Plant FIBer expression Database

External link	JGI Phytozome v13 [genome browser]
Symbol
Arabidopsis homologues Show only best Show top 10	Locus ID BLAST score/e-value TF class Alias TAIR10 short description AT2G39530 65 / 3e-13 Uncharacterised protein family (UPF0497) (.1) AT2G39518 64 / 1e-12 Uncharacterised protein family (UPF0497) (.1)
Paralogs Show only best Show top 10	Gene ID BLAST score/e-value At best hit BLAST score/e-value TAIR10 short description Lus10031304 [exp] 244 / 4e-83 AT2G39518 89 / 3e-22 Uncharacterised protein family (UPF0497) (.1) Lus10031305 [exp] 219 / 4e-73 AT2G39530 89 / 3e-22 Uncharacterised protein family (UPF0497) (.1) Lus10031875 [exp] 179 / 6e-57 AT2G39530 86 / 4e-21 Uncharacterised protein family (UPF0497) (.1) Lus10031303 [exp] 173 / 7e-55 AT2G39530 87 / 2e-21 Uncharacterised protein family (UPF0497) (.1) Lus10031873 [exp] 97 / 1e-25 ND 47 / 4e-07 Lus10023416 [exp] 46 / 4e-06 AT2G39530 132 / 4e-39 Uncharacterised protein family (UPF0497) (.1)
Poplar homologues Show only best Show top 10	Locus ID BLAST score/e-value At best hit BLAST score/e-value TAIR10 short description Potri.012G040100 [exp] 89 / 5e-22 AT2G39518 79 / 1e-18 Uncharacterised protein family (UPF0497) (.1) Potri.010G204700 [exp] 47 / 2e-06 AT2G39530 112 / 2e-31 Uncharacterised protein family (UPF0497) (.1)
PFAM info	Clan ID Clan name Pfam ID Pfam name Pfam description CL0396 [flax] [poplar] Marvel-like PF04535 [flax] [poplar] DUF588 Domain of unknown function (DUF588)
Representative CDS sequence Show only first row Show all	>Lus10031874 pacid=23180783 polypeptide=Lus10031874 locus=Lus10031874.g ID=Lus10031874.BGIv1.0 annot-version=v1.0 ATGGCTTCTTCTTCTACCTCTTCGCAGAGCGAATCGTCGAGGATCATGGTCCTGGTTCTGAGGCTGAGCACTCTGCTCCTGATGGTGGCCGCGGCTATGA TCTTGGTCTTCGACACTGCTGAGGTCCAGATTGATCTCAGGAACTTCGTCATCACCCCCACCAAGCTCACTTTCCGGGATCTCATCACTTTCAAGTACTT GGTTGGTGTGGCGGTGATTGTAGTGGTGTACACGGTTATCCAGATTCCTTTCTCGATTCACCACTTGGCCACCGGGAACAGGCTGGCTTGCTTCCCCGAG TTTGATTTCTATGTCGACCAGGTGGTTAGCTATCTGATAGCGACAGCAGTTGGAGCTGGATTCTTCGTTTGTGCCGAACTCAAGACAAATTTGAACAAGA TTCTCCAGTCACTTGAGGAGTCAAACACACAGGGGCTCGGGGATTCGAAGGAAAACTACGATAAATTCGTCAACCATGGATTCCTGGCTTCGGCACTGGT TCTATTCGCCTTCATTTGCATGGCAGCCGTGTCCGTCCTCTCTTCCTTGAACCGCAACAGCAACGAGAAGAAGTCCATCTTCGGCTAA
AA sequence Show only first row Show all	>Lus10031874 pacid=23180783 polypeptide=Lus10031874 locus=Lus10031874.g ID=Lus10031874.BGIv1.0 annot-version=v1.0 MASSSTSSQSESSRIMVLVLRLSTLLLMVAAAMILVFDTAEVQIDLRNFVITPTKLTFRDLITFKYLVGVAVIVVVYTVIQIPFSIHHLATGNRLACFPE FDFYVDQVVSYLIATAVGAGFFVCAELKTNLNKILQSLEESNTQGLGDSKENYDKFVNHGFLASALVLFAFICMAAVSVLSSLNRNSNEKKSIFG

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DESeq2's median of ratios [FLAX]

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Coexpressed genes

Compare expression of checked genes Schematic diagram [FLAX] Schematic diagram [POPLAR]

*If you select 4 or less genes and then press "compare expression", expression will be shown as a graph. If you select more than 4 genes, expresion will be shown as a heat map.
*Color represents relative expression level among samples for each gene.

At best	At TF class	At alias	At description		Locus	MR	r	Symbol	HYP	R_s2_CTR	R_s2_Fox	R_s4_CTR	R_s4_Fox	R_r1_CTR	R_r1_Fox	R_r3_CTR	R_r3_Fox	R_r1s2_CTR	R_r1s2_Fox	R_r3s2_CTR	R_r3s2_Fox	R_s6_CTR	R_s6_Al4	R_s6_Al12	R_s6_Al24	R_s8_CTR	R_s8_Al4	R_s8_Al12	R_s8_Al24	R_r5_CTR	R_r5_Al4	R_r5_Al12	R_r5_Al24	R_r7_CTR	R_r7_Al4	R_r7_Al12	R_r7_Al24	LEAF_N	LEAF_P	LEAF_NPK	SAM	AR_Bet	AR_rdf	cPAR	TOP_Bet	TOP_rdf	iFIBa	iFIBb	MID_Bet	MID_rdf	tFIBa	tFIB_Gr	tFIB_Li	tFIB_Bi	tFIBb	tFIBb_PUL8	tFIBb_PUL24	tFIBb_PUL96	tFIBb_OPP8	tFIBb_OPP24	tFIBb_OPP96	sXYLa	sXYLb	sXYLb_PUL8	sXYLb_PUL24	sXYLb_PUL96	sXYLb_OPP8	sXYLb_OPP24	sXYLb_OPP96
AT2G39530			Uncharacterised protein family...		Lus10031874 [exp]	0	1
AT3G18830		ATPMT5, AtPLT5	ARABIDOPSIS THALIANA POLYOL/MO...		Lus10006308 [exp]	1.4	0.9228
AT5G49130			MATE efflux family protein (.1...		Lus10009788 [exp]	2.4	0.9182
AT4G19185			nodulin MtN21 /EamA-like trans...		Lus10035694 [exp]	6.7	0.8837
AT4G19420			Pectinacetylesterase family pr...		Lus10033305 [exp]	8.4	0.8724
AT3G14920			Peptide-N4-(N-acetyl-beta-gluc...		Lus10025771 [exp]	9.2	0.8769
					Lus10026092 [exp]	9.8	0.8552
AT1G74300			alpha/beta-Hydrolases superfam...		Lus10032809 [exp]	12.0	0.8318
AT4G12520			Bifunctional inhibitor/lipid-t...		Lus10028928 [exp]	16.4	0.8101
AT1G76750			Protein of unknown function (D...		Lus10004598 [exp]	17.9	0.7517
AT2G40370		LAC5	laccase 5 (.1)		Lus10007532 [exp]	19.0	0.8510

Compare expression of checked genes

Lus10031874 coexpression network

*The number of genes in the network is adjusted within 50 genes.
*Gene name represents symbol(s) of closest Arabidopsis gene if symbol(s) for the gene itself doesn't exist.
*Circle diameter represents the number of connection with other genes within this network.
*Color for gene name represents subnetwork based on the result of network clustering.