Plant FIBer expression Database

External link	JGI Phytozome v13 [genome browser]
Symbol
Arabidopsis homologues Show only best Show top 10	Locus ID BLAST score/e-value TF class Alias TAIR10 short description AT3G08590 946 / 0 iPGAM2 2,3-biphosphoglycerate-independent phosphoglycerate mutase 2, Phosphoglycerate mutase, 2,3-bisphosphoglycerate-independent (.1.2) AT1G09780 932 / 0 iPGAM1 2,3-biphosphoglycerate-independent phosphoglycerate mutase 1, Phosphoglycerate mutase, 2,3-bisphosphoglycerate-independent (.1)
Paralogs Show only best Show top 10	Gene ID BLAST score/e-value At best hit BLAST score/e-value TAIR10 short description Lus10031309 [exp] 1112 / 0 AT3G08590 977 / 0.0 2,3-biphosphoglycerate-independent phosphoglycerate mutase 2, Phosphoglycerate mutase, 2,3-bisphosphoglycerate-independent (.1.2) Lus10042283 [exp] 1029 / 0 AT3G08590 993 / 0.0 2,3-biphosphoglycerate-independent phosphoglycerate mutase 2, Phosphoglycerate mutase, 2,3-bisphosphoglycerate-independent (.1.2) Lus10026370 [exp] 1028 / 0 AT3G08590 992 / 0.0 2,3-biphosphoglycerate-independent phosphoglycerate mutase 2, Phosphoglycerate mutase, 2,3-bisphosphoglycerate-independent (.1.2)
Poplar homologues Show only best Show top 10	Locus ID BLAST score/e-value At best hit BLAST score/e-value TAIR10 short description Potri.016G142900 [exp] 1005 / 0 AT1G09780 927 / 0.0 2,3-biphosphoglycerate-independent phosphoglycerate mutase 1, Phosphoglycerate mutase, 2,3-bisphosphoglycerate-independent (.1) Potri.006G113300 [exp] 997 / 0 AT3G08590 989 / 0.0 2,3-biphosphoglycerate-independent phosphoglycerate mutase 2, Phosphoglycerate mutase, 2,3-bisphosphoglycerate-independent (.1.2)
PFAM info	Clan ID Clan name Pfam ID Pfam name Pfam description CL0088 [flax] [poplar] Alk_phosphatase PF01676 [flax] [poplar] Metalloenzyme Metalloenzyme superfamily CL0088 [flax] [poplar] PF06415 [flax] [poplar] iPGM_N BPG-independent PGAM N-terminus (iPGM_N)
Representative CDS sequence Show only first row Show all	>Lus10031877 pacid=23180817 polypeptide=Lus10031877 locus=Lus10031877.g ID=Lus10031877.BGIv1.0 annot-version=v1.0 ATGGGAAGCTCCGGCGGAAGCGCATGGAAGCTGGCGGATCATCCGAAGCTTCCCAAGGGGAAGACGATCGCCATGATTGTGTTGGACGGTTGGGGTGAGG CGAACCCAGATCCGTATAATTGCATCCACGTTGCCGAGACTCCAACCATGGATTCCTTCAAGCAGACTGCGCCTGAGAAGTGGAGGTTGATTAAGGCCCA TGGAACTGCGGTGGGTCTCCCGAGCGACGATGACATGGGGAACAGTGAAGTTGGTCACAATGCTCTTGGTGCTGGACGCATCTATGCTCAAGGTGCTAAG CTCGTTGATCTTGCACTAGCATCCGGAAAGATCTTCGACGGAGAGGGATTCAAGTATATCCAGCAGTCCTTTGATAAGGGAACATTGCACCTCATTGGCT TACTGAGTGATGGTGGTGTTCATTCCAGGCTTGATCAAGTGCAGTTGTTGCTTAAAGGTGCTAGTGAGCGTGGTGTCAAAAGAGTCCGTGTTCACATCCT TACTGATGGGCGTGATGTGATAGACGGCACAAGTGTTGCCTTTGTCGAAACTCTCGAGAATGATCTTGCCAAGTTGCGGGAGAAGGGCATTGATGCGCAG GTTGCATCCGGTGGAGGTCGAATGCATGTGACAATGGATCGTTACGAGAATGACTGGGATGTTGTCAAACGAGGATGGGACGCCCAGGTTCTTGGGGAAG CGCCTCACAAGTTTAAGAACCCAGTAGAAGCTGTGAAAAAGCTAAGGAAAACTCAAACTCCCAAGGCCAATGACCAATACTTGCCTCCTTTTGTTATTGT CGACGACAGTGGGAAGCCTGTTGGGCCGATCGTCGATGGTGATGCAGTTGTCACGTTCAACTTCCGAGCTGACCGTATGGTTATGCTTGCAAAGGCTCTC GAGTACAAGGATTTCGACAAATTCGACCGTGTAAGATTTCCCAAGATCAACTATGCTGGAATGCTCCAGTACGATGGCGAGTTGAAGCTTCCTAGCCATT ACCTTGTGTCTCCTCCGGAAATCGAGAGGACGTCCGGTGAATATTTGGTGCATAATGGTGTCCGTACATTTGCCTGCAGTGAGACGGTCAAGTTTGGTCA TGTTACGTTCTTCTGGAACGGGAATCGATCGGGTTGCTTCAACTCGGAAATGGAAGAGTACGTAGAGATACCAAGTGATGTCGGAATCACATTCAACGTT AAACCAAAGATGAAGGCTTTGGAGATTGCAGAGAAGGCACGAGATGCAATCCTCAGTGGGAAATTCCATCAGGTTCGTGTTAACCTACCGAATGGGGACA TGGTCGGACACACGGGAGACGTCGAAGCTACTGTTGTCAGTTGCAAGGCTGCTGATGAAGCCGTCAAGATGATGATCGATGCGATCGAGCAAGTGGGCGG AATCTACGTGGTGACAGCAGATCATGGAAACGCAGAGGACATGGTGAAGAGAGACAAATCTGGGAAGCCGATGCTGGACAAGAGCGGCAGCGTCCAAATC CTGACCTCCCACACCCTCCAACCAGTCCCCATTGCAATCGGTGGCCCCGGACTGGCACCAGGGGTGAGGTTCCGCAGCGATGTCCCAACAGGCGGTCTGG CGAATGTCGCAGCTACCGTGATCAATCTCCATGGATTCGAAGCTCCGAGTGACTACGAGACCACCCTGATCGAAGTGGTGGATAAGTAA
AA sequence Show only first row Show all	>Lus10031877 pacid=23180817 polypeptide=Lus10031877 locus=Lus10031877.g ID=Lus10031877.BGIv1.0 annot-version=v1.0 MGSSGGSAWKLADHPKLPKGKTIAMIVLDGWGEANPDPYNCIHVAETPTMDSFKQTAPEKWRLIKAHGTAVGLPSDDDMGNSEVGHNALGAGRIYAQGAK LVDLALASGKIFDGEGFKYIQQSFDKGTLHLIGLLSDGGVHSRLDQVQLLLKGASERGVKRVRVHILTDGRDVIDGTSVAFVETLENDLAKLREKGIDAQ VASGGGRMHVTMDRYENDWDVVKRGWDAQVLGEAPHKFKNPVEAVKKLRKTQTPKANDQYLPPFVIVDDSGKPVGPIVDGDAVVTFNFRADRMVMLAKAL EYKDFDKFDRVRFPKINYAGMLQYDGELKLPSHYLVSPPEIERTSGEYLVHNGVRTFACSETVKFGHVTFFWNGNRSGCFNSEMEEYVEIPSDVGITFNV KPKMKALEIAEKARDAILSGKFHQVRVNLPNGDMVGHTGDVEATVVSCKAADEAVKMMIDAIEQVGGIYVVTADHGNAEDMVKRDKSGKPMLDKSGSVQI LTSHTLQPVPIAIGGPGLAPGVRFRSDVPTGGLANVAATVINLHGFEAPSDYETTLIEVVDK

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DESeq2's median of ratios [FLAX]

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Coexpressed genes

Compare expression of checked genes Schematic diagram [FLAX] Schematic diagram [POPLAR]

*If you select 4 or less genes and then press "compare expression", expression will be shown as a graph. If you select more than 4 genes, expresion will be shown as a heat map.
*Color represents relative expression level among samples for each gene.

At best	At TF class	At alias	At description		Locus	MR	r	Symbol	HYP	R_s2_CTR	R_s2_Fox	R_s4_CTR	R_s4_Fox	R_r1_CTR	R_r1_Fox	R_r3_CTR	R_r3_Fox	R_r1s2_CTR	R_r1s2_Fox	R_r3s2_CTR	R_r3s2_Fox	R_s6_CTR	R_s6_Al4	R_s6_Al12	R_s6_Al24	R_s8_CTR	R_s8_Al4	R_s8_Al12	R_s8_Al24	R_r5_CTR	R_r5_Al4	R_r5_Al12	R_r5_Al24	R_r7_CTR	R_r7_Al4	R_r7_Al12	R_r7_Al24	LEAF_N	LEAF_P	LEAF_NPK	SAM	AR_Bet	AR_rdf	cPAR	TOP_Bet	TOP_rdf	iFIBa	iFIBb	MID_Bet	MID_rdf	tFIBa	tFIB_Gr	tFIB_Li	tFIB_Bi	tFIBb	tFIBb_PUL8	tFIBb_PUL24	tFIBb_PUL96	tFIBb_OPP8	tFIBb_OPP24	tFIBb_OPP96	sXYLa	sXYLb	sXYLb_PUL8	sXYLb_PUL24	sXYLb_PUL96	sXYLb_OPP8	sXYLb_OPP24	sXYLb_OPP96
AT3G08590		iPGAM2	2,3-biphosphoglycerate-indepen...		Lus10031877 [exp]	0	1
AT3G16050		A37, ATPDX1.2	ARABIDOPSIS THALIANA PYRIDOXIN...		Lus10011450 [exp]	2.4	0.9309
AT5G02500		AtHsp70-1, AT-H...	HEAT SHOCK PROTEIN 70-1, ARABI...		Lus10005953 [exp]	2.4	0.9351
AT3G17880		ATHIP2, ATTDX	HSC-70 INTERACTING PROTEIN, AR...		Lus10031334 [exp]	2.4	0.9252
AT2G28910		CXIP4	CAX interacting protein 4 (.1)		Lus10016543 [exp]	5.7	0.8567
AT3G12050			Aha1 domain-containing protein...		Lus10017240 [exp]	7.2	0.9193
AT5G16420			Pentatricopeptide repeat (PPR-...		Lus10030223 [exp]	8.8	0.8638
AT2G20810		GAUT10, LGT4	galacturonosyltransferase 10 (...		Lus10039785 [exp]	9.6	0.8486
AT4G21320		HSA32	HEAT-STRESS-ASSOCIATED 32, Ald...		Lus10018387 [exp]	10.2	0.9018
AT5G42820	C3HZnF	ATU2AF35B	Zinc finger C-x8-C-x5-C-x3-H t...		Lus10009389 [exp]	11.2	0.8645
AT5G45420	MYB	maMYB	membrane anchored MYB, Duplica...		Lus10018605 [exp]	12.2	0.8812

Compare expression of checked genes

Lus10031877 coexpression network

*The number of genes in the network is adjusted within 50 genes.
*Gene name represents symbol(s) of closest Arabidopsis gene if symbol(s) for the gene itself doesn't exist.
*Circle diameter represents the number of connection with other genes within this network.
*Color for gene name represents subnetwork based on the result of network clustering.