Plant FIBer expression Database

External link	JGI Phytozome v13 [genome browser]
Symbol
Arabidopsis homologues Show only best Show top 10	Locus ID BLAST score/e-value TF class Alias TAIR10 short description AT2G01940 311 / 1e-104 C2H2ZnF SGR5, ATIDD15 SHOOT GRAVITROPISM 5, ARABIDOPSIS THALIANA INDETERMINATE\(ID\)-DOMAIN 15, C2H2-like zinc finger protein (.1.2.3) AT1G68130 308 / 2e-103 C2H2ZnF IDD14beta, IDD14alpha, ATIDD14 indeterminate(ID)-domain 14 (.1), indeterminate(ID)-domain 14 (.2) AT1G25250 290 / 3e-97 C2H2ZnF ATIDD16 indeterminate(ID)-domain 16 (.1) AT3G50700 217 / 1e-67 C2H2ZnF ATIDD2 indeterminate(ID)-domain 2 (.1) AT5G66730 218 / 2e-67 C2H2ZnF IDD1, ENY INDETERMINATE DOMAIN 1, ENHYDROUS, C2H2-like zinc finger protein (.1) AT3G13810 216 / 1e-66 C2H2ZnF ATIDD11 indeterminate(ID)-domain 11 (.1), indeterminate(ID)-domain 11 (.2), indeterminate(ID)-domain 11 (.3) AT1G03840 216 / 2e-66 C2H2ZnF MGP Magpie, C2H2 and C2HC zinc fingers superfamily protein (.1.2) AT5G03150 214 / 5e-66 C2H2ZnF JKD JACKDAW, C2H2-like zinc finger protein (.1) AT1G14580 213 / 9e-66 C2H2ZnF C2H2-like zinc finger protein (.1.2) AT2G02080 213 / 2e-65 C2H2ZnF ATIDD4 indeterminate(ID)-domain 4 (.1), indeterminate(ID)-domain 4 (.2)
Paralogs Show only best Show top 10	Gene ID BLAST score/e-value At best hit BLAST score/e-value TAIR10 short description Lus10031314 [exp] 369 / 9e-127 AT1G25250 426 / 2e-146 indeterminate(ID)-domain 16 (.1) Lus10026369 [exp] 311 / 8e-105 AT2G01940 399 / 5e-137 SHOOT GRAVITROPISM 5, ARABIDOPSIS THALIANA INDETERMINATE\(ID\)-DOMAIN 15, C2H2-like zinc finger protein (.1.2.3) Lus10010820 [exp] 219 / 3e-70 AT3G50700 349 / 2e-119 indeterminate(ID)-domain 2 (.1) Lus10041723 [exp] 222 / 1e-68 AT3G50700 489 / 1e-170 indeterminate(ID)-domain 2 (.1) Lus10007168 [exp] 218 / 3e-67 AT5G66730 386 / 2e-129 INDETERMINATE DOMAIN 1, ENHYDROUS, C2H2-like zinc finger protein (.1) Lus10008396 [exp] 218 / 6e-67 AT3G13810 339 / 1e-110 indeterminate(ID)-domain 11 (.1), indeterminate(ID)-domain 11 (.2), indeterminate(ID)-domain 11 (.3) Lus10019927 [exp] 213 / 1e-65 AT5G03150 386 / 6e-130 JACKDAW, C2H2-like zinc finger protein (.1) Lus10004840 [exp] 213 / 2e-65 AT3G13810 337 / 1e-110 indeterminate(ID)-domain 11 (.1), indeterminate(ID)-domain 11 (.2), indeterminate(ID)-domain 11 (.3) Lus10026497 [exp] 212 / 2e-65 AT5G03150 384 / 2e-129 JACKDAW, C2H2-like zinc finger protein (.1)
Poplar homologues Show only best Show top 10	Locus ID BLAST score/e-value At best hit BLAST score/e-value TAIR10 short description Potri.012G040200 [exp] 342 / 2e-116 AT2G01940 420 / 2e-144 SHOOT GRAVITROPISM 5, ARABIDOPSIS THALIANA INDETERMINATE\(ID\)-DOMAIN 15, C2H2-like zinc finger protein (.1.2.3) Potri.015G033100 [exp] 334 / 4e-113 AT2G01940 431 / 1e-148 SHOOT GRAVITROPISM 5, ARABIDOPSIS THALIANA INDETERMINATE\(ID\)-DOMAIN 15, C2H2-like zinc finger protein (.1.2.3) Potri.010G101200 [exp] 331 / 1e-112 AT1G68130 428 / 1e-148 indeterminate(ID)-domain 14 (.1), indeterminate(ID)-domain 14 (.2) Potri.008G140400 [exp] 326 / 1e-110 AT1G68130 437 / 5e-152 indeterminate(ID)-domain 14 (.1), indeterminate(ID)-domain 14 (.2) Potri.005G027200 [exp] 225 / 5e-70 AT1G03840 300 / 7e-96 Magpie, C2H2 and C2HC zinc fingers superfamily protein (.1.2) Potri.006G129300 [exp] 224 / 5e-70 AT5G03150 371 / 1e-123 JACKDAW, C2H2-like zinc finger protein (.1) Potri.013G019200 [exp] 224 / 6e-70 AT3G50700 327 / 4e-107 indeterminate(ID)-domain 2 (.1) Potri.016G088500 [exp] 222 / 4e-69 AT5G03150 353 / 1e-116 JACKDAW, C2H2-like zinc finger protein (.1) Potri.002G208444 [exp] 223 / 5e-69 AT3G50700 311 / 2e-100 indeterminate(ID)-domain 2 (.1) Potri.001G069948 [exp] 221 / 1e-68 AT3G50700 334 / 5e-110 indeterminate(ID)-domain 2 (.1)
PFAM info
Representative CDS sequence Show only first row Show all	>Lus10031882 pacid=23180708 polypeptide=Lus10031882 locus=Lus10031882.g ID=Lus10031882.BGIv1.0 annot-version=v1.0 ATGTTCTGTAGCAACAAGAACCCCTCTTCTTCTCCTCCTTCTGATCCTTTCTCTTCTTCTTCTTTGGATAATAATAACTGCCATGAATCTTCCTCCGCCG CCGCTGCCTCCTCCTCCGCCGCCAAACGGAAGCGCCGCCCCGCCGGCACTCCAGGGGGCACAGATCCCGATGCGGAGGTGGTCTCGCTGTCGCCTCGGAC GCTGATGGAGTCGGATAGGTACGTTTGCGAGATATGTAACCAAGGATTCCAGCGCGACCAGAACCTACAAATGCACCGCAGGCGCCACAAGGTGCCGTGG AAGCTTCTCAAAAGGGAGAGCCCCGTTGTAAAAAAACGGGTCTTCGTGTGTCCCGAATCGAGTTGCCTGCATCACGACCCGTGTCACGCGCTGGGCGACT TGGTCGGGATCAAGAAGCACTTCAGGAGGAAGCACAGTAATCAGAAGCAGTGGGTTTGCGACAAGTGTAACAAAGGCTACGCCGTCCAATCGGACTACAA AGCTCACCTCAAGACTTGTGGCACCCGCGGCCACTCTTGCGACTGCGGCCGCGTTTTCTCCAGAGTGGAGAGTTTCATAGAGCACCAAGACGCATGCACC ATGGGACGTCATTCACATTCCCCCAACTTCCAACAACAACAACAACCAACGGCTTGCTTATCTCGAACTGCCTCCGACCCTAGCCCCACGGCCTTGGCCG ATTCTCGTGCCATCTCCACGCCAGCATCGTCAACAACAACAACCTCCTCCGCATCCAGCTCCACAGCTCGACCACCACCAACAACGCGGTGGTGGTCGCG CTGCCACCTCGTCATTCATGTCATTGCCCACCACAACAACGGAAGGCCGAGGTTGTGA
AA sequence Show only first row Show all	>Lus10031882 pacid=23180708 polypeptide=Lus10031882 locus=Lus10031882.g ID=Lus10031882.BGIv1.0 annot-version=v1.0 MFCSNKNPSSSPPSDPFSSSSLDNNNCHESSSAAAASSSAAKRKRRPAGTPGGTDPDAEVVSLSPRTLMESDRYVCEICNQGFQRDQNLQMHRRRHKVPW KLLKRESPVVKKRVFVCPESSCLHHDPCHALGDLVGIKKHFRRKHSNQKQWVCDKCNKGYAVQSDYKAHLKTCGTRGHSCDCGRVFSRVESFIEHQDACT MGRHSHSPNFQQQQQPTACLSRTASDPSPTALADSRAISTPASSTTTTSSASSSTARPPPTTRWWSRCHLVIHVIAHHNNGRPRL

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DESeq2's median of ratios [FLAX]

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Coexpressed genes

Compare expression of checked genes Schematic diagram [FLAX] Schematic diagram [POPLAR]

*If you select 4 or less genes and then press "compare expression", expression will be shown as a graph. If you select more than 4 genes, expresion will be shown as a heat map.
*Color represents relative expression level among samples for each gene.

At best	At TF class	At alias	At description		Locus	MR	r	Symbol	HYP	R_s2_CTR	R_s2_Fox	R_s4_CTR	R_s4_Fox	R_r1_CTR	R_r1_Fox	R_r3_CTR	R_r3_Fox	R_r1s2_CTR	R_r1s2_Fox	R_r3s2_CTR	R_r3s2_Fox	R_s6_CTR	R_s6_Al4	R_s6_Al12	R_s6_Al24	R_s8_CTR	R_s8_Al4	R_s8_Al12	R_s8_Al24	R_r5_CTR	R_r5_Al4	R_r5_Al12	R_r5_Al24	R_r7_CTR	R_r7_Al4	R_r7_Al12	R_r7_Al24	LEAF_N	LEAF_P	LEAF_NPK	SAM	AR_Bet	AR_rdf	cPAR	TOP_Bet	TOP_rdf	iFIBa	iFIBb	MID_Bet	MID_rdf	tFIBa	tFIB_Gr	tFIB_Li	tFIB_Bi	tFIBb	tFIBb_PUL8	tFIBb_PUL24	tFIBb_PUL96	tFIBb_OPP8	tFIBb_OPP24	tFIBb_OPP96	sXYLa	sXYLb	sXYLb_PUL8	sXYLb_PUL24	sXYLb_PUL96	sXYLb_OPP8	sXYLb_OPP24	sXYLb_OPP96
AT2G01940	C2H2ZnF	SGR5, ATIDD15	SHOOT GRAVITROPISM 5, ARABIDOP...		Lus10031882 [exp]	0	1
AT2G01420		PIN4, ATPIN4	ARABIDOPSIS PIN-FORMED 4, Auxi...		Lus10012680 [exp]	1.7	0.8772
AT1G69690	TCP	AtTCP15, TCP15	TEOSINTE BRANCHED1/CYCLOIDEA/P...		Lus10037190 [exp]	2.0	0.8372
AT1G25250	C2H2ZnF	ATIDD16	indeterminate(ID)-domain 16 (....		Lus10031314 [exp]	2.4	0.8693
AT2G20180	bHLH	PIF1, PIL5, bHL...	PHY-INTERACTING FACTOR 1, phyt...		Lus10011899 [exp]	3.9	0.8528
AT1G70280			NHL domain-containing protein ...		Lus10039484 [exp]	5.5	0.8287
AT5G40960			Protein of unknown function (D...		Lus10035200 [exp]	5.7	0.8048
AT3G25110		ATFATA	fatA acyl-ACP thioesterase (.1...		Lus10038190 [exp]	6.0	0.8110
AT5G47750		PK5, D6PKL2	D6 protein kinase like 2 (.1)		Lus10016629 [exp]	6.8	0.7751
AT1G61350			ARM repeat superfamily protein...		Lus10002598 [exp]	9.5	0.8159
AT2G20180	bHLH	PIF1, PIL5, bHL...	PHY-INTERACTING FACTOR 1, phyt...		Lus10022833 [exp]	11.0	0.8226

Compare expression of checked genes

Lus10031882 coexpression network

*The number of genes in the network is adjusted within 50 genes.
*Gene name represents symbol(s) of closest Arabidopsis gene if symbol(s) for the gene itself doesn't exist.
*Circle diameter represents the number of connection with other genes within this network.
*Color for gene name represents subnetwork based on the result of network clustering.