Plant FIBer expression Database

External link	JGI Phytozome v13 [genome browser]
Symbol
Arabidopsis homologues Show only best Show top 10	Locus ID BLAST score/e-value TF class Alias TAIR10 short description AT1G73390 628 / 0 Endosomal targeting BRO1-like domain-containing protein (.1.2.3.4) AT1G17940 598 / 0 Endosomal targeting BRO1-like domain-containing protein (.1) AT5G14020 253 / 4e-80 Endosomal targeting BRO1-like domain-containing protein (.1)
Paralogs Show only best Show top 10	Gene ID BLAST score/e-value At best hit BLAST score/e-value TAIR10 short description Lus10031313 [exp] 763 / 0 AT1G73390 690 / 0.0 Endosomal targeting BRO1-like domain-containing protein (.1.2.3.4) Lus10042289 [exp] 697 / 0 AT1G73390 686 / 0.0 Endosomal targeting BRO1-like domain-containing protein (.1.2.3.4) Lus10026368 [exp] 620 / 0 AT1G73390 613 / 0.0 Endosomal targeting BRO1-like domain-containing protein (.1.2.3.4) Lus10041527 [exp] 319 / 9e-106 AT5G14020 483 / 6e-171 Endosomal targeting BRO1-like domain-containing protein (.1) Lus10012563 [exp] 318 / 2e-105 AT5G14020 486 / 9e-172 Endosomal targeting BRO1-like domain-containing protein (.1) Lus10035167 [exp] 301 / 7e-99 AT5G14020 497 / 4e-176 Endosomal targeting BRO1-like domain-containing protein (.1) Lus10031997 [exp] 295 / 1e-96 AT5G14020 504 / 9e-179 Endosomal targeting BRO1-like domain-containing protein (.1)
Poplar homologues Show only best Show top 10	Locus ID BLAST score/e-value At best hit BLAST score/e-value TAIR10 short description Potri.004G067400 [exp] 695 / 0 AT1G73390 647 / 0.0 Endosomal targeting BRO1-like domain-containing protein (.1.2.3.4) Potri.017G154200 [exp] 601 / 0 AT1G73390 563 / 0.0 Endosomal targeting BRO1-like domain-containing protein (.1.2.3.4) Potri.017G062000 [exp] 303 / 1e-99 AT5G14020 524 / 0.0 Endosomal targeting BRO1-like domain-containing protein (.1) Potri.001G323600 [exp] 292 / 2e-95 AT5G14020 521 / 0.0 Endosomal targeting BRO1-like domain-containing protein (.1)
PFAM info	Clan ID Clan name Pfam ID Pfam name Pfam description PF03097 [flax] [poplar] BRO1 BRO1-like domain
Representative CDS sequence Show only first row Show all	>Lus10031881 pacid=23180776 polypeptide=Lus10031881 locus=Lus10031881.g ID=Lus10031881.BGIv1.0 annot-version=v1.0 ATGGGATGCATAGTGTCTACACCTAAGGATACTGGTGGGAACAGGAGAAGACCTGCGAGTATCGGGGAGCTTACTGTCTATGTACCTGGGTTTCGAATAC CGAAACCAGCAGATTTCTCTCTGGCTCTTGGTGACCACTTGTCGAAGAATCTAGTTGAACAGCTCTCCGCTCTAAGGACCCGGATTGTGGTTATGGCAGG CCAAGAAGCACCTACTGTTACCAGGACAAGAAGAAGAGCTACACAGCATGGTGGTTCAACTTTGGCTGATCTTCATCAGGCTCTTGAAGACTACTTGCCT GTTCTTGTGGGTTTAGTTAAAGATGGTAGCCAACTACAACACAAAATCCAATTTGTGTGGGTAAATCAAGAGGATGAGGCAGAGGAGACAGCAATGTCGA ATGCATGGTACGAGATCTTGTCCGTCTTGCACTTGATGGCGGTACTATCGTTATCACAGGCGAATCTGTTACTTCTCCCGAGAACGTCTTCTGATGGTTA TCAGCCAAAAGTATCAGAAGAAAGTAGGAGAGCTTCTGTTGACATATTCTTGAAGGCTGCTGGATACTTGGATTGCGCAGTTAGACACGTTCTTCCACAC TTACCCGCTGCACTGAGGAGAGACTTGCCCGTCGACCTTGTTGAGGGAGTTCTTCGAGCACTTTCCCTGCAAGCACTGGGTCAGAGTGTTGATATCCAAC TTGGGATGGCAATCGATAGCGCGAAAGCCACACTTGCAGTGAAACGGAGGCTTGCTTGTGAGATGGTCAAGTACTGGCAACAGGCTCAAGATAACATAAT GAACCTTCCCCTATCGAATGGCTGGGGCGAAAAGCACCGTCTTTTCATCAAATGGAAATACGTGGAAGCAAAGGCTGCTGCATATTACTACCACGGCTTG ATACTAGACGAAGGCAACACGGAGAAATCTCATGGGATGGCTGTAGCTGCACTGCAAGCTGCGGATGAGTACTTCAAAGAGAGTAAAAGAGCTTGCGAGG CATTCAATGCCTCCTCTCCTACATCAAGAAATCCACCACTTTGGGGCACCATGAAGTATCTATCAGAGAAAATCCCAAGAGACACTTCCAGCAAAGTGCG GATAAATCGTGATCTCTACTCCCACGAAAAGATCATGGAGACGGCACCAACGCTGCCGGATTTCGCTCTGGCACTCAAACCGGACGATTTCCAGCTCCCT CAGGCCGACCCCTCGTGGGACCACGAGAACGAAGCGAATGCAAACCATCTCACGAGCTGA
AA sequence Show only first row Show all	>Lus10031881 pacid=23180776 polypeptide=Lus10031881 locus=Lus10031881.g ID=Lus10031881.BGIv1.0 annot-version=v1.0 MGCIVSTPKDTGGNRRRPASIGELTVYVPGFRIPKPADFSLALGDHLSKNLVEQLSALRTRIVVMAGQEAPTVTRTRRRATQHGGSTLADLHQALEDYLP VLVGLVKDGSQLQHKIQFVWVNQEDEAEETAMSNAWYEILSVLHLMAVLSLSQANLLLLPRTSSDGYQPKVSEESRRASVDIFLKAAGYLDCAVRHVLPH LPAALRRDLPVDLVEGVLRALSLQALGQSVDIQLGMAIDSAKATLAVKRRLACEMVKYWQQAQDNIMNLPLSNGWGEKHRLFIKWKYVEAKAAAYYYHGL ILDEGNTEKSHGMAVAALQAADEYFKESKRACEAFNASSPTSRNPPLWGTMKYLSEKIPRDTSSKVRINRDLYSHEKIMETAPTLPDFALALKPDDFQLP QADPSWDHENEANANHLTS

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DESeq2's median of ratios [FLAX]

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Coexpressed genes

Compare expression of checked genes Schematic diagram [FLAX] Schematic diagram [POPLAR]

*If you select 4 or less genes and then press "compare expression", expression will be shown as a graph. If you select more than 4 genes, expresion will be shown as a heat map.
*Color represents relative expression level among samples for each gene.

At best	At TF class	At alias	At description		Locus	MR	r	Symbol	HYP	R_s2_CTR	R_s2_Fox	R_s4_CTR	R_s4_Fox	R_r1_CTR	R_r1_Fox	R_r3_CTR	R_r3_Fox	R_r1s2_CTR	R_r1s2_Fox	R_r3s2_CTR	R_r3s2_Fox	R_s6_CTR	R_s6_Al4	R_s6_Al12	R_s6_Al24	R_s8_CTR	R_s8_Al4	R_s8_Al12	R_s8_Al24	R_r5_CTR	R_r5_Al4	R_r5_Al12	R_r5_Al24	R_r7_CTR	R_r7_Al4	R_r7_Al12	R_r7_Al24	LEAF_N	LEAF_P	LEAF_NPK	SAM	AR_Bet	AR_rdf	cPAR	TOP_Bet	TOP_rdf	iFIBa	iFIBb	MID_Bet	MID_rdf	tFIBa	tFIB_Gr	tFIB_Li	tFIB_Bi	tFIBb	tFIBb_PUL8	tFIBb_PUL24	tFIBb_PUL96	tFIBb_OPP8	tFIBb_OPP24	tFIBb_OPP96	sXYLa	sXYLb	sXYLb_PUL8	sXYLb_PUL24	sXYLb_PUL96	sXYLb_OPP8	sXYLb_OPP24	sXYLb_OPP96
AT1G73390			Endosomal targeting BRO1-like ...		Lus10031881 [exp]	0	1
AT3G02460			Ypt/Rab-GAP domain of gyp1p su...		Lus10034099 [exp]	3.5	0.7968
AT1G51590		MNS1, MANIB	ALPHA-MANNOSIDASE IB, alpha-ma...		Lus10034820 [exp]	5.0	0.8147
AT5G05980		ATDFB, FPGS1	folylpolyglutamate synthetase ...		Lus10040261 [exp]	6.5	0.7676
AT1G62760			Plant invertase/pectin methyle...		Lus10032232 [exp]	14.4	0.6898
AT4G30080	ARF	ARF16	auxin response factor 16 (.1)		Lus10019940 [exp]	15.4	0.7499
AT2G29525		AtIPCS3	Arabidopsis Inositol phosphory...		Lus10040720 [exp]	19.0	0.7155
AT3G46440		UXS5	UDP-XYL synthase 5 (.1.2)		Lus10005450 [exp]	20.4	0.7530
AT1G36050			Endoplasmic reticulum vesicle ...		Lus10036449 [exp]	21.6	0.7524
AT1G73390			Endosomal targeting BRO1-like ...		Lus10031313 [exp]	25.0	0.7627
AT1G55730		ATCAX5	cation exchanger 5 (.1.2)		Lus10034853 [exp]	25.2	0.7906

Compare expression of checked genes

Lus10031881 coexpression network

*The number of genes in the network is adjusted within 50 genes.
*Gene name represents symbol(s) of closest Arabidopsis gene if symbol(s) for the gene itself doesn't exist.
*Circle diameter represents the number of connection with other genes within this network.
*Color for gene name represents subnetwork based on the result of network clustering.