Plant FIBer expression Database

External link	JGI Phytozome v13 [genome browser]
Symbol
Arabidopsis homologues Show only best Show top 10	Locus ID BLAST score/e-value TF class Alias TAIR10 short description AT2G39530 66 / 2e-13 Uncharacterised protein family (UPF0497) (.1) AT2G39518 61 / 1e-11 Uncharacterised protein family (UPF0497) (.1)
Paralogs Show only best Show top 10	Gene ID BLAST score/e-value At best hit BLAST score/e-value TAIR10 short description Lus10031305 [exp] 200 / 2e-65 AT2G39530 89 / 3e-22 Uncharacterised protein family (UPF0497) (.1) Lus10031304 [exp] 176 / 6e-56 AT2G39518 89 / 3e-22 Uncharacterised protein family (UPF0497) (.1) Lus10031874 [exp] 175 / 2e-55 AT2G39530 92 / 1e-23 Uncharacterised protein family (UPF0497) (.1) Lus10031303 [exp] 144 / 3e-43 AT2G39530 87 / 2e-21 Uncharacterised protein family (UPF0497) (.1) Lus10031873 [exp] 87 / 1e-21 ND 47 / 4e-07 Lus10023416 [exp] 47 / 2e-06 AT2G39530 132 / 4e-39 Uncharacterised protein family (UPF0497) (.1)
Poplar homologues Show only best Show top 10	Locus ID BLAST score/e-value At best hit BLAST score/e-value TAIR10 short description Potri.012G040100 [exp] 75 / 1e-16 AT2G39518 79 / 1e-18 Uncharacterised protein family (UPF0497) (.1) Potri.010G204700 [exp] 40 / 0.0005 AT2G39530 112 / 2e-31 Uncharacterised protein family (UPF0497) (.1)
PFAM info	Clan ID Clan name Pfam ID Pfam name Pfam description CL0396 [flax] [poplar] Marvel-like PF04535 [flax] [poplar] DUF588 Domain of unknown function (DUF588)
Representative CDS sequence Show only first row Show all	>Lus10031875 pacid=23180654 polypeptide=Lus10031875 locus=Lus10031875.g ID=Lus10031875.BGIv1.0 annot-version=v1.0 ATGCATAAACAGAAATTCATCAGGCAAACCAATCACACACCAAGCATTTCGAAATTCGAAAGCAAATCAATCAATGGCTTCTTCTTCTTCTTCGCAGAAC GAATCTTCGAGGACCATGGTCCTGGTTCTGAGGCTGAGCACTCTGCTCCTGGCGGTGGCTGCCGCTCTGGTGCTGGCCTTCGACACCGCCGACGTCCAGC TCGATTCAGAAGCTTCGTCGTCACGCCCACCAAGCTCACTTTCGAGGACCTCATCGCTTTCAAGTACTTGCTTGCTGTGGCTGTGATTGTAGTGGTGTAC ACGGTTATCCAGATTCCATTCTCGATTCACCACTTGGCCACTGGGAAGAGGCTTGCTTGCTTCCTCGAGTTCGATTTCTATGCTGACAAGGTGGTGAGCT ATCTGCTGGCAACAGCGGTTGGTGCGGGATTTCTTGTTTGTGCCGAACTCAGAATCAATCTGAACAAGATTCTCAAGTCCCTTGAACAGTTAGACACACA GGGGCTCGAGGACTCCAAGGAAAACTGCAACAAATTCCTTAACTACGGATTCCTGGCTTCGTCACTGGTTCTCTTAGCCTTCATTTGTATTTTGTATGTC GGTCGTGTCCGTCCTCTCTAA
AA sequence Show only first row Show all	>Lus10031875 pacid=23180654 polypeptide=Lus10031875 locus=Lus10031875.g ID=Lus10031875.BGIv1.0 annot-version=v1.0 MHKQKFIRQTNHTPSISKFESKSINGFFFFFAERIFEDHGPGSEAEHSAPGGGCRSGAGLRHRRRPARFRSFVVTPTKLTFEDLIAFKYLLAVAVIVVVY TVIQIPFSIHHLATGKRLACFLEFDFYADKVVSYLLATAVGAGFLVCAELRINLNKILKSLEQLDTQGLEDSKENCNKFLNYGFLASSLVLLAFICILYV GRVRPL

---

DESeq2's median of ratios [FLAX]

Order by: Tissue Experiment Show only core collection Show again Show schematic diagram

---

Coexpressed genes

Compare expression of checked genes Schematic diagram [FLAX] Schematic diagram [POPLAR]

*If you select 4 or less genes and then press "compare expression", expression will be shown as a graph. If you select more than 4 genes, expresion will be shown as a heat map.
*Color represents relative expression level among samples for each gene.

At best	At TF class	At alias	At description		Locus	MR	r	Symbol	HYP	R_s2_CTR	R_s2_Fox	R_s4_CTR	R_s4_Fox	R_r1_CTR	R_r1_Fox	R_r3_CTR	R_r3_Fox	R_r1s2_CTR	R_r1s2_Fox	R_r3s2_CTR	R_r3s2_Fox	R_s6_CTR	R_s6_Al4	R_s6_Al12	R_s6_Al24	R_s8_CTR	R_s8_Al4	R_s8_Al12	R_s8_Al24	R_r5_CTR	R_r5_Al4	R_r5_Al12	R_r5_Al24	R_r7_CTR	R_r7_Al4	R_r7_Al12	R_r7_Al24	LEAF_N	LEAF_P	LEAF_NPK	SAM	AR_Bet	AR_rdf	cPAR	TOP_Bet	TOP_rdf	iFIBa	iFIBb	MID_Bet	MID_rdf	tFIBa	tFIB_Gr	tFIB_Li	tFIB_Bi	tFIBb	tFIBb_PUL8	tFIBb_PUL24	tFIBb_PUL96	tFIBb_OPP8	tFIBb_OPP24	tFIBb_OPP96	sXYLa	sXYLb	sXYLb_PUL8	sXYLb_PUL24	sXYLb_PUL96	sXYLb_OPP8	sXYLb_OPP24	sXYLb_OPP96
AT2G39530			Uncharacterised protein family...		Lus10031875 [exp]	0	1
AT1G28440		HSL1	HAESA-like 1 (.1)		Lus10024341 [exp]	8.0	0.7572
AT5G53980	HD	ATHB52	homeobox protein 52 (.1)		Lus10003492 [exp]	9.2	0.7955
					Lus10032104 [exp]	29.3	0.7823
AT5G19440			NAD(P)-binding Rossmann-fold s...		Lus10026070 [exp]	45.3	0.7639
AT5G01750			Protein of unknown function (D...		Lus10014154 [exp]	57.5	0.6919
AT5G14360			Ubiquitin-like superfamily pro...		Lus10014884 [exp]	88.0	0.7409
AT5G67240		SDN3	small RNA degrading nuclease 3...		Lus10011505 [exp]	125.3	0.6932
AT5G46940			Plant invertase/pectin methyle...		Lus10015199 [exp]	153.5	0.7117
AT1G69490	NAC	NAP, ANAC029, A...	Arabidopsis NAC domain contain...		Lus10026617 [exp]	160.0	0.6981
AT4G31540		ATEXO70G1	exocyst subunit exo70 family p...		Lus10018672 [exp]	170.1	0.7147

Compare expression of checked genes

Lus10031875 coexpression network

*The number of genes in the network is adjusted within 50 genes.
*Gene name represents symbol(s) of closest Arabidopsis gene if symbol(s) for the gene itself doesn't exist.
*Circle diameter represents the number of connection with other genes within this network.
*Color for gene name represents subnetwork based on the result of network clustering.