Plant FIBer expression Database

External link	JGI Phytozome v13 [genome browser]
Symbol
Arabidopsis homologues Show only best Show top 10	Locus ID BLAST score/e-value TF class Alias TAIR10 short description AT3G47340 969 / 0 AT-ASN1, DIN6, ASN1 DARK INDUCIBLE 6, ARABIDOPSIS THALIANA GLUTAMINE-DEPENDENT ASPARAGINE SYNTHASE 1, glutamine-dependent asparagine synthase 1 (.1.2.3) AT5G10240 913 / 0 ASN3 asparagine synthetase 3 (.1.2) AT5G65010 901 / 0 ASN2 asparagine synthetase 2 (.1.2) AT5G19140 51 / 5e-07 AtAILP1, AILP1 Aluminium induced protein with YGL and LRDR motifs (.1.2) AT4G27450 48 / 7e-06 Aluminium induced protein with YGL and LRDR motifs (.1) AT3G15450 42 / 0.0005 Aluminium induced protein with YGL and LRDR motifs (.1.2.3)
Paralogs Show only best Show top 10	Gene ID BLAST score/e-value At best hit BLAST score/e-value TAIR10 short description Lus10042281 [exp] 1008 / 0 AT3G47340 1068 / 0.0 DARK INDUCIBLE 6, ARABIDOPSIS THALIANA GLUTAMINE-DEPENDENT ASPARAGINE SYNTHASE 1, glutamine-dependent asparagine synthase 1 (.1.2.3) Lus10024052 [exp] 870 / 0 AT5G10240 1013 / 0.0 asparagine synthetase 3 (.1.2) Lus10041698 [exp] 828 / 0 AT5G10240 976 / 0.0 asparagine synthetase 3 (.1.2) Lus10031300 [exp] 159 / 5e-45 AT5G65010 144 / 2e-40 asparagine synthetase 2 (.1.2) Lus10026376 [exp] 142 / 3e-39 AT3G47340 138 / 3e-38 DARK INDUCIBLE 6, ARABIDOPSIS THALIANA GLUTAMINE-DEPENDENT ASPARAGINE SYNTHASE 1, glutamine-dependent asparagine synthase 1 (.1.2.3) Lus10026379 [exp] 87 / 2e-18 AT3G17930 170 / 1e-52 unknown protein
Poplar homologues Show only best Show top 10	Locus ID BLAST score/e-value At best hit BLAST score/e-value TAIR10 short description Potri.009G072900 [exp] 993 / 0 AT3G47340 1027 / 0.0 DARK INDUCIBLE 6, ARABIDOPSIS THALIANA GLUTAMINE-DEPENDENT ASPARAGINE SYNTHASE 1, glutamine-dependent asparagine synthase 1 (.1.2.3) Potri.001G278400 [exp] 987 / 0 AT3G47340 1018 / 0.0 DARK INDUCIBLE 6, ARABIDOPSIS THALIANA GLUTAMINE-DEPENDENT ASPARAGINE SYNTHASE 1, glutamine-dependent asparagine synthase 1 (.1.2.3) Potri.005G075700 [exp] 911 / 0 AT5G10240 1039 / 0.0 asparagine synthetase 3 (.1.2) Potri.001G403000 [exp] 49 / 5e-06 AT4G27450 436 / 3e-157 Aluminium induced protein with YGL and LRDR motifs (.1) Potri.011G122100 [exp] 47 / 2e-05 AT4G27450 428 / 7e-154 Aluminium induced protein with YGL and LRDR motifs (.1)
PFAM info	Clan ID Clan name Pfam ID Pfam name Pfam description CL0039 [flax] [poplar] HUP PF00733 [flax] [poplar] Asn_synthase Asparagine synthase
Representative CDS sequence Show only first row Show all	>Lus10031870 pacid=23180735 polypeptide=Lus10031870 locus=Lus10031870.g ID=Lus10031870.BGIv1.0 annot-version=v1.0 ATGTGCGGGATATTAGCAGTGTTGGGTTGTTCGGACGATTCTCAGGCGAAGAGGGCTCGAGTTTTGGAGCTCTCCCGGCGGCTGAAGCACCGTGGACCCG ACTGGAGCGGCCTGTACAAGTACAAAGACTGTTACTTGGCCCATCAGCGTCTGGCCATCGTTGACCCTGACTCCGGCGACCAACCCCTCTTCGACGAGGA CGAATCGGTCGCCGTCACCGTCAACGGCGAGATTTATAACCATGAAGAGCTCAGGAAGCGGCTCCCCAATCACCGGTTCCGTACCGGCAGCGACTGCGAC GTCATCGCCCATCTGTACGAGGAATACGGTGACAAATTCGTGGAAATGCTGGACGGGATCTTCTCACTAGTGCTTCTAGACACACGCGACGACTCCTTCA TCGTAGCTCGTGACGCCGTCGGCATCACTTCCCTCTACATCGGCTGGGGGCTCGACGGCTCGATATGGATATCGTCCGAGATGAAAGCCTTACACGACGA CTCCGAACAGTTCGAGTGCTTCCCGCCCGGCCATCTCTACTCGAGCAAGCTCGGCGGGTTCAGACGATGGTACAATCCTCGTTGGTTCTCCGAGGTTGTT CCTTCGACTCCCTATGACCCCCTTGCCCTCAGGCACGCCTTTGAGACGTCTGTGACGAAGAGACTGATGAGTGACGTCCCATTCGGAGTCCTCCTCTCCG GCGGACTAGATTCCTCCTTAGTGGCATCAATCACTGCCAGACACTTCGCCGAAACCAAACTCGCAAGGCAATGGTCCAAACTCCAATCCTTCTGCGTAGG CTTGGAGGGCTCCCCTGACTTGAAAGCAGCGAAAGAAGTAGCCGACTACTTGGGAACGGTCCATCACGAGTTCCACTTCACGGTTCAGGACGGGATCGAT GCGATCGAGGACGTGATTTACCACATCGAGACATACGATGTGACCACGATTCGAGCCAGCACGCCCATGTTCCTCATGTCCAGGAAGATCAAGGCTACAG GGGTGAAGATGGTGATCTCAGGGGAAGGTGCTGACGAAGTGTTTGGTGGGTATCTATACTTCCATAAGGCACCGAGCAAGGACGAGTTCCATCGCGAGAC TTGTCGGAAGATCAAGGCCCTCCATCTGTACGACTGCCTGAGAGCCAACAAGGCCACCTCTGCTTGGGGGCTGGAGGCTCGGATCCCATTCTTGGACAAG GAGTTCCTCGATGTTGCCATGGACATTGACCCTGAATGGAAGATGGTTAAGCCAGAGGAAGGAAGGACGGAGAAATGGGTTCTTAGGAAAGCTTTTGATG ATGAAGACAGACCTTATCTCCCTAAGCATATCCTCTACAGGCAGAAAGAGCAGTTCAGTGACGGAGTTGGGTACAGCTGGATCGACGGCCTCAAATCCCA TGCAGCCAAACACGTTACAGACAAGATGATGCAGAACGCTGCTCATATATACCCACACAACACCCCACCATCCAAAGAAGCTTACTACTACAGGATGATC TTCGAGAAGCTCTTCCCACAGAACTCAGCCAAGCTGACGGTTCCTGGAGGAGCAAGTGTGGCGTGCAGCACAGCCAAAGCTGTGGAATGGGATGCTGCAT GGTCGGCCAATCTTGATCCTTCGGGGAGAGCCGCTTTGGGTGTTCATCTTTCGGCTTATGCGGATTCTGGAACATCGGCTGCTCCGAAGATCATCGACAA TGTTCCGAGGATGATGGAAGTGGGATGA
AA sequence Show only first row Show all	>Lus10031870 pacid=23180735 polypeptide=Lus10031870 locus=Lus10031870.g ID=Lus10031870.BGIv1.0 annot-version=v1.0 MCGILAVLGCSDDSQAKRARVLELSRRLKHRGPDWSGLYKYKDCYLAHQRLAIVDPDSGDQPLFDEDESVAVTVNGEIYNHEELRKRLPNHRFRTGSDCD VIAHLYEEYGDKFVEMLDGIFSLVLLDTRDDSFIVARDAVGITSLYIGWGLDGSIWISSEMKALHDDSEQFECFPPGHLYSSKLGGFRRWYNPRWFSEVV PSTPYDPLALRHAFETSVTKRLMSDVPFGVLLSGGLDSSLVASITARHFAETKLARQWSKLQSFCVGLEGSPDLKAAKEVADYLGTVHHEFHFTVQDGID AIEDVIYHIETYDVTTIRASTPMFLMSRKIKATGVKMVISGEGADEVFGGYLYFHKAPSKDEFHRETCRKIKALHLYDCLRANKATSAWGLEARIPFLDK EFLDVAMDIDPEWKMVKPEEGRTEKWVLRKAFDDEDRPYLPKHILYRQKEQFSDGVGYSWIDGLKSHAAKHVTDKMMQNAAHIYPHNTPPSKEAYYYRMI FEKLFPQNSAKLTVPGGASVACSTAKAVEWDAAWSANLDPSGRAALGVHLSAYADSGTSAAPKIIDNVPRMMEVG

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DESeq2's median of ratios [FLAX]

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Coexpressed genes

Compare expression of checked genes Schematic diagram [FLAX] Schematic diagram [POPLAR]

*If you select 4 or less genes and then press "compare expression", expression will be shown as a graph. If you select more than 4 genes, expresion will be shown as a heat map.
*Color represents relative expression level among samples for each gene.

At best	At TF class	At alias	At description		Locus	MR	r	Symbol	HYP	R_s2_CTR	R_s2_Fox	R_s4_CTR	R_s4_Fox	R_r1_CTR	R_r1_Fox	R_r3_CTR	R_r3_Fox	R_r1s2_CTR	R_r1s2_Fox	R_r3s2_CTR	R_r3s2_Fox	R_s6_CTR	R_s6_Al4	R_s6_Al12	R_s6_Al24	R_s8_CTR	R_s8_Al4	R_s8_Al12	R_s8_Al24	R_r5_CTR	R_r5_Al4	R_r5_Al12	R_r5_Al24	R_r7_CTR	R_r7_Al4	R_r7_Al12	R_r7_Al24	LEAF_N	LEAF_P	LEAF_NPK	SAM	AR_Bet	AR_rdf	cPAR	TOP_Bet	TOP_rdf	iFIBa	iFIBb	MID_Bet	MID_rdf	tFIBa	tFIB_Gr	tFIB_Li	tFIB_Bi	tFIBb	tFIBb_PUL8	tFIBb_PUL24	tFIBb_PUL96	tFIBb_OPP8	tFIBb_OPP24	tFIBb_OPP96	sXYLa	sXYLb	sXYLb_PUL8	sXYLb_PUL24	sXYLb_PUL96	sXYLb_OPP8	sXYLb_OPP24	sXYLb_OPP96
AT3G47340		AT-ASN1, DIN6, ...	DARK INDUCIBLE 6, ARABIDOPSIS ...		Lus10031870 [exp]	0	1
AT5G37060		ATCHX24	cation/H+ exchanger 24, ARABID...		Lus10031852 [exp]	5.7	0.8167
AT5G66400		ATDI8, RAB18	RESPONSIVE TO ABA 18, ARABIDOP...		Lus10041969 [exp]	5.9	0.6362
AT5G42540		AtXRN2, XRN2	exoribonuclease 2 (.1.2)		Lus10009577 [exp]	7.9	0.7773
AT2G40190		LEW3	LEAF WILTING 3, UDP-Glycosyltr...		Lus10007909 [exp]	10.7	0.7757
AT1G77980	MADS	AGL66	AGAMOUS-like 66 (.1)		Lus10018493 [exp]	12.5	0.7712
AT1G65450			HXXXD-type acyl-transferase fa...		Lus10029920 [exp]	13.1	0.7730
AT5G11730			Core-2/I-branching beta-1,6-N-...		Lus10034348 [exp]	14.7	0.7730
AT5G45670			GDSL-like Lipase/Acylhydrolase...		Lus10011999 [exp]	17.3	0.7560
					Lus10011637 [exp]	19.2	0.7519
AT1G71530			Protein kinase superfamily pro...		Lus10009464 [exp]	19.4	0.7167

Compare expression of checked genes

Lus10031870 coexpression network

*The number of genes in the network is adjusted within 50 genes.
*Gene name represents symbol(s) of closest Arabidopsis gene if symbol(s) for the gene itself doesn't exist.
*Circle diameter represents the number of connection with other genes within this network.
*Color for gene name represents subnetwork based on the result of network clustering.