Plant FIBer expression Database

External link	JGI Phytozome v13 [genome browser]
Symbol
Arabidopsis homologues Show only best Show top 10	Locus ID BLAST score/e-value TF class Alias TAIR10 short description AT2G01900 137 / 3e-38 DNAse I-like superfamily protein (.1) AT2G37440 102 / 5e-25 DNAse I-like superfamily protein (.1.2) AT3G63240 71 / 5e-14 DNAse I-like superfamily protein (.1) AT2G32010 67 / 9e-13 CVL1 CVP2 like 1 (.1.2) AT5G04980 67 / 1e-12 DNAse I-like superfamily protein (.1.2) AT1G05470 66 / 2e-12 CVP2 COTYLEDON VASCULAR PATTERN 2, DNAse I-like superfamily protein (.1) AT5G65090 66 / 3e-12 DER4, MRH3, BST1 DEFORMED ROOT HAIRS 4, BRISTLED 1, DNAse I-like superfamily protein (.1.2) AT1G71710 63 / 3e-11 DNAse I-like superfamily protein (.1.2) AT1G34120 62 / 4e-11 AT5PTASE1, ATIP5PI, AT5P1, IP5PI MYO-INOSITOL POLYPHOSPHATE 5-PHOSPHATASE 1, inositol polyphosphate 5-phosphatase I (.1.2.3) AT4G18010 59 / 6e-10 AT5PTASE2, IP5PII INOSITOL\(1,4,5\)P3 5-PHOSPHATASE II, myo-inositol polyphosphate 5-phosphatase 2 (.1.2)
Paralogs Show only best Show top 10	Gene ID BLAST score/e-value At best hit BLAST score/e-value TAIR10 short description Lus10031310 [exp] 278 / 2e-93 AT2G01900 320 / 3e-107 DNAse I-like superfamily protein (.1) Lus10022074 [exp] 81 / 3e-17 AT3G63240 298 / 7e-96 DNAse I-like superfamily protein (.1) Lus10028884 [exp] 74 / 4e-15 AT5G04980 526 / 0.0 DNAse I-like superfamily protein (.1.2) Lus10028697 [exp] 72 / 2e-14 AT1G71710 675 / 0.0 DNAse I-like superfamily protein (.1.2) Lus10006904 [exp] 72 / 3e-14 AT3G63240 711 / 0.0 DNAse I-like superfamily protein (.1) Lus10028727 [exp] 72 / 3e-14 AT1G71710 674 / 0.0 DNAse I-like superfamily protein (.1.2) Lus10014684 [exp] 72 / 4e-14 AT3G63240 635 / 0.0 DNAse I-like superfamily protein (.1) Lus10039352 [exp] 69 / 3e-13 AT2G32010 894 / 0.0 CVP2 like 1 (.1.2) Lus10033398 [exp] 69 / 3e-13 AT5G04980 540 / 0.0 DNAse I-like superfamily protein (.1.2)
Poplar homologues Show only best Show top 10	Locus ID BLAST score/e-value At best hit BLAST score/e-value TAIR10 short description Potri.015G032200 [exp] 166 / 7e-49 AT2G01900 476 / 1e-166 DNAse I-like superfamily protein (.1) Potri.012G041600 [exp] 158 / 1e-45 AT2G01900 472 / 3e-165 DNAse I-like superfamily protein (.1) Potri.010G101700 [exp] 144 / 2e-40 AT2G01900 537 / 0.0 DNAse I-like superfamily protein (.1) Potri.008G139600 [exp] 140 / 3e-39 AT2G01900 521 / 0.0 DNAse I-like superfamily protein (.1) Potri.017G074200 [exp] 75 / 2e-15 AT2G37440 328 / 8e-108 DNAse I-like superfamily protein (.1.2) Potri.005G078000 [exp] 71 / 7e-14 AT5G65090 666 / 0.0 DEFORMED ROOT HAIRS 4, BRISTLED 1, DNAse I-like superfamily protein (.1.2) Potri.005G212700 [exp] 69 / 2e-13 AT3G63240 778 / 0.0 DNAse I-like superfamily protein (.1) Potri.008G011000 [exp] 68 / 4e-13 AT5G04980 534 / 0.0 DNAse I-like superfamily protein (.1.2) Potri.002G050000 [exp] 68 / 6e-13 AT3G63240 785 / 0.0 DNAse I-like superfamily protein (.1) Potri.008G155700 [exp] 67 / 9e-13 AT2G32010 914 / 0.0 CVP2 like 1 (.1.2)
PFAM info	Clan ID Clan name Pfam ID Pfam name Pfam description CL0530 [flax] [poplar] DNase_I-like PF03372 [flax] [poplar] Exo_endo_phos Endonuclease/Exonuclease/phosphatase family
Representative CDS sequence Show only first row Show all	>Lus10031878 pacid=23180613 polypeptide=Lus10031878 locus=Lus10031878.g ID=Lus10031878.BGIv1.0 annot-version=v1.0 ATGCTTCGGTTGGGAACCAACACCAACAACTTCGTCGCAGACTTTCCCTCCACCGTAACCACTTCTCCTCCTCCTCCTCCTCCCTCGCCGCCGGCAGCCG GAAGCACGTCATCCGGTGACCATCAACCACAGGAAGTCTACAAGCTGTTCGTCGGTTCATGGAACGTCGGCGGGATCTCGCCGCCGGTGGATTTGGACCT CCAAGATTGGCTCAGCCTCCATAATGACGACGTCGAAGAAGAAGACGGCGCCGGTTCTCTTTCCCTAACCTTTATGTTCTTGGGTAAGTTCCAGGAGATT GTGCCGCTGAATGCGGGGAACATAATCCTAGGTTCAACCGAAAACATCATCAACAACAACAACAACATTTCCTTGAGGTGGAACTCAACAATAAGGGCAG CTCTCAACGGAAATATTAACCACGAAGAAAACGACGACGTTCGGAGTAAATTAGAATACGAATGCTTGATGAGCAAACAGATGGTCGGAATATTCATCAC CGGATCGGTGTCGGTGAGGTTCTTCGTGGAGAAGACGAGCTTCTGCTTCGTCTGCAGCCATCTAGCGTCGGGAGGGAGAGAAGGCGACGAGAAGTACCGA AACGCCAACGCCGGCGAGATACTATCACGTACCAACTTCCGCCGGGCATGGGGCCACTTGCACAACTTGCCTCGCAAAATCCTACATCACACATCAAGAG TACGTTGTTAA
AA sequence Show only first row Show all	>Lus10031878 pacid=23180613 polypeptide=Lus10031878 locus=Lus10031878.g ID=Lus10031878.BGIv1.0 annot-version=v1.0 MLRLGTNTNNFVADFPSTVTTSPPPPPPSPPAAGSTSSGDHQPQEVYKLFVGSWNVGGISPPVDLDLQDWLSLHNDDVEEEDGAGSLSLTFMFLGKFQEI VPLNAGNIILGSTENIINNNNNISLRWNSTIRAALNGNINHEENDDVRSKLEYECLMSKQMVGIFITGSVSVRFFVEKTSFCFVCSHLASGGREGDEKYR NANAGEILSRTNFRRAWGHLHNLPRKILHHTSRVRC

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DESeq2's median of ratios [FLAX]

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Coexpressed genes

Compare expression of checked genes Schematic diagram [FLAX] Schematic diagram [POPLAR]

*If you select 4 or less genes and then press "compare expression", expression will be shown as a graph. If you select more than 4 genes, expresion will be shown as a heat map.
*Color represents relative expression level among samples for each gene.

At best	At TF class	At alias	At description		Locus	MR	r	Symbol	HYP	R_s2_CTR	R_s2_Fox	R_s4_CTR	R_s4_Fox	R_r1_CTR	R_r1_Fox	R_r3_CTR	R_r3_Fox	R_r1s2_CTR	R_r1s2_Fox	R_r3s2_CTR	R_r3s2_Fox	R_s6_CTR	R_s6_Al4	R_s6_Al12	R_s6_Al24	R_s8_CTR	R_s8_Al4	R_s8_Al12	R_s8_Al24	R_r5_CTR	R_r5_Al4	R_r5_Al12	R_r5_Al24	R_r7_CTR	R_r7_Al4	R_r7_Al12	R_r7_Al24	LEAF_N	LEAF_P	LEAF_NPK	SAM	AR_Bet	AR_rdf	cPAR	TOP_Bet	TOP_rdf	iFIBa	iFIBb	MID_Bet	MID_rdf	tFIBa	tFIB_Gr	tFIB_Li	tFIB_Bi	tFIBb	tFIBb_PUL8	tFIBb_PUL24	tFIBb_PUL96	tFIBb_OPP8	tFIBb_OPP24	tFIBb_OPP96	sXYLa	sXYLb	sXYLb_PUL8	sXYLb_PUL24	sXYLb_PUL96	sXYLb_OPP8	sXYLb_OPP24	sXYLb_OPP96
AT2G01900			DNAse I-like superfamily prote...		Lus10031878 [exp]	0	1

Compare expression of checked genes

Lus10031878 coexpression network

*The number of genes in the network is adjusted within 50 genes.
*Gene name represents symbol(s) of closest Arabidopsis gene if symbol(s) for the gene itself doesn't exist.
*Circle diameter represents the number of connection with other genes within this network.
*Color for gene name represents subnetwork based on the result of network clustering.