Plant FIBer expression Database

External link	JGI Phytozome v13 [genome browser]
Symbol
Arabidopsis homologues Show only best Show top 10	Locus ID BLAST score/e-value TF class Alias TAIR10 short description AT2G01970 947 / 0 Endomembrane protein 70 protein family (.1) AT1G14670 944 / 0 Endomembrane protein 70 protein family (.1) AT5G37310 907 / 0 Endomembrane protein 70 protein family (.1) AT1G08350 553 / 0 Endomembrane protein 70 protein family (.1.2) AT1G10950 397 / 1e-131 AtTMN1 transmembrane nine 1 (.1) AT2G24170 310 / 2e-97 Endomembrane protein 70 protein family (.1) AT1G55130 305 / 2e-95 AtTMN6 transmembrane nine 6, Endomembrane protein 70 protein family (.1) AT3G13772 305 / 2e-95 AtTMN7 transmembrane nine 7 (.1) AT5G10840 298 / 2e-92 Endomembrane protein 70 protein family (.1) AT5G25100 297 / 2e-92 Endomembrane protein 70 protein family (.1.2)
Paralogs Show only best Show top 10	Gene ID BLAST score/e-value At best hit BLAST score/e-value TAIR10 short description Lus10031308 [exp] 1050 / 0 AT2G01970 1061 / 0.0 Endomembrane protein 70 protein family (.1) Lus10042286 [exp] 1033 / 0 AT2G01970 1061 / 0.0 Endomembrane protein 70 protein family (.1) Lus10026371 [exp] 887 / 0 AT2G01970 912 / 0.0 Endomembrane protein 70 protein family (.1) Lus10004873 [exp] 536 / 0 AT1G08350 668 / 0.0 Endomembrane protein 70 protein family (.1.2) Lus10001368 [exp] 393 / 6e-130 AT1G10950 990 / 0.0 transmembrane nine 1 (.1) Lus10001291 [exp] 390 / 9e-129 AT1G10950 1000 / 0.0 transmembrane nine 1 (.1) Lus10012697 [exp] 365 / 9e-118 AT1G10950 947 / 0.0 transmembrane nine 1 (.1) Lus10015463 [exp] 342 / 2e-110 AT1G10950 910 / 0.0 transmembrane nine 1 (.1) Lus10037643 [exp] 313 / 2e-98 AT3G13772 1134 / 0.0 transmembrane nine 7 (.1)
Poplar homologues Show only best Show top 10	Locus ID BLAST score/e-value At best hit BLAST score/e-value TAIR10 short description Potri.017G144181 [exp] 928 / 0 AT5G37310 979 / 0.0 Endomembrane protein 70 protein family (.1) Potri.017G144241 [exp] 928 / 0 AT5G37310 989 / 0.0 Endomembrane protein 70 protein family (.1) Potri.004G075450 [exp] 913 / 0 AT5G37310 953 / 0.0 Endomembrane protein 70 protein family (.1) Potri.012G042300 [exp] 785 / 0 AT1G14670 762 / 0.0 Endomembrane protein 70 protein family (.1) Potri.004G203200 [exp] 558 / 0 AT1G08350 671 / 0.0 Endomembrane protein 70 protein family (.1.2) Potri.004G075525 [exp] 534 / 0 AT5G37310 523 / 0.0 Endomembrane protein 70 protein family (.1) Potri.004G218300 [exp] 423 / 1e-141 AT1G10950 920 / 0.0 transmembrane nine 1 (.1) Potri.003G015300 [exp] 416 / 5e-139 AT1G10950 897 / 0.0 transmembrane nine 1 (.1) Potri.003G038700 [exp] 314 / 6e-99 AT3G13772 1085 / 0.0 transmembrane nine 7 (.1) Potri.018G018400 [exp] 303 / 1e-94 AT5G10840 1070 / 0.0 Endomembrane protein 70 protein family (.1)
PFAM info	Clan ID Clan name Pfam ID Pfam name Pfam description PF02990 [flax] [poplar] EMP70 Endomembrane protein 70
Representative CDS sequence Show only first row Show all	>Lus10031876 pacid=23180758 polypeptide=Lus10031876 locus=Lus10031876.g ID=Lus10031876.BGIv1.0 annot-version=v1.0 ATGGCGGGGAAGAAGGTGGTGGCGTTTCTCTTCGTCGCCGTCTTGGTCGCGTTAGGAGCGGATCAGGTGAGATCTGACGCCTCTGATCACCGATACAAAG ATGGAGATCAGGTGCCTCTTTACGCCAATAAGGTCGGGCCGTTTCACAACCCGAGTGAAACATACCGTTATTTTGACCTTCCGTTCTGCTATCCAGCACA TATGAAAGAAAAGAAGGAAGCTCTTGGTGAAGTACTGAATGGGGATCGGTTAGTTAGCGCTCCTTACCAGCTCGACTTTCTTCGTGAGAAGGACTCTGAA GTTGTTTGCAAGAAAAGGCTCTCAAGGGAAGAAGTCGGCCAGTTCAGAGCTGCTGTTAAGAAGGATTACTACTTCCAGATGTACTATGATGACTTGCCAA TCTGGGGGTTCATAGGGAAGGTTGACAAGGAAGGAAAAGACCCCAGCGATTACAAATATTACCTATTCAAGCACATTCACTTTGATATATTCTACAACAA GGATAGGGTGATTGAGATTAATGTCCGTACTGATCCCAGTGTGCTGGTGGATGTCACCGAGGATAAAGAAGTTGATGTGGAATTTTTTTACACTGTCAAG TGGAAAGAAACCAACACTCCTTTTGATAACAGGATGGACAAGTATTCTCAGTCTTCTTCGTTGCCTCATCATTTGGAGATTCACTGGTTCTCGATCATAA ATTCTTGCGTAACGGTTCTCCTCCTGACTGGGTTCTTGGCTACAATTCTCATGCGAGTGCTTAAGAACGATTTTGTCAAGTATGCCCATGATGAGGAAGC TGCTGATGACCAGGAAGAGACAGGCTGGAAATATATCCATGGAGATGTGTTCAGATATCCAAAATACAAGTCCCTATTTGCTGCATCTCTTGGTTCTGGA ACCCAATTATTCACTCTGACTGTGTTCATCTTTTTACTGGCATTGGTTGGGGTGTTTTACCCGTACAATAGGGGAGCCCTGTTCACTGCTTTGGTTGTCA TATATGCCCTCACATCAGGAATTGCAGGATACACAGCAACTTCTTTCTACTGTCAACTCGAAGGATCTAACTGGGTTAGAAATCTGTTGCTGACTGGATG CCTCTTCTGCGGGCCTCTTTTCCTCACATTCTGTTTCCTTAACACTGTTGCAATCGTCTACACTGCCACTGCTGCTCTTCCCTTCGGAACAATTTGTGTG ATAGTGCTCATATGGACGCTAGTGACTTCCCCTCTACTTGTCTTGGGCGGAATTGCGGGCAAAAATAGCAAGGCTGAGTTCCAAGCTCCCTGCCGCACAA CCAAATACCCCAGAGAGATCCCACCACTACCATGGTACAGAGGGACCCTTCCACAGATGGCAATGGCTGGATTTCTACCATTCAGTGCTATCTACATCGA GCTCTACTACATCTTTGCCAGTGTTTGGGGTCACAGGATTTACACCATCTACAGCATCTTGTTTATCGTCTTCATCATTCTCCTGATAGTCACTGCTTTC ATTACTGTGGCTCTGACCTATTTCCAACTCGCTGCTGAGGATCATGAGTGGTGGTGGAGGTCCTTCCTATGCGGTGGATCAACCGGGTTATTTATCTACG CCTACTGCCTCTACTACTACTATGCACGCTCCGACATGTCCGGATTCATGCAAACGTCCTTCTTCTTTGGGTACATGGCTTGCATCTGCTACGGCTTCTT CCTCATGCTCGGAACCGTAGGCTTCCGCGCTGCCCTGTTATTCGTCCGCCACATATACCGATCCATCAAGTGCGAGTAG
AA sequence Show only first row Show all	>Lus10031876 pacid=23180758 polypeptide=Lus10031876 locus=Lus10031876.g ID=Lus10031876.BGIv1.0 annot-version=v1.0 MAGKKVVAFLFVAVLVALGADQVRSDASDHRYKDGDQVPLYANKVGPFHNPSETYRYFDLPFCYPAHMKEKKEALGEVLNGDRLVSAPYQLDFLREKDSE VVCKKRLSREEVGQFRAAVKKDYYFQMYYDDLPIWGFIGKVDKEGKDPSDYKYYLFKHIHFDIFYNKDRVIEINVRTDPSVLVDVTEDKEVDVEFFYTVK WKETNTPFDNRMDKYSQSSSLPHHLEIHWFSIINSCVTVLLLTGFLATILMRVLKNDFVKYAHDEEAADDQEETGWKYIHGDVFRYPKYKSLFAASLGSG TQLFTLTVFIFLLALVGVFYPYNRGALFTALVVIYALTSGIAGYTATSFYCQLEGSNWVRNLLLTGCLFCGPLFLTFCFLNTVAIVYTATAALPFGTICV IVLIWTLVTSPLLVLGGIAGKNSKAEFQAPCRTTKYPREIPPLPWYRGTLPQMAMAGFLPFSAIYIELYYIFASVWGHRIYTIYSILFIVFIILLIVTAF ITVALTYFQLAAEDHEWWWRSFLCGGSTGLFIYAYCLYYYYARSDMSGFMQTSFFFGYMACICYGFFLMLGTVGFRAALLFVRHIYRSIKCE

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DESeq2's median of ratios [FLAX]

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Coexpressed genes

Compare expression of checked genes Schematic diagram [FLAX] Schematic diagram [POPLAR]

*If you select 4 or less genes and then press "compare expression", expression will be shown as a graph. If you select more than 4 genes, expresion will be shown as a heat map.
*Color represents relative expression level among samples for each gene.

At best	At TF class	At alias	At description		Locus	MR	r	Symbol	HYP	R_s2_CTR	R_s2_Fox	R_s4_CTR	R_s4_Fox	R_r1_CTR	R_r1_Fox	R_r3_CTR	R_r3_Fox	R_r1s2_CTR	R_r1s2_Fox	R_r3s2_CTR	R_r3s2_Fox	R_s6_CTR	R_s6_Al4	R_s6_Al12	R_s6_Al24	R_s8_CTR	R_s8_Al4	R_s8_Al12	R_s8_Al24	R_r5_CTR	R_r5_Al4	R_r5_Al12	R_r5_Al24	R_r7_CTR	R_r7_Al4	R_r7_Al12	R_r7_Al24	LEAF_N	LEAF_P	LEAF_NPK	SAM	AR_Bet	AR_rdf	cPAR	TOP_Bet	TOP_rdf	iFIBa	iFIBb	MID_Bet	MID_rdf	tFIBa	tFIB_Gr	tFIB_Li	tFIB_Bi	tFIBb	tFIBb_PUL8	tFIBb_PUL24	tFIBb_PUL96	tFIBb_OPP8	tFIBb_OPP24	tFIBb_OPP96	sXYLa	sXYLb	sXYLb_PUL8	sXYLb_PUL24	sXYLb_PUL96	sXYLb_OPP8	sXYLb_OPP24	sXYLb_OPP96
AT2G01970			Endomembrane protein 70 protei...		Lus10031876 [exp]	0	1
AT2G01970			Endomembrane protein 70 protei...		Lus10031308 [exp]	1.0	0.9864
AT3G26370			O-fucosyltransferase family pr...		Lus10006227 [exp]	2.2	0.9503
AT4G12650			Endomembrane protein 70 protei...		Lus10016072 [exp]	2.4	0.9614
AT1G62020			Coatomer, alpha subunit (.1)		Lus10035883 [exp]	3.0	0.9551
AT2G40980			Protein kinase superfamily pro...		Lus10035407 [exp]	4.5	0.9272
AT5G10840			Endomembrane protein 70 protei...		Lus10026254 [exp]	4.5	0.9516
AT1G62020			Coatomer, alpha subunit (.1)		Lus10040752 [exp]	5.5	0.9442
AT5G08530		CI51	51 kDa subunit of complex I (....		Lus10015808 [exp]	5.7	0.9126
AT1G64650			Major facilitator superfamily ...		Lus10000337 [exp]	6.0	0.9409
AT1G13860		QUL1	QUASIMODO2 LIKE 1 (.1.2.3.4)		Lus10036883 [exp]	6.3	0.9411

Compare expression of checked genes

Lus10031876 coexpression network

*The number of genes in the network is adjusted within 50 genes.
*Gene name represents symbol(s) of closest Arabidopsis gene if symbol(s) for the gene itself doesn't exist.
*Circle diameter represents the number of connection with other genes within this network.
*Color for gene name represents subnetwork based on the result of network clustering.