKPKHGSVPC VIEEGPNRLLSRGALQGESRLVVFRNGEETLEYRVFIKADRVSPFDLAASWRAYQENHRPSTVRGIPDVSIDSAPTTGAENVSSAGLELDLEHYVVPAPS NSAVYAANNAATPRFTISDAPWSSSHSIKDSGGSSSDQPPSVKSIEVVIPDFSQVYPSTGIVESKSVGTFSPVQKQDSHRGLFVDRGVGSLRLTKSLSSS TFTLDLKKVAEAKNLMPAAAGAVAAAAVADQMLGPKEDRHLAIVLVGLPARGKTFTAVKLTRYLRWLGHNTKHFNVGKASFYLLEYQTFLRSLLLMQYAD FFRNDNPEGVEARNEVAALAMEDMIAWMQEGGQVGIFDATNSTRSRRNMLMKMAEGKCKIIFLETLCNDKRIIERNIRLKIQQSPDYAEQPDFEAGYEDF KSRLDNYEKAYEAVEEGSYIKMIDMVSGHGGQIQVNNISGYLPGRIVFFLVNTHLTPRPILLTRHGESRHNVRSRIGGDSLLSDTGEVYSKKLSNFVEKR LKLEKAASIWTSTLQRTILTAGPITGFPKIQWRALDEINSGVCDGMTYEEIKRNMPEEYENRKKDKLRYRYPRGESYLDVIQRLEPVIIELERQRAPVVV ISHQAVLRALYAYFADRPLSEIPHIEMPLHTIIEIQMGVTGVQEKRYKLMD

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DESeq2's median of ratios [FLAX]

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Coexpressed genes

Compare expression of checked genes Schematic diagram [FLAX] Schematic diagram [POPLAR]

*If you select 4 or less genes and then press "compare expression", expression will be shown as a graph. If you select more than 4 genes, expresion will be shown as a heat map.
*Color represents relative expression level among samples for each gene.

At best	At TF class	At alias	At description		Locus	MR	r	Symbol	HYP	R_s2_CTR	R_s2_Fox	R_s4_CTR	R_s4_Fox	R_r1_CTR	R_r1_Fox	R_r3_CTR	R_r3_Fox	R_r1s2_CTR	R_r1s2_Fox	R_r3s2_CTR	R_r3s2_Fox	R_s6_CTR	R_s6_Al4	R_s6_Al12	R_s6_Al24	R_s8_CTR	R_s8_Al4	R_s8_Al12	R_s8_Al24	R_r5_CTR	R_r5_Al4	R_r5_Al12	R_r5_Al24	R_r7_CTR	R_r7_Al4	R_r7_Al12	R_r7_Al24	LEAF_N	LEAF_P	LEAF_NPK	SAM	AR_Bet	AR_rdf	cPAR	TOP_Bet	TOP_rdf	iFIBa	iFIBb	MID_Bet	MID_rdf	tFIBa	tFIB_Gr	tFIB_Li	tFIB_Bi	tFIBb	tFIBb_PUL8	tFIBb_PUL24	tFIBb_PUL96	tFIBb_OPP8	tFIBb_OPP24	tFIBb_OPP96	sXYLa	sXYLb	sXYLb_PUL8	sXYLb_PUL24	sXYLb_PUL96	sXYLb_OPP8	sXYLb_OPP24	sXYLb_OPP96
AT1G07110		FKFBP, ATF2KP, ...	"fructose-2,6-bisphosphatase",...		Lus10031869 [exp]	0	1
AT2G34860		EDA3	embryo sac development arrest ...		Lus10023593 [exp]	2.0	0.9525
AT3G11670		DGD1	DIGALACTOSYL DIACYLGLYCEROL DE...		Lus10004200 [exp]	2.4	0.9469
AT1G08550		AVDE1, NPQ1	ARABIDOPSIS VIOLAXANTHIN DE-EP...		Lus10021986 [exp]	4.0	0.9461
AT3G05625			Tetratricopeptide repeat (TPR)...		Lus10015207 [exp]	4.2	0.9324
AT3G46780		PTAC16	plastid transcriptionally acti...		Lus10040768 [exp]	4.7	0.9501
AT1G23400		CAF2, ATCAF2	ARABIDOPSIS THALIANA HOMOLOG O...		Lus10013029 [exp]	7.5	0.9103
AT5G22800		EMB86, EMB263, ...	EMBRYO DEFECTIVE 86, EMBRYO DE...		Lus10022640 [exp]	8.4	0.9385
AT3G11945		PDS2, ATHST	PHYTOENE DESATURATION 2, homog...		Lus10016221 [exp]	8.4	0.8966
AT2G32640			Lycopene beta/epsilon cyclase ...		Lus10031537 [exp]	8.5	0.9252
AT2G21280		GC1, ATSULA	GIANT CHLOROPLAST 1, NAD(P)-bi...		Lus10042051 [exp]	11.7	0.9057

Compare expression of checked genes

Lus10031869 coexpression network

*The number of genes in the network is adjusted within 50 genes.
*Gene name represents symbol(s) of closest Arabidopsis gene if symbol(s) for the gene itself doesn't exist.
*Circle diameter represents the number of connection with other genes within this network.
*Color for gene name represents subnetwork based on the result of network clustering.