Plant FIBer expression Database

External link	JGI Phytozome v13 [genome browser]
Symbol
Arabidopsis homologues Show only best Show top 10	Locus ID BLAST score/e-value TF class Alias TAIR10 short description AT2G30080 124 / 2e-34 ATZIP6, ZIP6 ZIP metal ion transporter family (.1) AT1G05300 70 / 5e-14 ZIP5 zinc transporter 5 precursor (.1.2) AT2G32270 66 / 9e-13 ZIP3 zinc transporter 3 precursor (.1) AT1G10970 63 / 1e-11 ATZIP4, ZIP4 zinc transporter 4 precursor (.1) AT1G31260 63 / 1e-11 ZIP10 zinc transporter 10 precursor (.1) AT2G04032 57 / 9e-10 ZIP7 zinc transporter 7 precursor (.1) AT1G60960 57 / 1e-09 ATIRT3, IRT3 iron regulated transporter 3 (.1) AT4G19690 57 / 1e-09 ATIRT1, IRT1 ARABIDOPSIS IRON-REGULATED TRANSPORTER 1, iron-regulated transporter 1 (.1.2) AT4G19680 56 / 3e-09 ATIRT2, IRT2 iron regulated transporter 2 (.1.2) AT4G33020 56 / 3e-09 ATZIP9, ZIP9 ZIP metal ion transporter family (.1)
Paralogs Show only best Show top 10	Gene ID BLAST score/e-value At best hit BLAST score/e-value TAIR10 short description Lus10031307 [exp] 171 / 2e-54 AT2G30080 264 / 2e-89 ZIP metal ion transporter family (.1) Lus10019854 [exp] 69 / 7e-14 AT3G12750 280 / 6e-94 zinc transporter 1 precursor (.1) Lus10014062 [exp] 66 / 1e-12 AT3G12750 318 / 3e-107 zinc transporter 1 precursor (.1) Lus10024107 [exp] 65 / 2e-12 AT3G12750 394 / 4e-137 zinc transporter 1 precursor (.1) Lus10041647 [exp] 65 / 2e-12 AT3G12750 383 / 2e-132 zinc transporter 1 precursor (.1) Lus10041613 [exp] 65 / 3e-12 AT3G12750 397 / 1e-138 zinc transporter 1 precursor (.1) Lus10031302 [exp] 57 / 7e-11 ND 40 / 5e-05 Lus10040615 [exp] 56 / 2e-09 AT1G31260 437 / 6e-154 zinc transporter 10 precursor (.1) Lus10006935 [exp] 52 / 4e-08 AT3G12750 295 / 2e-98 zinc transporter 1 precursor (.1)
Poplar homologues Show only best Show top 10	Locus ID BLAST score/e-value At best hit BLAST score/e-value TAIR10 short description Potri.009G074100 [exp] 142 / 3e-41 AT2G30080 360 / 2e-124 ZIP metal ion transporter family (.1) Potri.001G279300 [exp] 142 / 5e-41 AT2G30080 378 / 2e-131 ZIP metal ion transporter family (.1) Potri.006G006800 [exp] 66 / 1e-12 AT1G05300 322 / 6e-109 zinc transporter 5 precursor (.1.2) Potri.015G117700 [exp] 64 / 7e-12 AT1G31260 436 / 5e-154 zinc transporter 10 precursor (.1) Potri.006G006600 [exp] 63 / 1e-11 AT1G05300 328 / 2e-111 zinc transporter 5 precursor (.1.2) Potri.006G006900 [exp] 62 / 1e-11 AT1G05300 187 / 2e-58 zinc transporter 5 precursor (.1.2) Potri.015G117900 [exp] 62 / 2e-11 AT4G19690 443 / 2e-156 ARABIDOPSIS IRON-REGULATED TRANSPORTER 1, iron-regulated transporter 1 (.1.2) Potri.010G134300 [exp] 62 / 3e-11 AT2G04032 402 / 4e-140 zinc transporter 7 precursor (.1) Potri.001G160400 [exp] 61 / 5e-11 AT3G12750 320 / 5e-108 zinc transporter 1 precursor (.1) Potri.018G053300 [exp] 60 / 1e-10 AT1G10970 440 / 3e-153 zinc transporter 4 precursor (.1)
PFAM info	Clan ID Clan name Pfam ID Pfam name Pfam description CL0184 [flax] [poplar] DMT PF02535 [flax] [poplar] Zip ZIP Zinc transporter
Representative CDS sequence Show only first row Show all	>Lus10031872 pacid=23180647 polypeptide=Lus10031872 locus=Lus10031872.g ID=Lus10031872.BGIv1.0 annot-version=v1.0 ATGGTTCCCAAACCGAGGTGTAGAGATCCTGATTCAGCTTTCCCAGTAGCTGGTAAACCGCCATTCCTCTTCTTACTTCTGGGTTGTTCAATGGATCGCA GCGCTCCTCCTTCCACAATCTACTCTTGCTCTGCAACTGCAGCACCTGTTAGTACAAGCTCCATTGAATTGGAATTTGAAGACCAAGATCAAGAAGAACA TATCCGGGAGATAGAAGAGCTTCACAATTACCTTGACAAGGCGGGATTTAGTATGGGGACGGTGGCATACATGTCGATAATGTTCGCCGTGACTACACCA ATGGGGATCATGTTAGGGATGGCGATATTCTGGTTAACAGGATACGACGACAGCAACCCTAACGCCTTGATCATGGAAGGACTACTCGGATCACTATCCT CCGGAATCCTCATCTATATGGCTCTAGTTGATCTGATCGCTCTCGATTTCTTCCAAAACAAGCTCATGAGCTCCGCTCCACGGCTGAAGAAGGCCTCCTT CGTCGCCCTTCTTCTCAGCTCCACCTCCATGTCCGTCCTCGCTCTCTGGGGGCTTAACTTAGTTCGTTCTCAATTTTTCCGACTACGATTGATGTATGGT ATATGA
AA sequence Show only first row Show all	>Lus10031872 pacid=23180647 polypeptide=Lus10031872 locus=Lus10031872.g ID=Lus10031872.BGIv1.0 annot-version=v1.0 MVPKPRCRDPDSAFPVAGKPPFLFLLLGCSMDRSAPPSTIYSCSATAAPVSTSSIELEFEDQDQEEHIREIEELHNYLDKAGFSMGTVAYMSIMFAVTTP MGIMLGMAIFWLTGYDDSNPNALIMEGLLGSLSSGILIYMALVDLIALDFFQNKLMSSAPRLKKASFVALLLSSTSMSVLALWGLNLVRSQFFRLRLMYG I

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DESeq2's median of ratios [FLAX]

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Coexpressed genes

Compare expression of checked genes Schematic diagram [FLAX] Schematic diagram [POPLAR]

*If you select 4 or less genes and then press "compare expression", expression will be shown as a graph. If you select more than 4 genes, expresion will be shown as a heat map.
*Color represents relative expression level among samples for each gene.

At best	At TF class	At alias	At description		Locus	MR	r	Symbol	HYP	R_s2_CTR	R_s2_Fox	R_s4_CTR	R_s4_Fox	R_r1_CTR	R_r1_Fox	R_r3_CTR	R_r3_Fox	R_r1s2_CTR	R_r1s2_Fox	R_r3s2_CTR	R_r3s2_Fox	R_s6_CTR	R_s6_Al4	R_s6_Al12	R_s6_Al24	R_s8_CTR	R_s8_Al4	R_s8_Al12	R_s8_Al24	R_r5_CTR	R_r5_Al4	R_r5_Al12	R_r5_Al24	R_r7_CTR	R_r7_Al4	R_r7_Al12	R_r7_Al24	LEAF_N	LEAF_P	LEAF_NPK	SAM	AR_Bet	AR_rdf	cPAR	TOP_Bet	TOP_rdf	iFIBa	iFIBb	MID_Bet	MID_rdf	tFIBa	tFIB_Gr	tFIB_Li	tFIB_Bi	tFIBb	tFIBb_PUL8	tFIBb_PUL24	tFIBb_PUL96	tFIBb_OPP8	tFIBb_OPP24	tFIBb_OPP96	sXYLa	sXYLb	sXYLb_PUL8	sXYLb_PUL24	sXYLb_PUL96	sXYLb_OPP8	sXYLb_OPP24	sXYLb_OPP96
AT2G30080		ATZIP6, ZIP6	ZIP metal ion transporter fami...		Lus10031872 [exp]	0	1
AT1G77410		BGAL16	beta-galactosidase 16 (.1)		Lus10028538 [exp]	13.8	0.8149
AT4G27300			S-locus lectin protein kinase ...		Lus10014000 [exp]	59.1	0.7438
AT5G46060			Protein of unknown function, D...		Lus10005267 [exp]	62.0	0.7780
					Lus10029790 [exp]	111.8	0.7783
AT4G00840			DHHC-type zinc finger family p...		Lus10002694 [exp]	164.7	0.7612
AT5G56040			Leucine-rich receptor-like pro...		Lus10005847 [exp]	193.3	0.7479

Compare expression of checked genes

Lus10031872 coexpression network

*The number of genes in the network is adjusted within 50 genes.
*Gene name represents symbol(s) of closest Arabidopsis gene if symbol(s) for the gene itself doesn't exist.
*Circle diameter represents the number of connection with other genes within this network.
*Color for gene name represents subnetwork based on the result of network clustering.