Plant FIBer expression Database

External link	JGI Phytozome v13 [genome browser]
Symbol
Arabidopsis homologues Show only best Show top 10	No hit found
Paralogs Show only best Show top 10	Gene ID BLAST score/e-value At best hit BLAST score/e-value TAIR10 short description Lus10031312 [exp] 225 / 7e-76 ND / Lus10031886 [exp] 129 / 2e-38 ND /
Poplar homologues Show only best Show top 10	No hit found
PFAM info
Representative CDS sequence Show only first row Show all	>Lus10031880 pacid=23180768 polypeptide=Lus10031880 locus=Lus10031880.g ID=Lus10031880.BGIv1.0 annot-version=v1.0 ATGGGACAACAGCAACGAGTGAATCACGAACGAACTCGAGCAGATAATGGTTCGAGACGAGAACATATGTTGTGCATAGGAATAACCGGCAACTCTCTTC CTCTCGGCAGCGGAAGCCGTCCGTACCACCGTGATCATCGACGCCTCCCCGCCGAAAACTGGGCCTGCTCGGCAGGGAGGCTGTGGCACTGCCAGGAGTG CATGAAGGATGAGGCTGTGCGACGAGGCAGCGCCAGTGACGTAGTCGACCGCACCATCACAGGGCTAAGCCGCCGGCAGATTAACTTCGGGATTTGCTGC AAGCTGAAGCTGATGGAGGTAGCGGCGGAGACTGGGGAGGGAAATACCATCTGCTCGGGCGTCGAGGAGGCAATGTGGCGGCTGGTGGCAGAGCAGGAGC AGCGTGGGGAGGTGATCATGGGGGATGAAGAGTTGAAGAATGCATGGGGTATCGCGGAGGAGCTGCCAAGGAAGTGCGGGGTCGTTAACTCGCCGGCGAA GTGCCGTTTCAACCGCCGGATGATGATCACTTCCTCGTCGGGAATGTAG
AA sequence Show only first row Show all	>Lus10031880 pacid=23180768 polypeptide=Lus10031880 locus=Lus10031880.g ID=Lus10031880.BGIv1.0 annot-version=v1.0 MGQQQRVNHERTRADNGSRREHMLCIGITGNSLPLGSGSRPYHRDHRRLPAENWACSAGRLWHCQECMKDEAVRRGSASDVVDRTITGLSRRQINFGICC KLKLMEVAAETGEGNTICSGVEEAMWRLVAEQEQRGEVIMGDEELKNAWGIAEELPRKCGVVNSPAKCRFNRRMMITSSSGM

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DESeq2's median of ratios [FLAX]

Order by: Tissue Experiment Show only core collection Show again Show schematic diagram

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Coexpressed genes

Compare expression of checked genes Schematic diagram [FLAX] Schematic diagram [POPLAR]

*If you select 4 or less genes and then press "compare expression", expression will be shown as a graph. If you select more than 4 genes, expresion will be shown as a heat map.
*Color represents relative expression level among samples for each gene.

At best	At TF class	At alias	At description		Locus	MR	r	Symbol	HYP	R_s2_CTR	R_s2_Fox	R_s4_CTR	R_s4_Fox	R_r1_CTR	R_r1_Fox	R_r3_CTR	R_r3_Fox	R_r1s2_CTR	R_r1s2_Fox	R_r3s2_CTR	R_r3s2_Fox	R_s6_CTR	R_s6_Al4	R_s6_Al12	R_s6_Al24	R_s8_CTR	R_s8_Al4	R_s8_Al12	R_s8_Al24	R_r5_CTR	R_r5_Al4	R_r5_Al12	R_r5_Al24	R_r7_CTR	R_r7_Al4	R_r7_Al12	R_r7_Al24	LEAF_N	LEAF_P	LEAF_NPK	SAM	AR_Bet	AR_rdf	cPAR	TOP_Bet	TOP_rdf	iFIBa	iFIBb	MID_Bet	MID_rdf	tFIBa	tFIB_Gr	tFIB_Li	tFIB_Bi	tFIBb	tFIBb_PUL8	tFIBb_PUL24	tFIBb_PUL96	tFIBb_OPP8	tFIBb_OPP24	tFIBb_OPP96	sXYLa	sXYLb	sXYLb_PUL8	sXYLb_PUL24	sXYLb_PUL96	sXYLb_OPP8	sXYLb_OPP24	sXYLb_OPP96
					Lus10031880 [exp]	0	1
AT4G16740		ATTPS03	terpene synthase 03 (.1.2)		Lus10018500 [exp]	1.0	0.9289
AT5G37600		ATGLN1;1, GLN1;...	ARABIDOPSIS THALIANA GLUTAMINE...		Lus10012536 [exp]	9.8	0.9237
AT3G52460			hydroxyproline-rich glycoprote...		Lus10004193 [exp]	11.3	0.8775
AT5G06570			alpha/beta-Hydrolases superfam...		Lus10016204 [exp]	14.0	0.9159
AT5G53970		TAT7	tyrosine aminotransferase 7, T...		Lus10017934 [exp]	14.3	0.9231
					Lus10031312 [exp]	15.5	0.9078
AT2G23790			Protein of unknown function (D...		Lus10022496 [exp]	16.1	0.9203
AT1G15190			Fasciclin-like arabinogalactan...		Lus10003958 [exp]	19.2	0.8850
					Lus10039453 [exp]	20.2	0.8613
AT2G19900		ATNADP-ME1	Arabidopsis thaliana NADP-mali...		Lus10012964 [exp]	23.4	0.9119

Compare expression of checked genes

Lus10031880 coexpression network

*The number of genes in the network is adjusted within 50 genes.
*Gene name represents symbol(s) of closest Arabidopsis gene if symbol(s) for the gene itself doesn't exist.
*Circle diameter represents the number of connection with other genes within this network.
*Color for gene name represents subnetwork based on the result of network clustering.