Plant FIBer expression Database

External link	JGI Phytozome v13 [genome browser]
Symbol
Arabidopsis homologues Show only best Show top 10	Locus ID BLAST score/e-value TF class Alias TAIR10 short description AT1G48430 773 / 0 Dihydroxyacetone kinase (.1) AT3G17770 756 / 0 Dihydroxyacetone kinase (.1)
Paralogs Show only best Show top 10	Gene ID BLAST score/e-value At best hit BLAST score/e-value TAIR10 short description Lus10031311 [exp] 961 / 0 AT3G17770 899 / 0.0 Dihydroxyacetone kinase (.1)
Poplar homologues Show only best Show top 10	Locus ID BLAST score/e-value At best hit BLAST score/e-value TAIR10 short description Potri.012G041100 [exp] 823 / 0 AT1G48430 897 / 0.0 Dihydroxyacetone kinase (.1) Potri.015G032500 [exp] 816 / 0 AT1G48430 887 / 0.0 Dihydroxyacetone kinase (.1) Potri.011G011650 [exp] 60 / 1e-11 AT3G17770 98 / 6e-26 Dihydroxyacetone kinase (.1)
PFAM info	Clan ID Clan name Pfam ID Pfam name Pfam description CL0245 [flax] [poplar] EDD PF02733 [flax] [poplar] Dak1 Dak1 domain CL0245 [flax] [poplar] PF02734 [flax] [poplar] Dak2 DAK2 domain
Representative CDS sequence Show only first row Show all	>Lus10031879 pacid=23180583 polypeptide=Lus10031879 locus=Lus10031879.g ID=Lus10031879.BGIv1.0 annot-version=v1.0 ATGGCGTCCACTGCCAAGAAGCTCATCAACGACCCCAACGATGTTGTGACCGAGTTCATCGAGGGTCTTGTCGAATCATATCCTGGGATGCAGTATCTGG ACGGTTTCCCAGAGGTCAAGGTTGTGTTACGTGCTGATGTGTCTGGCGCCACAAATGATAAAGTTGCTGTCATATCAGGAGGAGGAAGTGGCCATGAACC TGCTCATGCTGGGTTTGTTGGAGAAGGGATGCTTACTGCTGCCGTATGTGGAGATGTCTTTGCATCTCCACAAGTTGATTCAATACTAGCTGGCATTCGA GCTGTAACGGGTCCCATGGGATGTCTTCTAATTGTCAAGAACTATACTGGTGACCGTCTGAATTTTGGATTGGCTGCTGAGCAGGCGAAATCGGAAGGTT ACAAAGTTGAGGTTGCCGGTGCTGCTGCAGCTGTTGGACTTTCTCTTGCTGATGTTGCGGCAGAAGCAAAGCGTGCATCTGCATTCATTGGAACCATGGG CGTAGCATTATCAGTTTGCACACTGCCAGGGCAAGTCACACCCGATCGTCTAGGCCCGGGAAAAATGGAACTCGGTCTTGGAATTCACGGTGAACCTGGT GCTGCTGTGGCCGACATTCAGCCTGTCGGAGTTGTGGTCTCTCATGTACTAAAGCAAATTCTGTCTCAGGAAACTAATTACGTTCCAATTACTCGTGGCT GTCAAGTGGTGATCATGGTCAACGGATTAGGTGCAACCCCTCCAATGGAGCTAATGATTGTCGCTGGGAAAGCTGTACCTCAACTGCAGCTCGAACATGG ATTAGCCGTAGAGAGAGTTTATACCGGATCATTTATGACTTCTCTTGATATGGCAGGAATTTCAATTACTATAATGAAGGCAGATCAGGTGATTCTTGAA CGCCTGGATGCTGCAACCAAGGCACCATATTGGCCAGTCGGGGTAGATGGTAACCGTCCACCCGCGAAGATACCAGTTCCTCTCCCACAATCTCCTACAA CAAGAAGCGATGTGTCCTTGGGCCGACCAACCGAGCTAAGTGAACAAGGGATCATTCTTGAGGTGGCTATTGAAGCAGCAGCAAGTGCAGTAGTAAACCT TAAGGATCCCTTAAATGAATGGGACAGCAAAGTAGGGGACGGTGACTGTGGATCAACCATGTACAGAGGCGCAACGGCTATCTTGGATGATATGAAAAGA TATTATCCAGTGAACGATGCAGCAGAAACAATTAACGAAATGGGATCGTCTATTAGCAGAGTGATGGGTGGAACAAGTGGAATCATATACACTATACTAG CCAAGGCAGCATACGCAAGCCTGAAAGCAACCACTCAGTCAGCTGTAACATCAAAACAATGGGCTGAAGCACTGGAAGCTTCGATAACGGCAGTAAGTAA ATACGGCGGAGCTTCTGCTGGTTACCGGACACTACTAGATGCTCTCATTCCAGCTTTGGAAGTTCTTCAGCAGAGGCTAAATGCTGGGGATGACCCTGTT GCTGCCTTTGTTCTTTCTTCTGAAGCTGCATTGGCTGGTGCCGAATCAACCAAAAGCATGCTGGCACAGGCGGGCCGGTCAAGTTACGTGTCAGCGGAGA TAGTAGCATCGGTGCCGGATCCAGGAGCAATGGCTGCAGCTGCCTGGTACAGAGCTGCAGCATTGGCTGTCCGGAACACACTGCAGAGCTCGTCCTTACC CGATCCATCATCTGCTCCGTGA
AA sequence Show only first row Show all	>Lus10031879 pacid=23180583 polypeptide=Lus10031879 locus=Lus10031879.g ID=Lus10031879.BGIv1.0 annot-version=v1.0 MASTAKKLINDPNDVVTEFIEGLVESYPGMQYLDGFPEVKVVLRADVSGATNDKVAVISGGGSGHEPAHAGFVGEGMLTAAVCGDVFASPQVDSILAGIR AVTGPMGCLLIVKNYTGDRLNFGLAAEQAKSEGYKVEVAGAAAAVGLSLADVAAEAKRASAFIGTMGVALSVCTLPGQVTPDRLGPGKMELGLGIHGEPG AAVADIQPVGVVVSHVLKQILSQETNYVPITRGCQVVIMVNGLGATPPMELMIVAGKAVPQLQLEHGLAVERVYTGSFMTSLDMAGISITIMKADQVILE RLDAATKAPYWPVGVDGNRPPAKIPVPLPQSPTTRSDVSLGRPTELSEQGIILEVAIEAAASAVVNLKDPLNEWDSKVGDGDCGSTMYRGATAILDDMKR YYPVNDAAETINEMGSSISRVMGGTSGIIYTILAKAAYASLKATTQSAVTSKQWAEALEASITAVSKYGGASAGYRTLLDALIPALEVLQQRLNAGDDPV AAFVLSSEAALAGAESTKSMLAQAGRSSYVSAEIVASVPDPGAMAAAAWYRAAALAVRNTLQSSSLPDPSSAP

---

DESeq2's median of ratios [FLAX]

Order by: Tissue Experiment Show only core collection Show again Show schematic diagram

---

Coexpressed genes

Compare expression of checked genes Schematic diagram [FLAX] Schematic diagram [POPLAR]

*If you select 4 or less genes and then press "compare expression", expression will be shown as a graph. If you select more than 4 genes, expresion will be shown as a heat map.
*Color represents relative expression level among samples for each gene.

At best	At TF class	At alias	At description		Locus	MR	r	Symbol	HYP	R_s2_CTR	R_s2_Fox	R_s4_CTR	R_s4_Fox	R_r1_CTR	R_r1_Fox	R_r3_CTR	R_r3_Fox	R_r1s2_CTR	R_r1s2_Fox	R_r3s2_CTR	R_r3s2_Fox	R_s6_CTR	R_s6_Al4	R_s6_Al12	R_s6_Al24	R_s8_CTR	R_s8_Al4	R_s8_Al12	R_s8_Al24	R_r5_CTR	R_r5_Al4	R_r5_Al12	R_r5_Al24	R_r7_CTR	R_r7_Al4	R_r7_Al12	R_r7_Al24	LEAF_N	LEAF_P	LEAF_NPK	SAM	AR_Bet	AR_rdf	cPAR	TOP_Bet	TOP_rdf	iFIBa	iFIBb	MID_Bet	MID_rdf	tFIBa	tFIB_Gr	tFIB_Li	tFIB_Bi	tFIBb	tFIBb_PUL8	tFIBb_PUL24	tFIBb_PUL96	tFIBb_OPP8	tFIBb_OPP24	tFIBb_OPP96	sXYLa	sXYLb	sXYLb_PUL8	sXYLb_PUL24	sXYLb_PUL96	sXYLb_OPP8	sXYLb_OPP24	sXYLb_OPP96
AT3G17770			Dihydroxyacetone kinase (.1)		Lus10031879 [exp]	0	1
AT3G17770			Dihydroxyacetone kinase (.1)		Lus10031311 [exp]	1.0	0.9114
AT5G49650		XK2, XK-2	XYLULOSE KINASE 2, xylulose ki...		Lus10028235 [exp]	5.1	0.8967
AT4G16130		ATISA1, ARA1	arabinose kinase (.1)		Lus10026983 [exp]	8.1	0.8854
AT1G67340			HCP-like superfamily protein w...		Lus10037021 [exp]	8.3	0.8204
AT4G08570			Heavy metal transport/detoxifi...		Lus10039419 [exp]	10.4	0.8774
AT5G47040		LON2	lon protease 2 (.1)		Lus10040131 [exp]	10.7	0.8751
AT5G67190	AP2_ERF	DEAR2	DREB and EAR motif protein 2 (...		Lus10018727 [exp]	10.9	0.8313
AT1G79750		ATNADP-ME4	Arabidopsis thaliana NADP-mali...		Lus10014149 [exp]	11.5	0.8694
AT5G21170		AKINBETA1	5'-AMP-activated protein kinas...		Lus10041287 [exp]	13.3	0.8552
AT5G49650		XK2, XK-2	XYLULOSE KINASE 2, xylulose ki...		Lus10007234 [exp]	14.3	0.8744

Compare expression of checked genes

Lus10031879 coexpression network

*The number of genes in the network is adjusted within 50 genes.
*Gene name represents symbol(s) of closest Arabidopsis gene if symbol(s) for the gene itself doesn't exist.
*Circle diameter represents the number of connection with other genes within this network.
*Color for gene name represents subnetwork based on the result of network clustering.