Plant FIBer expression Database

External link	JGI Phytozome v13 [genome browser]
Symbol
Arabidopsis homologues Show only best Show top 10	Locus ID BLAST score/e-value TF class Alias TAIR10 short description AT5G58600 441 / 5e-154 TBL44, PMR5 TRICHOME BIREFRINGENCE-LIKE 44, POWDERY MILDEW RESISTANT 5, Plant protein of unknown function (DUF828) (.1), Plant protein of unknown function (DUF828) (.2) AT2G30010 413 / 3e-143 TBL45 TRICHOME BIREFRINGENCE-LIKE 45 (.1) AT1G29050 353 / 5e-120 TBL38 TRICHOME BIREFRINGENCE-LIKE 38 (.1) AT2G34070 341 / 4e-115 TBL37 TRICHOME BIREFRINGENCE-LIKE 37 (.1) AT3G14850 333 / 1e-112 TBL41 TRICHOME BIREFRINGENCE-LIKE 41 (.1.2) AT2G42570 320 / 3e-107 TBL39 TRICHOME BIREFRINGENCE-LIKE 39 (.1) AT2G31110 320 / 3e-107 TBL40 TRICHOME BIREFRINGENCE-LIKE 40, Plant protein of unknown function (DUF828) (.1), Plant protein of unknown function (DUF828) (.2) AT2G30900 315 / 3e-105 TBL43 TRICHOME BIREFRINGENCE-LIKE 43 (.1) AT1G78710 301 / 9e-100 TBL42 TRICHOME BIREFRINGENCE-LIKE 42 (.1.2) AT5G49340 288 / 1e-93 TBL4 TRICHOME BIREFRINGENCE-LIKE 4 (.1)
Paralogs Show only best Show top 10	Gene ID BLAST score/e-value At best hit BLAST score/e-value TAIR10 short description Lus10031301 [exp] 737 / 0 AT5G58600 452 / 1e-158 TRICHOME BIREFRINGENCE-LIKE 44, POWDERY MILDEW RESISTANT 5, Plant protein of unknown function (DUF828) (.1), Plant protein of unknown function (DUF828) (.2) Lus10000988 [exp] 337 / 5e-114 AT1G29050 526 / 0.0 TRICHOME BIREFRINGENCE-LIKE 38 (.1) Lus10013929 [exp] 337 / 7e-114 AT1G29050 519 / 0.0 TRICHOME BIREFRINGENCE-LIKE 38 (.1) Lus10015309 [exp] 318 / 2e-106 AT2G34070 499 / 1e-177 TRICHOME BIREFRINGENCE-LIKE 37 (.1) Lus10002198 [exp] 318 / 2e-106 AT2G42570 494 / 1e-176 TRICHOME BIREFRINGENCE-LIKE 39 (.1) Lus10033617 [exp] 318 / 2e-106 AT2G42570 486 / 6e-173 TRICHOME BIREFRINGENCE-LIKE 39 (.1) Lus10039559 [exp] 296 / 4e-98 AT1G29050 374 / 1e-128 TRICHOME BIREFRINGENCE-LIKE 38 (.1) Lus10024176 [exp] 297 / 1e-97 AT1G29050 366 / 5e-125 TRICHOME BIREFRINGENCE-LIKE 38 (.1) Lus10021066 [exp] 296 / 2e-94 AT5G06700 671 / 0.0 TRICHOME BIREFRINGENCE, Plant protein of unknown function (DUF828) (.1)
Poplar homologues Show only best Show top 10	Locus ID BLAST score/e-value At best hit BLAST score/e-value TAIR10 short description Potri.001G278300 [exp] 522 / 0 AT5G58600 525 / 0.0 TRICHOME BIREFRINGENCE-LIKE 44, POWDERY MILDEW RESISTANT 5, Plant protein of unknown function (DUF828) (.1), Plant protein of unknown function (DUF828) (.2) Potri.009G072800 [exp] 510 / 0 AT5G58600 523 / 0.0 TRICHOME BIREFRINGENCE-LIKE 44, POWDERY MILDEW RESISTANT 5, Plant protein of unknown function (DUF828) (.1), Plant protein of unknown function (DUF828) (.2) Potri.011G064700 [exp] 354 / 2e-120 AT1G29050 530 / 0.0 TRICHOME BIREFRINGENCE-LIKE 38 (.1) Potri.003G201700 [exp] 333 / 2e-112 AT1G29050 403 / 5e-140 TRICHOME BIREFRINGENCE-LIKE 38 (.1) Potri.004G055000 [exp] 333 / 3e-112 AT1G29050 523 / 0.0 TRICHOME BIREFRINGENCE-LIKE 38 (.1) Potri.013G118500 [exp] 332 / 7e-112 AT2G42570 512 / 0.0 TRICHOME BIREFRINGENCE-LIKE 39 (.1) Potri.019G090200 [exp] 332 / 8e-112 AT2G42570 507 / 0.0 TRICHOME BIREFRINGENCE-LIKE 39 (.1) Potri.003G201600 [exp] 330 / 4e-111 AT1G29050 408 / 2e-142 TRICHOME BIREFRINGENCE-LIKE 38 (.1) Potri.011G106300 [exp] 328 / 1e-110 AT3G14850 453 / 2e-160 TRICHOME BIREFRINGENCE-LIKE 41 (.1.2) Potri.011G106200 [exp] 326 / 2e-109 AT1G29050 416 / 4e-145 TRICHOME BIREFRINGENCE-LIKE 38 (.1)
PFAM info	Clan ID Clan name Pfam ID Pfam name Pfam description
Representative CDS sequence Show only first row Show all	>Lus10031871 pacid=23180603 polypeptide=Lus10031871 locus=Lus10031871.g ID=Lus10031871.BGIv1.0 annot-version=v1.0 ATGGCGTCGTCCTCCTCTCTTCCAAACAACCCATTACTACAATACCTCCTAACAATAACATCCTTCTTCTTCTTCTCTCTACTTCTGCAAACCCATCCAA CCAACTCAGCTCTAATCGTAACCTACAGAAACCACCATCACAGCAACAACAACAACAACCCATTCCCTCCCAGATTCCAAACCAACCGAACCAACGGCTG CGCATTGTTCGAAGGCAGCTGGGTCCGCGACGACTCCTACCCGCTCTACTCCTCCTCCACTTGCTCCTTCGTCGACCGCAATTTCAACTGCGAGTTCTAC GGCCGCCCCGATTTCACTTACCCCAAGTACCGCTGGCAGCCCCTCGGATGCGAGCTCCCTAGATTCGATGGGATGCAGTTTCTGCAGAGGCTGAGTGGGA AGAGTGTGATGTTCGTCGGGGATTCGATCGGGAGGGATCAGTATGAGTCATTGATCTGTATGATTATGGCGACGGCTCCCAAGGCTGCTAGCCAGATGAA CGGCGGTGATCCTCTCTCCACCGTCAAGTTCCCGGAGTACGGTGTTAGGGTCTCGTTCTACAAGACACCATACTTGGTGGACATTGGCGTGGAGCACGGG AAGAGAGTGCTGAAGCTGGACGACATCTCAAGCAACGCCGACGTCTGGCGAAACGCCGAGGTTTTGTACTTCAACACCGGCCATTGGTGGAACCACCAAG GATCACTCCAAGGATGGGAATACATGGAAACAGGAGGAAACTACTACAAGGACATGGATCGACTTACAGCAATGGAGAGAGCTGTAAGAACATGGGGGGA CTGGGTCGACAGCAACATCGACCGTTCGAAAACTCGCGTCTTCTTCCTCTCCACCTCCCCTACACACTACGATCCTAGCTTGTGGAGCTCGGGGGAGACG GCGGCCACGAAGAACTGTTACGGCGAAACATCGCCAGTGAGCGGAACGACGTACCCAGGAGCATTCCCCGATCAGATGAGGGTACTGGAAGGCGCACTTC AGCAGATGAAGAGGCCACCATTCCTAATGGACATCACATTGCTCTCGGGGCTAAGGAAAGACGCCCACCCTTCGATTTACAGTGGCGATTTGAGCCCTCA GGAGCGAGCTAACCCGCTGAGATCGGCTGATTGTAGCCATTGGTGCCTCCCTGGCTTACCTGATACTTGGAACCAGTTGCTGTATACTGCTCTGTTCTTC TAG
AA sequence Show only first row Show all	>Lus10031871 pacid=23180603 polypeptide=Lus10031871 locus=Lus10031871.g ID=Lus10031871.BGIv1.0 annot-version=v1.0 MASSSSLPNNPLLQYLLTITSFFFFSLLLQTHPTNSALIVTYRNHHHSNNNNNPFPPRFQTNRTNGCALFEGSWVRDDSYPLYSSSTCSFVDRNFNCEFY GRPDFTYPKYRWQPLGCELPRFDGMQFLQRLSGKSVMFVGDSIGRDQYESLICMIMATAPKAASQMNGGDPLSTVKFPEYGVRVSFYKTPYLVDIGVEHG KRVLKLDDISSNADVWRNAEVLYFNTGHWWNHQGSLQGWEYMETGGNYYKDMDRLTAMERAVRTWGDWVDSNIDRSKTRVFFLSTSPTHYDPSLWSSGET AATKNCYGETSPVSGTTYPGAFPDQMRVLEGALQQMKRPPFLMDITLLSGLRKDAHPSIYSGDLSPQERANPLRSADCSHWCLPGLPDTWNQLLYTALFF

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DESeq2's median of ratios [FLAX]

Order by: Tissue Experiment Show only core collection Show again Show schematic diagram

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Coexpressed genes

Compare expression of checked genes Schematic diagram [FLAX] Schematic diagram [POPLAR]

*If you select 4 or less genes and then press "compare expression", expression will be shown as a graph. If you select more than 4 genes, expresion will be shown as a heat map.
*Color represents relative expression level among samples for each gene.

At best	At TF class	At alias	At description		Locus	MR	r	Symbol	HYP	R_s2_CTR	R_s2_Fox	R_s4_CTR	R_s4_Fox	R_r1_CTR	R_r1_Fox	R_r3_CTR	R_r3_Fox	R_r1s2_CTR	R_r1s2_Fox	R_r3s2_CTR	R_r3s2_Fox	R_s6_CTR	R_s6_Al4	R_s6_Al12	R_s6_Al24	R_s8_CTR	R_s8_Al4	R_s8_Al12	R_s8_Al24	R_r5_CTR	R_r5_Al4	R_r5_Al12	R_r5_Al24	R_r7_CTR	R_r7_Al4	R_r7_Al12	R_r7_Al24	LEAF_N	LEAF_P	LEAF_NPK	SAM	AR_Bet	AR_rdf	cPAR	TOP_Bet	TOP_rdf	iFIBa	iFIBb	MID_Bet	MID_rdf	tFIBa	tFIB_Gr	tFIB_Li	tFIB_Bi	tFIBb	tFIBb_PUL8	tFIBb_PUL24	tFIBb_PUL96	tFIBb_OPP8	tFIBb_OPP24	tFIBb_OPP96	sXYLa	sXYLb	sXYLb_PUL8	sXYLb_PUL24	sXYLb_PUL96	sXYLb_OPP8	sXYLb_OPP24	sXYLb_OPP96
AT5G58600		TBL44, PMR5	TRICHOME BIREFRINGENCE-LIKE 44...		Lus10031871 [exp]	0	1
AT3G25620		ABCG21	ATP-binding cassette G21, ABC-...		Lus10034387 [exp]	1.0	0.8823
AT1G28390			Protein kinase superfamily pro...		Lus10039770 [exp]	3.9	0.8087
					Lus10017800 [exp]	7.2	0.8394
AT1G55020		ATLOX1, LOX1	ARABIDOPSIS LIPOXYGENASE 1, li...		Lus10031505 [exp]	7.9	0.8006
AT5G61120			unknown protein		Lus10030998 [exp]	8.8	0.7899
AT4G39700			Heavy metal transport/detoxifi...		Lus10022508 [exp]	9.2	0.8111
AT1G32240	GARP	KAN2, KANADI2	KANADI 2, Homeodomain-like sup...		Lus10035386 [exp]	10.6	0.7974
AT3G03220		ATHEXPALPHA1.22...	EXPANSIN 13, expansin A13 (.1)		Lus10010454 [exp]	10.7	0.7667
AT1G75290			NAD(P)-binding Rossmann-fold s...		Lus10021709 [exp]	12.5	0.8024
AT1G05370			Sec14p-like phosphatidylinosit...		Lus10041206 [exp]	14.3	0.7849

Compare expression of checked genes

Lus10031871 coexpression network

*The number of genes in the network is adjusted within 50 genes.
*Gene name represents symbol(s) of closest Arabidopsis gene if symbol(s) for the gene itself doesn't exist.
*Circle diameter represents the number of connection with other genes within this network.
*Color for gene name represents subnetwork based on the result of network clustering.